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alanorth/batchfile.txt

Created November 13, 2014 13:21
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Running Mothur on HPC
Raw
batchfile.txt
screen.seqs(fasta=stability.trim.contigs.fasta, group=stability.contigs.groups, maxambig=2, minlength=239, maxlength=260)
Raw
mothur.batch
#!/bin/env bash
#SBATCH -p
#SBATCH -J mothur
#SBATCH -n 1
module load mothur/1.33.0
mothur batchfile.txt
@kilaza
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kilaza commented Nov 14, 2014

It started running, but in few minutes i received a msg Write failed: Connection reset by peer
Write failed: Connection reset by peer!, what does this mean? no analysis in progress?
how can I put to run on background, so that even if i log off analysis continues?

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