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install basic mkl libraries in debian docker image
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# install mkl | |
RUN apt update && apt install -y --force-yes apt-transport-https && \ | |
wget https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB && \ | |
apt-key add GPG-PUB-KEY-INTEL-SW-PRODUCTS-2019.PUB && \ | |
sh -c 'echo deb https://apt.repos.intel.com/mkl all main > /etc/apt/sources.list.d/intel-mkl.list' && \ | |
apt-get update && DEBIAN_FRONTEND=noninteractive apt-get -y install cpio intel-mkl-64bit-2018.3-051 && \ | |
(find /opt/intel -name "ia32*" -exec rm -rf {} \; || echo "removing ia32 binaries") ; \ | |
(find /opt/intel -name "examples" -type d -exec rm -rf {} \; || echo "removing examples") ; \ | |
(find /opt/intel -name "benchmarks" -exec rm -rf {} \; || echo "removing benchmarks") ; \ | |
(find /opt/intel -name "documentation*" -exec rm -rf {} \; || echo "removing documentation") ; \ | |
(rm -rf /opt/intel/mkl/interfaces ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*.a ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*mpi*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*tbb*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*pgi*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*mc*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*blacs*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*scalapack*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*gf*.so ) ; \ | |
(rm -rf /opt/intel/mkl/lib/intel64/*mic*.so ) ; \ | |
apt purge intel-tbb* intel-psxe* && \ | |
apt-get clean autoclean && \ | |
apt-get autoremove -y && \ | |
ln -s -f bash /bin/sh && \ | |
rm -rf /usr/share/doc && \ | |
echo "/opt/intel/mkl/lib/intel64" >> /etc/ld.so.conf.d/intel.conf && \ | |
ldconfig && \ | |
echo "source /opt/intel/mkl/bin/mklvars.sh intel64" >> /etc/bash.bashrc | |
RUN update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so \ | |
libblas.so-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50 && \ | |
update-alternatives --install /usr/lib/x86_64-linux-gnu/libblas.so.3 \ | |
libblas.so.3-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50 && \ | |
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so \ | |
liblapack.so-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50 && \ | |
update-alternatives --install /usr/lib/x86_64-linux-gnu/liblapack.so.3 \ | |
liblapack.so.3-x86_64-linux-gnu /opt/intel/mkl/lib/intel64/libmkl_rt.so 50 && \ | |
echo "/opt/intel/lib/intel64" > /etc/ld.so.conf.d/mkl.conf && \ | |
echo "/opt/intel/mkl/lib/intel64" >> /etc/ld.so.conf.d/mkl.conf && \ | |
ldconfig && \ | |
echo "MKL_THREADING_LAYER=GNU" >> /etc/environment |
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