SCRY paper queries

1.sparql

PREFIX scry:<http://www.scry.rocks/>
SELECT ?pau ?desc WHERE {
  GRAPH scry:orb_description {
    scry:orb scry:procedure   ?pau  .
    ?pau     scry:description ?desc .
  }
}

2.sparql

PREFIX scry:   <http://www.scry.rocks/>
PREFIX math:   <http://www.scry.rocks/math/>
SELECT ?desc ?pred ?arg {
    GRAPH scry:orb_description {
      {math:stdev scry:description ?desc .}
      UNION
      {math:stdev ?pred            ?arg_node  .
      ?arg_node   scry:identifier  ?arg_id    
                  scry:description ?arg_desc  .}
    }
  BIND(CONCAT("'",?arg_id,"' - ",?arg_desc) AS ?arg)
}

3.sparql

PREFIX scry:   <http://www.scry.rocks/>
PREFIX blast:  <http://www.scry.rocks/blast/>
PREFIX input:  <http://www.scry.rocks/input?>
PREFIX output: <http://www.scry.rocks/output?>

SELECT ?uniprot_id ?homolog_id ?score WHERE {
  VALUES(?uniprot_id) {("P68871") ("P02008")}

  GRAPH ?g1 {blast:fetch_sequence input:_     ?uniprot_id ;
                                  output:file ?file       .}
 
  GRAPH ?g2 {blast:blast input:file   ?file       ;
                         input:evalue "1e-20"     ;
                         output:ac    ?homolog_id ;
                         output:e_val ?e_value    .}
} ORDER BY ?homolog_id