Template submission script for comsol in lsf

sub_job_comsol_lsf.sh

#Generic script for submitting comsol job
#usage: sub_job.sh [COMSOL_IN_NAME] [optional:MEM]
INFILE=$1
OUTFILE=$(echo $INFILE | cut -f 1 -d ".")
OUTFILE+="_out.mph"

#Memory alloc
MEM=4096
if [ $# -ge 2 ]; then
        MEM=$2
fi

#cores
NP=4
if [ $# -ge 3 ]; then
        NP=$3
fi

JOB_STRING="comsol batch -np $3 -inputfile $INFILE -outputfile $OUTFILE"

#Now the submission line
SUB_STRING="bsub -n $3 -W 24:00 -R \"rusage[mem=$MEM]\" \"$JOB_STRING\""
echo "Final check:" $SUB_STRING

while true; do
	read -p  "Ready for sumission?[y/n]" OPTION
        case $OPTION in
                [Yy]* ) eval $SUB_STRING; break;;
                [Nn]* ) break;;
                * ) echo "y or n?";;
        esac
done