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alevchuk/gist:166015

Created August 11, 2009 18:19
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gistfile1.txt
make
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c align.cpp -o align.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c dbseq.cpp -o dbseq.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c main.cpp -o main.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c pairs.cpp -o pairs.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c param.cpp -o param.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -D
READ_36 -c reads.cpp -o reads.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -DREAD_36 -c utilities.cpp -o utilities.a.o
g++ -static -DMAXGAP=3 -DMAXHITS=10000 -DTHREAD -O3 -funroll-loops -DDB_CHR -DREAD_36 align.a.o dbseq.a.o main.a.o pairs.a.o param.a.o reads.a.o utilities.a.o -o bsmap -lpthread
rm -f *.o
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