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Spinal Cord Toolbox (4.2.1) | |
SCT info: | |
- version: 4.2.1 | |
- path: /home/alex/sct_4.2.1 | |
OS: linux (Linux-3.16.0-6-amd64-x86_64-with-debian-8.11) | |
CPU cores: Available: 4, Used by SCT: 4 | |
RAM: MemTotal: 4058416 kB | |
total used free shared buffers cached | |
Mem: 3963 3187 775 28 97 2237 | |
-/+ buffers/cache: 853 3110 | |
Swap: 879 0 879 | |
Check Python executable.............................[OK] | |
Using bundled python 3.6.10 |Anaconda, Inc.| (default, Jan 7 2020, 21:14:29) | |
[GCC 7.3.0] at /home/alex/sct_4.2.1/python/envs/venv_sct/bin/python | |
Check if data are installed.........................[OK] | |
Check if numpy is installed.........................[OK] (1.17.4) | |
Check if cryptography is installed..................[OK] (2.8) | |
Check if dipy is installed..........................[OK] (1.0.0) | |
Check if futures is installed.......................[OK] | |
Check if h5py is installed..........................[OK] (2.10.0) | |
Check if Keras is installed.........................generated new fontManager | |
[OK] (2.3.1) | |
Check if matplotlib is installed....................[OK] (3.1.2) | |
Check if nibabel is installed.......................[OK] (3.0.0) | |
Check if pandas is installed........................[OK] (0.25.3) | |
Check if psutil is installed........................[OK] (5.6.7) | |
Check if pyqt5 (5.11.3) is installed................[OK] | |
Check if pytest is installed........................[OK] (5.3.2) | |
Check if pytest-cov is installed....................[OK] (2.8.1) | |
Check if raven is installed.........................[OK] | |
Check if requests is installed......................[OK] (2.22.0) | |
Check if scipy is installed.........................[OK] (1.4.0) | |
Check if scikit-image is installed..................[FAIL] | |
dlopen: cannot load any more object with static TLS | |
It seems that scikit-image has not been built correctly. | |
Your install of scikit-image appears to be broken. | |
Try re-installing the package following the instructions at: | |
https://scikit-image.org/docs/stable/install.html | |
Check if scikit-learn is installed..................[FAIL] | |
dlopen: cannot load any more object with static TLS | |
___________________________________________________________________________ | |
Contents of /home/alex/sct_4.2.1/python/envs/venv_sct/lib/python3.6/site-packages/sklearn/__check_build: | |
__init__.py _check_build.cpython-36m-x86_64-linux-gnu.sosetup.py | |
__pycache__ | |
___________________________________________________________________________ | |
It seems that scikit-learn has not been built correctly. | |
If you have installed scikit-learn from source, please do not forget | |
to build the package before using it: run `python setup.py install` or | |
`make` in the source directory. | |
If you have used an installer, please check that it is suited for your | |
Python version, your operating system and your platform. | |
Check if tensorflow is installed....................[OK] (2.0.0) | |
Check if xlrd is installed..........................[OK] (1.2.0) | |
Check if xlutils is installed.......................[OK] | |
Check if xlwt is installed..........................[OK] (1.3.0) | |
Check if tqdm is installed..........................[OK] (4.40.2) | |
Check if transforms3d is installed..................[OK] (0.3.1) | |
Check if urllib3[secure] is installed...............[OK] (1.25.7) | |
Check if spinalcordtoolbox is installed.............[OK] | |
Check ANTs compatibility with OS ...................[OK] | |
Check PropSeg compatibility with OS ................[OK] | |
Check if DISPLAY variable is set....................[OK] | |
Check if figure can be opened with PyQt.............Traceback (most recent call last): | |
File "/home/alex/sct_4.2.1/scripts/sct_check_dependencies.py", line 379, in <module> | |
main() | |
File "/home/alex/sct_4.2.1/scripts/sct_check_dependencies.py", line 356, in main | |
from PyQt5.QtWidgets import QApplication, QLabel | |
ImportError: dlopen: cannot load any more object with static TLS | |
Installation validation Failed! | |
Please copy the historic of this Terminal (starting with the command install_sct) and paste it in the SCT Help forum (create a new discussion): | |
http://forum.spinalcordmri.org/c/sct | |
Installation failed |
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