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alexfoias/first run

Created April 20, 2021 15:13
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fsl shimming toolbox plugin
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first run
[20/04/21 11:02:59] (base) alex@NeuroPoly-MacBook-Pro fsleyes-plugin-shimming-toolbox % git checkout ah/plugin-package
Branch 'ah/plugin-package' set up to track remote branch 'ah/plugin-package' from 'origin'.
Switched to a new branch 'ah/plugin-package'
[20/04/21 11:03:07] (base) alex@NeuroPoly-MacBook-Pro fsleyes-plugin-shimming-toolbox % ls
Dockerfile README.md run.sh
MANIFEST.in fsleyes_plugin_shimming_toolbox setup.py
Makefile installer testing
[20/04/21 11:03:09] (base) alex@NeuroPoly-MacBook-Pro fsleyes-plugin-shimming-toolbox % make install
bash installer/install_conda.sh
rm -rf /Users/alex/shimming_toolbox/python
mkdir -p /Users/alex/shimming_toolbox/python
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 54.4M 100 54.4M 0 0 31.5M 0 0:00:01 0:00:01 --:--:-- 31.5M
bash /var/folders/11/q0s99tk17rj_7jtmj1psydbr0000gn/T/tmp.W4gKxfU7/Miniconda3-latest-MacOSX-x86_64.sh -p /Users/alex/shimming_toolbox/python -b -f
PREFIX=/Users/alex/shimming_toolbox/python
Unpacking payload ...
Collecting package metadata (current_repodata.json): done
Solving environment: done
## Package Plan ##
environment location: /Users/alex/shimming_toolbox/python
added / updated specs:
- brotlipy==0.7.0=py38h9ed2024_1003
- ca-certificates==2020.10.14=0
- certifi==2020.6.20=pyhd3eb1b0_3
- cffi==1.14.3=py38h2125817_2
- chardet==3.0.4=py38hecd8cb5_1003
- conda-package-handling==1.7.2=py38h22f3db7_0
- conda==4.9.2=py38hecd8cb5_0
- cryptography==3.2.1=py38hbcfaee0_1
- idna==2.10=py_0
- libcxx==10.0.0=1
- libedit==3.1.20191231=h1de35cc_1
- libffi==3.3=hb1e8313_2
- ncurses==6.2=h0a44026_1
- openssl==1.1.1h=haf1e3a3_0
- pip==20.2.4=py38hecd8cb5_0
- pycosat==0.6.3=py38h1de35cc_1
- pycparser==2.20=py_2
- pyopenssl==19.1.0=pyhd3eb1b0_1
- pysocks==1.7.1=py38_1
- python.app==2=py38_10
- python==3.8.5=h26836e1_1
- readline==8.0=h1de35cc_0
- requests==2.24.0=py_0
- ruamel_yaml==0.15.87=py38haf1e3a3_1
- setuptools==50.3.1=py38hecd8cb5_1
- six==1.15.0=py38hecd8cb5_0
- sqlite==3.33.0=hffcf06c_0
- tk==8.6.10=hb0a8c7a_0
- tqdm==4.51.0=pyhd3eb1b0_0
- urllib3==1.25.11=py_0
- wheel==0.35.1=pyhd3eb1b0_0
- xz==5.2.5=h1de35cc_0
- yaml==0.2.5=haf1e3a3_0
- zlib==1.2.11=h1de35cc_3
The following NEW packages will be INSTALLED:
brotlipy pkgs/main/osx-64::brotlipy-0.7.0-py38h9ed2024_1003
ca-certificates pkgs/main/osx-64::ca-certificates-2020.10.14-0
certifi pkgs/main/noarch::certifi-2020.6.20-pyhd3eb1b0_3
cffi pkgs/main/osx-64::cffi-1.14.3-py38h2125817_2
chardet pkgs/main/osx-64::chardet-3.0.4-py38hecd8cb5_1003
conda pkgs/main/osx-64::conda-4.9.2-py38hecd8cb5_0
conda-package-han~ pkgs/main/osx-64::conda-package-handling-1.7.2-py38h22f3db7_0
cryptography pkgs/main/osx-64::cryptography-3.2.1-py38hbcfaee0_1
idna pkgs/main/noarch::idna-2.10-py_0
libcxx pkgs/main/osx-64::libcxx-10.0.0-1
libedit pkgs/main/osx-64::libedit-3.1.20191231-h1de35cc_1
libffi pkgs/main/osx-64::libffi-3.3-hb1e8313_2
ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1
openssl pkgs/main/osx-64::openssl-1.1.1h-haf1e3a3_0
pip pkgs/main/osx-64::pip-20.2.4-py38hecd8cb5_0
pycosat pkgs/main/osx-64::pycosat-0.6.3-py38h1de35cc_1
pycparser pkgs/main/noarch::pycparser-2.20-py_2
pyopenssl pkgs/main/noarch::pyopenssl-19.1.0-pyhd3eb1b0_1
pysocks pkgs/main/osx-64::pysocks-1.7.1-py38_1
python pkgs/main/osx-64::python-3.8.5-h26836e1_1
python.app pkgs/main/osx-64::python.app-2-py38_10
readline pkgs/main/osx-64::readline-8.0-h1de35cc_0
requests pkgs/main/noarch::requests-2.24.0-py_0
ruamel_yaml pkgs/main/osx-64::ruamel_yaml-0.15.87-py38haf1e3a3_1
setuptools pkgs/main/osx-64::setuptools-50.3.1-py38hecd8cb5_1
six pkgs/main/osx-64::six-1.15.0-py38hecd8cb5_0
sqlite pkgs/main/osx-64::sqlite-3.33.0-hffcf06c_0
tk pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
tqdm pkgs/main/noarch::tqdm-4.51.0-pyhd3eb1b0_0
urllib3 pkgs/main/noarch::urllib3-1.25.11-py_0
wheel pkgs/main/noarch::wheel-0.35.1-pyhd3eb1b0_0
xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
yaml pkgs/main/osx-64::yaml-0.2.5-haf1e3a3_0
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Preparing transaction: done
Executing transaction: done
installation finished.
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.9.2
latest version: 4.10.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474
added / updated specs:
- python=3.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2021.4.13 | hecd8cb5_1 114 KB
certifi-2020.12.5 | py37hecd8cb5_0 140 KB
openssl-1.1.1k | h9ed2024_0 2.2 MB
pip-21.0.1 | py37hecd8cb5_0 1.8 MB
python-3.7.10 | h88f2d9e_0 18.2 MB
readline-8.1 | h9ed2024_0 333 KB
setuptools-52.0.0 | py37hecd8cb5_0 721 KB
sqlite-3.35.4 | hce871da_0 1.1 MB
wheel-0.36.2 | pyhd3eb1b0_0 33 KB
------------------------------------------------------------
Total: 24.6 MB
The following NEW packages will be INSTALLED:
ca-certificates pkgs/main/osx-64::ca-certificates-2021.4.13-hecd8cb5_1
certifi pkgs/main/osx-64::certifi-2020.12.5-py37hecd8cb5_0
libcxx pkgs/main/osx-64::libcxx-10.0.0-1
libffi pkgs/main/osx-64::libffi-3.3-hb1e8313_2
ncurses pkgs/main/osx-64::ncurses-6.2-h0a44026_1
openssl pkgs/main/osx-64::openssl-1.1.1k-h9ed2024_0
pip pkgs/main/osx-64::pip-21.0.1-py37hecd8cb5_0
python pkgs/main/osx-64::python-3.7.10-h88f2d9e_0
readline pkgs/main/osx-64::readline-8.1-h9ed2024_0
setuptools pkgs/main/osx-64::setuptools-52.0.0-py37hecd8cb5_0
sqlite pkgs/main/osx-64::sqlite-3.35.4-hce871da_0
tk pkgs/main/osx-64::tk-8.6.10-hb0a8c7a_0
wheel pkgs/main/noarch::wheel-0.36.2-pyhd3eb1b0_0
xz pkgs/main/osx-64::xz-5.2.5-h1de35cc_0
zlib pkgs/main/osx-64::zlib-1.2.11-h1de35cc_3
Downloading and Extracting Packages
wheel-0.36.2 | 33 KB | ################################################################# | 100%
pip-21.0.1 | 1.8 MB | ################################################################# | 100%
setuptools-52.0.0 | 721 KB | ################################################################# | 100%
ca-certificates-2021 | 114 KB | ################################################################# | 100%
readline-8.1 | 333 KB | ################################################################# | 100%
sqlite-3.35.4 | 1.1 MB | ################################################################# | 100%
certifi-2020.12.5 | 140 KB | ################################################################# | 100%
openssl-1.1.1k | 2.2 MB | ################################################################# | 100%
python-3.7.10 | 18.2 MB | ################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate pst_venv_1267b18e73341ad94da34474
#
# To deactivate an active environment, use
#
# $ conda deactivate
bash installer/install_plugin.sh
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.9.2
latest version: 4.10.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474
added / updated specs:
- fsleyes
The following packages will be downloaded:
package | build
---------------------------|-----------------
alabaster-0.7.12 | py_0 15 KB conda-forge
async_generator-1.10 | py_0 18 KB conda-forge
attrs-20.3.0 | pyhd3deb0d_0 41 KB conda-forge
babel-2.9.0 | pyhd3deb0d_0 6.2 MB conda-forge
backcall-0.2.0 | pyh9f0ad1d_0 13 KB conda-forge
backports-1.0 | py_2 4 KB conda-forge
backports.functools_lru_cache-1.6.4| pyhd8ed1ab_0 9 KB conda-forge
colorama-0.4.4 | pyh9f0ad1d_0 18 KB conda-forge
cryptography-3.4.7 | py37hce4a858_0 754 KB conda-forge
cycler-0.10.0 | py_2 9 KB conda-forge
dcm2niix-1.0.20210317 | h940c156_0 196 KB conda-forge
decorator-5.0.7 | pyhd8ed1ab_0 11 KB conda-forge
entrypoints-0.3 | pyhd8ed1ab_1003 8 KB conda-forge
expat-2.3.0 | he49afe7_0 131 KB conda-forge
file-tree-0.3.5 | pyhd8ed1ab_0 21 KB conda-forge
file-tree-fsl-0.1.5 | pyhd8ed1ab_0 11 KB conda-forge
fsleyes-1.0.1 | py37hf985489_0 29.3 MB conda-forge
fsleyes-props-1.7.2 | pyhd8ed1ab_0 90 KB conda-forge
fsleyes-widgets-0.11.3 | pyhd8ed1ab_0 502 KB conda-forge
fslpy-3.6.0 | pyh59e0f4d_0 3.7 MB conda-forge
h5py-3.2.1 |nompi_py37hdf859c4_100 1.1 MB conda-forge
hdf5-1.10.6 |nompi_hc5d9132_1114 3.1 MB conda-forge
idna-2.10 | pyh9f0ad1d_0 52 KB conda-forge
imagesize-1.2.0 | py_0 8 KB conda-forge
importlib-metadata-3.10.1 | py37hf985489_0 26 KB conda-forge
ipykernel-5.5.3 | py37h85f7c60_0 166 KB conda-forge
ipython-7.22.0 | py37h85f7c60_0 1.1 MB conda-forge
ipython_genutils-0.2.0 | py_1 21 KB conda-forge
isodate-0.6.0 | py_1 25 KB conda-forge
jpeg-9d | hbcb3906_0 250 KB conda-forge
jupyterlab_pygments-0.1.2 | pyh9f0ad1d_0 8 KB conda-forge
libcurl-7.76.1 | h8ef9fac_1 309 KB conda-forge
libedit-3.1.20191231 | h0678c8f_2 103 KB conda-forge
libev-4.33 | haf1e3a3_1 99 KB conda-forge
libgfortran-5.0.0 |9_3_0_h6c81a4c_22 19 KB conda-forge
libgfortran5-9.3.0 | h6c81a4c_22 1.7 MB conda-forge
libiconv-1.16 | haf1e3a3_0 1.3 MB conda-forge
libopenblas-0.3.12 |openmp_h54245bb_1 8.8 MB conda-forge
libpng-1.6.37 | h7cec526_2 313 KB conda-forge
libsodium-1.0.18 | hbcb3906_1 516 KB conda-forge
llvm-openmp-11.1.0 | hda6cdc1_1 268 KB conda-forge
lz4-c-1.9.3 | h046ec9c_0 155 KB conda-forge
matplotlib-base-3.4.1 | py37hb018525_0 7.2 MB conda-forge
mesalib-18.0.0 | hb6cfc13_1 12.6 MB conda-forge
nbconvert-6.0.7 | py37hf985489_3 534 KB conda-forge
nbformat-5.1.3 | pyhd8ed1ab_0 47 KB conda-forge
nest-asyncio-1.5.1 | pyhd8ed1ab_0 9 KB conda-forge
notebook-6.3.0 | pyha770c72_1 6.1 MB conda-forge
numpy-1.20.2 | py37h84c02c4_0 5.5 MB conda-forge
olefile-0.46 | pyh9f0ad1d_1 32 KB conda-forge
openjpeg-2.4.0 | h6cbf5cd_0 446 KB conda-forge
openssl-1.1.1k | h0d85af4_0 1.9 MB conda-forge
pandas-1.2.4 | py37hb23ed4d_0 10.4 MB conda-forge
pandocfilters-1.4.2 | py_1 9 KB conda-forge
parse-1.19.0 | pyh44b312d_0 22 KB conda-forge
parso-0.8.2 | pyhd8ed1ab_0 68 KB conda-forge
pexpect-4.8.0 | pyh9f0ad1d_2 47 KB conda-forge
pickleshare-0.7.5 | py_1003 9 KB conda-forge
pillow-8.1.2 | py37hd4e48bc_1 656 KB conda-forge
progressbar2-3.53.1 | pyh9f0ad1d_0 25 KB conda-forge
prometheus_client-0.10.1 | pyhd8ed1ab_0 46 KB conda-forge
pycparser-2.20 | pyh9f0ad1d_2 94 KB conda-forge
pyopengl-3.1.5 | py_0 854 KB conda-forge
pypubsub-4.0.3 | py_0 44 KB conda-forge
python-dateutil-2.8.1 | py_0 220 KB conda-forge
python-utils-2.5.6 | pyh44b312d_0 15 KB conda-forge
python_abi-3.7 | 1_cp37m 4 KB conda-forge
scipy-1.6.2 | py37h866764c_0 18.4 MB conda-forge
send2trash-1.5.0 | py_0 12 KB conda-forge
sphinx-3.5.4 | pyh44b312d_0 1.4 MB conda-forge
sphinx_rtd_theme-0.5.2 | pyhd8ed1ab_1 6.3 MB conda-forge
sphinxcontrib-applehelp-1.0.2| py_0 28 KB conda-forge
sphinxcontrib-devhelp-1.0.2| py_0 22 KB conda-forge
sphinxcontrib-htmlhelp-1.0.3| py_0 27 KB conda-forge
sphinxcontrib-jsmath-1.0.1 | py_0 7 KB conda-forge
sphinxcontrib-qthelp-1.0.3 | py_0 25 KB conda-forge
sphinxcontrib-serializinghtml-1.1.4| py_0 24 KB conda-forge
terminado-0.9.4 | py37hf985489_0 26 KB conda-forge
testpath-0.4.4 | py_0 85 KB conda-forge
traitlets-5.0.5 | py_0 81 KB conda-forge
trimesh-3.9.14 | pyh44b312d_0 506 KB conda-forge
typing_extensions-3.7.4.3 | py_0 25 KB conda-forge
urllib3-1.26.4 | pyhd8ed1ab_0 99 KB conda-forge
wcwidth-0.2.5 | pyh9f0ad1d_2 33 KB conda-forge
webencodings-0.5.1 | py_1 12 KB conda-forge
wxnatpy-0.3.2 | py_0 19 KB conda-forge
wxpython-4.1.1 | py37h65de6b0_1 18.3 MB conda-forge
xarray-0.17.0 | pyhd8ed1ab_0 561 KB conda-forge
xnat-0.3.26 | pyhd8ed1ab_0 49 KB conda-forge
zstd-1.4.9 | h582d3a0_0 460 KB conda-forge
------------------------------------------------------------
Total: 153.5 MB
The following NEW packages will be INSTALLED:
alabaster conda-forge/noarch::alabaster-0.7.12-py_0
appnope conda-forge/osx-64::appnope-0.1.2-py37hf985489_1
argon2-cffi conda-forge/osx-64::argon2-cffi-20.1.0-py37hf967b71_2
async_generator conda-forge/noarch::async_generator-1.10-py_0
attrs conda-forge/noarch::attrs-20.3.0-pyhd3deb0d_0
babel conda-forge/noarch::babel-2.9.0-pyhd3deb0d_0
backcall conda-forge/noarch::backcall-0.2.0-pyh9f0ad1d_0
backports conda-forge/noarch::backports-1.0-py_2
backports.functoo~ conda-forge/noarch::backports.functools_lru_cache-1.6.4-pyhd8ed1ab_0
backports.lzma conda-forge/osx-64::backports.lzma-0.0.14-py37hcd8ae14_3
bleach conda-forge/noarch::bleach-3.3.0-pyh44b312d_0
brotlipy conda-forge/osx-64::brotlipy-0.7.0-py37hf967b71_1001
c-ares conda-forge/osx-64::c-ares-1.17.1-h0d85af4_1
cached-property conda-forge/noarch::cached-property-1.5.2-hd8ed1ab_1
cached_property conda-forge/noarch::cached_property-1.5.2-pyha770c72_1
cffi conda-forge/osx-64::cffi-1.14.5-py37h4d371b4_0
chardet conda-forge/osx-64::chardet-4.0.0-py37hf985489_1
colorama conda-forge/noarch::colorama-0.4.4-pyh9f0ad1d_0
cryptography conda-forge/osx-64::cryptography-3.4.7-py37hce4a858_0
cycler conda-forge/noarch::cycler-0.10.0-py_2
dcm2niix conda-forge/osx-64::dcm2niix-1.0.20210317-h940c156_0
decorator conda-forge/noarch::decorator-5.0.7-pyhd8ed1ab_0
defusedxml conda-forge/noarch::defusedxml-0.7.1-pyhd8ed1ab_0
docutils conda-forge/osx-64::docutils-0.15.2-py37hf985489_1
entrypoints conda-forge/noarch::entrypoints-0.3-pyhd8ed1ab_1003
expat conda-forge/osx-64::expat-2.3.0-he49afe7_0
file-tree conda-forge/noarch::file-tree-0.3.5-pyhd8ed1ab_0
file-tree-fsl conda-forge/noarch::file-tree-fsl-0.1.5-pyhd8ed1ab_0
freetype conda-forge/osx-64::freetype-2.10.4-h4cff582_1
fsleyes conda-forge/osx-64::fsleyes-1.0.1-py37hf985489_0
fsleyes-props conda-forge/noarch::fsleyes-props-1.7.2-pyhd8ed1ab_0
fsleyes-widgets conda-forge/noarch::fsleyes-widgets-0.11.3-pyhd8ed1ab_0
fslpy conda-forge/noarch::fslpy-3.6.0-pyh59e0f4d_0
gettext conda-forge/osx-64::gettext-0.19.8.1-h7937167_1005
h5py conda-forge/osx-64::h5py-3.2.1-nompi_py37hdf859c4_100
hdf5 conda-forge/osx-64::hdf5-1.10.6-nompi_hc5d9132_1114
idna conda-forge/noarch::idna-2.10-pyh9f0ad1d_0
imagesize conda-forge/noarch::imagesize-1.2.0-py_0
importlib-metadata conda-forge/osx-64::importlib-metadata-3.10.1-py37hf985489_0
indexed_gzip conda-forge/osx-64::indexed_gzip-1.5.3-py37hd6c3fc7_0
ipykernel conda-forge/osx-64::ipykernel-5.5.3-py37h85f7c60_0
ipython conda-forge/osx-64::ipython-7.22.0-py37h85f7c60_0
ipython_genutils conda-forge/noarch::ipython_genutils-0.2.0-py_1
isodate conda-forge/noarch::isodate-0.6.0-py_1
jedi conda-forge/osx-64::jedi-0.18.0-py37hf985489_2
jinja2 conda-forge/noarch::jinja2-2.11.3-pyh44b312d_0
jpeg conda-forge/osx-64::jpeg-9d-hbcb3906_0
jsonschema conda-forge/noarch::jsonschema-3.2.0-pyhd8ed1ab_3
jupyter_client conda-forge/noarch::jupyter_client-6.1.12-pyhd8ed1ab_0
jupyter_core conda-forge/osx-64::jupyter_core-4.7.1-py37hf985489_0
jupyterlab_pygmen~ conda-forge/noarch::jupyterlab_pygments-0.1.2-pyh9f0ad1d_0
kiwisolver conda-forge/osx-64::kiwisolver-1.3.1-py37h70f7d40_1
krb5 conda-forge/osx-64::krb5-1.17.2-h60d9502_0
lcms2 conda-forge/osx-64::lcms2-2.12-h577c468_0
libblas conda-forge/osx-64::libblas-3.9.0-8_openblas
libcblas conda-forge/osx-64::libcblas-3.9.0-8_openblas
libcurl conda-forge/osx-64::libcurl-7.76.1-h8ef9fac_1
libedit conda-forge/osx-64::libedit-3.1.20191231-h0678c8f_2
libev conda-forge/osx-64::libev-4.33-haf1e3a3_1
libgfortran conda-forge/osx-64::libgfortran-5.0.0-9_3_0_h6c81a4c_22
libgfortran5 conda-forge/osx-64::libgfortran5-9.3.0-h6c81a4c_22
libiconv conda-forge/osx-64::libiconv-1.16-haf1e3a3_0
liblapack conda-forge/osx-64::liblapack-3.9.0-8_openblas
libnghttp2 conda-forge/osx-64::libnghttp2-1.43.0-h07e645a_0
libopenblas conda-forge/osx-64::libopenblas-0.3.12-openmp_h54245bb_1
libpng conda-forge/osx-64::libpng-1.6.37-h7cec526_2
libsodium conda-forge/osx-64::libsodium-1.0.18-hbcb3906_1
libspatialindex conda-forge/osx-64::libspatialindex-1.9.3-h1c7c35f_3
libssh2 conda-forge/osx-64::libssh2-1.9.0-h52ee1ee_6
libtiff conda-forge/osx-64::libtiff-4.2.0-h355d032_0
libwebp-base conda-forge/osx-64::libwebp-base-1.2.0-h0d85af4_2
llvm-openmp conda-forge/osx-64::llvm-openmp-11.1.0-hda6cdc1_1
lz4-c conda-forge/osx-64::lz4-c-1.9.3-h046ec9c_0
markupsafe conda-forge/osx-64::markupsafe-1.1.1-py37hf967b71_3
matplotlib-base conda-forge/osx-64::matplotlib-base-3.4.1-py37hb018525_0
mesalib conda-forge/osx-64::mesalib-18.0.0-hb6cfc13_1
mistune conda-forge/osx-64::mistune-0.8.4-py37hf967b71_1003
nbclient conda-forge/noarch::nbclient-0.5.3-pyhd8ed1ab_0
nbconvert conda-forge/osx-64::nbconvert-6.0.7-py37hf985489_3
nbformat conda-forge/noarch::nbformat-5.1.3-pyhd8ed1ab_0
nest-asyncio conda-forge/noarch::nest-asyncio-1.5.1-pyhd8ed1ab_0
nibabel conda-forge/noarch::nibabel-3.2.1-pyhd8ed1ab_0
notebook conda-forge/noarch::notebook-6.3.0-pyha770c72_1
numpy conda-forge/osx-64::numpy-1.20.2-py37h84c02c4_0
olefile conda-forge/noarch::olefile-0.46-pyh9f0ad1d_1
openjpeg conda-forge/osx-64::openjpeg-2.4.0-h6cbf5cd_0
packaging conda-forge/noarch::packaging-20.9-pyh44b312d_0
pandas conda-forge/osx-64::pandas-1.2.4-py37hb23ed4d_0
pandoc conda-forge/osx-64::pandoc-2.13-h0d85af4_0
pandocfilters conda-forge/noarch::pandocfilters-1.4.2-py_1
parse conda-forge/noarch::parse-1.19.0-pyh44b312d_0
parso conda-forge/noarch::parso-0.8.2-pyhd8ed1ab_0
pathlib2 conda-forge/osx-64::pathlib2-2.3.5-py37hf985489_3
pexpect conda-forge/noarch::pexpect-4.8.0-pyh9f0ad1d_2
pickleshare conda-forge/noarch::pickleshare-0.7.5-py_1003
pillow conda-forge/osx-64::pillow-8.1.2-py37hd4e48bc_1
progressbar2 conda-forge/noarch::progressbar2-3.53.1-pyh9f0ad1d_0
prometheus_client conda-forge/noarch::prometheus_client-0.10.1-pyhd8ed1ab_0
prompt-toolkit conda-forge/noarch::prompt-toolkit-3.0.18-pyha770c72_0
pthread-stubs conda-forge/osx-64::pthread-stubs-0.4-hc929b4f_1001
ptyprocess conda-forge/noarch::ptyprocess-0.7.0-pyhd3deb0d_0
pycparser conda-forge/noarch::pycparser-2.20-pyh9f0ad1d_2
pydicom conda-forge/noarch::pydicom-2.1.2-pyhd3deb0d_0
pygments conda-forge/noarch::pygments-2.8.1-pyhd8ed1ab_0
pyobjc-core conda-forge/osx-64::pyobjc-core-7.1-py37hf985489_0
pyobjc-framework-~ conda-forge/osx-64::pyobjc-framework-cocoa-7.1-py37hf985489_0
pyopengl conda-forge/noarch::pyopengl-3.1.5-py_0
pyopenssl conda-forge/noarch::pyopenssl-20.0.1-pyhd8ed1ab_0
pyparsing conda-forge/noarch::pyparsing-2.4.7-pyh9f0ad1d_0
pypubsub conda-forge/noarch::pypubsub-4.0.3-py_0
pyrsistent conda-forge/osx-64::pyrsistent-0.17.3-py37hf967b71_2
pysocks conda-forge/osx-64::pysocks-1.7.1-py37hf985489_3
python-dateutil conda-forge/noarch::python-dateutil-2.8.1-py_0
python-utils conda-forge/noarch::python-utils-2.5.6-pyh44b312d_0
python.app conda-forge/osx-64::python.app-1.3-py37hf967b71_4
python_abi conda-forge/osx-64::python_abi-3.7-1_cp37m
pytz conda-forge/noarch::pytz-2021.1-pyhd8ed1ab_0
pyzmq conda-forge/osx-64::pyzmq-22.0.3-py37h8f778e5_1
requests conda-forge/noarch::requests-2.25.1-pyhd3deb0d_0
rtree conda-forge/osx-64::rtree-0.9.7-py37hf13911c_1
scipy conda-forge/osx-64::scipy-1.6.2-py37h866764c_0
send2trash conda-forge/noarch::send2trash-1.5.0-py_0
six conda-forge/noarch::six-1.15.0-pyh9f0ad1d_0
snowballstemmer conda-forge/noarch::snowballstemmer-2.1.0-pyhd8ed1ab_0
sphinx conda-forge/noarch::sphinx-3.5.4-pyh44b312d_0
sphinx_rtd_theme conda-forge/noarch::sphinx_rtd_theme-0.5.2-pyhd8ed1ab_1
sphinxcontrib-app~ conda-forge/noarch::sphinxcontrib-applehelp-1.0.2-py_0
sphinxcontrib-dev~ conda-forge/noarch::sphinxcontrib-devhelp-1.0.2-py_0
sphinxcontrib-htm~ conda-forge/noarch::sphinxcontrib-htmlhelp-1.0.3-py_0
sphinxcontrib-jsm~ conda-forge/noarch::sphinxcontrib-jsmath-1.0.1-py_0
sphinxcontrib-qth~ conda-forge/noarch::sphinxcontrib-qthelp-1.0.3-py_0
sphinxcontrib-ser~ conda-forge/noarch::sphinxcontrib-serializinghtml-1.1.4-py_0
terminado conda-forge/osx-64::terminado-0.9.4-py37hf985489_0
testpath conda-forge/noarch::testpath-0.4.4-py_0
tornado conda-forge/osx-64::tornado-6.1-py37hf967b71_1
traitlets conda-forge/noarch::traitlets-5.0.5-py_0
trimesh conda-forge/noarch::trimesh-3.9.14-pyh44b312d_0
typing_extensions conda-forge/noarch::typing_extensions-3.7.4.3-py_0
urllib3 conda-forge/noarch::urllib3-1.26.4-pyhd8ed1ab_0
wcwidth conda-forge/noarch::wcwidth-0.2.5-pyh9f0ad1d_2
webencodings conda-forge/noarch::webencodings-0.5.1-py_1
wxnatpy conda-forge/noarch::wxnatpy-0.3.2-py_0
wxpython conda-forge/osx-64::wxpython-4.1.1-py37h65de6b0_1
xarray conda-forge/noarch::xarray-0.17.0-pyhd8ed1ab_0
xnat conda-forge/noarch::xnat-0.3.26-pyhd8ed1ab_0
zeromq conda-forge/osx-64::zeromq-4.3.4-h1c7c35f_0
zipp conda-forge/noarch::zipp-3.4.1-pyhd8ed1ab_0
zstd conda-forge/osx-64::zstd-1.4.9-h582d3a0_0
The following packages will be UPDATED:
certifi pkgs/main::certifi-2020.12.5-py37hecd~ --> conda-forge::certifi-2020.12.5-py37hf985489_1
libcxx pkgs/main::libcxx-10.0.0-1 --> conda-forge::libcxx-11.1.0-habf9029_0
The following packages will be SUPERSEDED by a higher-priority channel:
ca-certificates pkgs/main::ca-certificates-2021.4.13-~ --> conda-forge::ca-certificates-2020.12.5-h033912b_0
openssl pkgs/main::openssl-1.1.1k-h9ed2024_0 --> conda-forge::openssl-1.1.1k-h0d85af4_0
Proceed ([y]/n)?
Downloading and Extracting Packages
parso-0.8.2 | 68 KB | ################################################################# | 100%
prometheus_client-0. | 46 KB | ################################################################# | 100%
nbconvert-6.0.7 | 534 KB | ################################################################# | 100%
ipython-7.22.0 | 1.1 MB | ################################################################# | 100%
libgfortran5-9.3.0 | 1.7 MB | ################################################################# | 100%
wxnatpy-0.3.2 | 19 KB | ################################################################# | 100%
scipy-1.6.2 | 18.4 MB | ################################################################# | 100%
fsleyes-1.0.1 | 29.3 MB | ################################################################# | 100%
urllib3-1.26.4 | 99 KB | ################################################################# | 100%
jupyterlab_pygments- | 8 KB | ################################################################# | 100%
openjpeg-2.4.0 | 446 KB | ################################################################# | 100%
attrs-20.3.0 | 41 KB | ################################################################# | 100%
typing_extensions-3. | 25 KB | ################################################################# | 100%
sphinxcontrib-qthelp | 25 KB | ################################################################# | 100%
mesalib-18.0.0 | 12.6 MB | ################################################################# | 100%
file-tree-0.3.5 | 21 KB | ################################################################# | 100%
parse-1.19.0 | 22 KB | ################################################################# | 100%
fsleyes-props-1.7.2 | 90 KB | ################################################################# | 100%
expat-2.3.0 | 131 KB | ################################################################# | 100%
fsleyes-widgets-0.11 | 502 KB | ################################################################# | 100%
sphinxcontrib-appleh | 28 KB | ################################################################# | 100%
imagesize-1.2.0 | 8 KB | ################################################################# | 100%
sphinxcontrib-htmlhe | 27 KB | ################################################################# | 100%
backports.functools_ | 9 KB | ################################################################# | 100%
libsodium-1.0.18 | 516 KB | ################################################################# | 100%
libiconv-1.16 | 1.3 MB | ################################################################# | 100%
python_abi-3.7 | 4 KB | ################################################################# | 100%
sphinxcontrib-serial | 24 KB | ################################################################# | 100%
olefile-0.46 | 32 KB | ################################################################# | 100%
notebook-6.3.0 | 6.1 MB | ################################################################# | 100%
dcm2niix-1.0.2021031 | 196 KB | ################################################################# | 100%
xnat-0.3.26 | 49 KB | ################################################################# | 100%
async_generator-1.10 | 18 KB | ################################################################# | 100%
matplotlib-base-3.4. | 7.2 MB | ################################################################# | 100%
cryptography-3.4.7 | 754 KB | ################################################################# | 100%
idna-2.10 | 52 KB | ################################################################# | 100%
libedit-3.1.20191231 | 103 KB | ################################################################# | 100%
file-tree-fsl-0.1.5 | 11 KB | ################################################################# | 100%
send2trash-1.5.0 | 12 KB | ################################################################# | 100%
h5py-3.2.1 | 1.1 MB | ################################################################# | 100%
numpy-1.20.2 | 5.5 MB | ################################################################# | 100%
libev-4.33 | 99 KB | ################################################################# | 100%
backcall-0.2.0 | 13 KB | ################################################################# | 100%
zstd-1.4.9 | 460 KB | ################################################################# | 100%
ipython_genutils-0.2 | 21 KB | ################################################################# | 100%
backports-1.0 | 4 KB | ################################################################# | 100%
ipykernel-5.5.3 | 166 KB | ################################################################# | 100%
python-dateutil-2.8. | 220 KB | ################################################################# | 100%
lz4-c-1.9.3 | 155 KB | ################################################################# | 100%
importlib-metadata-3 | 26 KB | ################################################################# | 100%
wxpython-4.1.1 | 18.3 MB | ################################################################# | 100%
xarray-0.17.0 | 561 KB | ################################################################# | 100%
sphinxcontrib-devhel | 22 KB | ################################################################# | 100%
entrypoints-0.3 | 8 KB | ################################################################# | 100%
wcwidth-0.2.5 | 33 KB | ################################################################# | 100%
python-utils-2.5.6 | 15 KB | ################################################################# | 100%
pickleshare-0.7.5 | 9 KB | ################################################################# | 100%
llvm-openmp-11.1.0 | 268 KB | ################################################################# | 100%
pypubsub-4.0.3 | 44 KB | ################################################################# | 100%
libgfortran-5.0.0 | 19 KB | ################################################################# | 100%
fslpy-3.6.0 | 3.7 MB | ################################################################# | 100%
pillow-8.1.2 | 656 KB | ################################################################# | 100%
babel-2.9.0 | 6.2 MB | ################################################################# | 100%
alabaster-0.7.12 | 15 KB | ################################################################# | 100%
openssl-1.1.1k | 1.9 MB | ################################################################# | 100%
webencodings-0.5.1 | 12 KB | ################################################################# | 100%
pexpect-4.8.0 | 47 KB | ################################################################# | 100%
libcurl-7.76.1 | 309 KB | ################################################################# | 100%
trimesh-3.9.14 | 506 KB | ################################################################# | 100%
nbformat-5.1.3 | 47 KB | ################################################################# | 100%
isodate-0.6.0 | 25 KB | ################################################################# | 100%
sphinxcontrib-jsmath | 7 KB | ################################################################# | 100%
pandocfilters-1.4.2 | 9 KB | ################################################################# | 100%
decorator-5.0.7 | 11 KB | ################################################################# | 100%
jpeg-9d | 250 KB | ################################################################# | 100%
terminado-0.9.4 | 26 KB | ################################################################# | 100%
pyopengl-3.1.5 | 854 KB | ################################################################# | 100%
libpng-1.6.37 | 313 KB | ################################################################# | 100%
sphinx-3.5.4 | 1.4 MB | ################################################################# | 100%
progressbar2-3.53.1 | 25 KB | ################################################################# | 100%
pandas-1.2.4 | 10.4 MB | ################################################################# | 100%
libopenblas-0.3.12 | 8.8 MB | ################################################################# | 100%
sphinx_rtd_theme-0.5 | 6.3 MB | ################################################################# | 100%
testpath-0.4.4 | 85 KB | ################################################################# | 100%
cycler-0.10.0 | 9 KB | ################################################################# | 100%
pycparser-2.20 | 94 KB | ################################################################# | 100%
traitlets-5.0.5 | 81 KB | ################################################################# | 100%
colorama-0.4.4 | 18 KB | ################################################################# | 100%
nest-asyncio-1.5.1 | 9 KB | ################################################################# | 100%
hdf5-1.10.6 | 3.1 MB | ################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Collecting package metadata (current_repodata.json): done
Solving environment: failed with initial frozen solve. Retrying with flexible solve.
Collecting package metadata (repodata.json): \ WARNING conda.models.version:get_matcher(537): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 2.*, but conda is ignoring the .* and treating it as 2
WARNING conda.models.version:get_matcher(537): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 1.*, but conda is ignoring the .* and treating it as 1
/ WARNING conda.models.version:get_matcher(537): Using .* with relational operator is superfluous and deprecated and will be removed in a future version of conda. Your spec was 3.6.*, but conda is ignoring the .* and treating it as 3.6
done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.9.2
latest version: 4.10.1
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474
added / updated specs:
- wxpython=4.0.7
The following packages will be downloaded:
package | build
---------------------------|-----------------
wxpython-4.0.7.post2 | py37hf8388d2_3 16.8 MB conda-forge
------------------------------------------------------------
Total: 16.8 MB
The following packages will be DOWNGRADED:
wxpython 4.1.1-py37h65de6b0_1 --> 4.0.7.post2-py37hf8388d2_3
Proceed ([y]/n)?
Downloading and Extracting Packages
wxpython-4.0.7.post2 | 16.8 MB | ################################################################# | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Installing fsleyes-plugin-shimming-toolbox
Processing /Users/alex/code/fsleyes-plugin-shimming-toolbox
Collecting imageio
Using cached imageio-2.9.0-py3-none-any.whl (3.3 MB)
Requirement already satisfied: numpy in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from imageio->fsleyes-plugin-shimming-toolbox==0.0.0) (1.20.2)
Requirement already satisfied: pillow in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from imageio->fsleyes-plugin-shimming-toolbox==0.0.0) (8.1.2)
Building wheels for collected packages: fsleyes-plugin-shimming-toolbox
Building wheel for fsleyes-plugin-shimming-toolbox (setup.py) ... done
Created wheel for fsleyes-plugin-shimming-toolbox: filename=fsleyes_plugin_shimming_toolbox-0.0.0-py3-none-any.whl size=69959 sha256=4ddbc9753a7c8e3169029fa2f49db20ce6202b08a56bcf7a9bc0f890b1563633
Stored in directory: /Users/alex/Library/Caches/pip/wheels/21/79/81/1e069b98384673c7765f6992ced1b48b8c18a41ff71bc8b923
Successfully built fsleyes-plugin-shimming-toolbox
Installing collected packages: imageio, fsleyes-plugin-shimming-toolbox
Successfully installed fsleyes-plugin-shimming-toolbox-0.0.0 imageio-2.9.0
bash installer/install_shimming_toolbox.sh
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
100 154 0 154 0 0 518 0 --:--:-- --:--:-- --:--:-- 518
100 154k 0 154k 0 0 203k 0 --:--:-- --:--:-- --:--:-- 1176k
Processing /Users/alex/code/shimming-toolbox-0.1-beta
Collecting click
Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Collecting dcm2bids==2.1.4
Using cached dcm2bids-2.1.4-py2.py3-none-any.whl (28 kB)
Collecting numpy~=1.19.0
Downloading numpy-1.19.5-cp37-cp37m-macosx_10_9_x86_64.whl (15.6 MB)
|████████████████████████████████| 15.6 MB 2.4 MB/s
Collecting phantominator~=0.6.4
Using cached phantominator-0.6.4-py3-none-any.whl (39 kB)
Collecting nibabel~=3.1.1
Using cached nibabel-3.1.1-py3-none-any.whl (3.3 MB)
Requirement already satisfied: requests in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from shimmingtoolbox==0.1.0) (2.25.1)
Collecting scipy~=1.5.0
Downloading scipy-1.5.4-cp37-cp37m-macosx_10_9_x86_64.whl (28.7 MB)
|████████████████████████████████| 28.7 MB 2.6 MB/s
Collecting tqdm
Downloading tqdm-4.60.0-py2.py3-none-any.whl (75 kB)
|████████████████████████████████| 75 kB 7.5 MB/s
Collecting matplotlib~=3.1.2
Downloading matplotlib-3.1.3-cp37-cp37m-macosx_10_9_x86_64.whl (13.2 MB)
|████████████████████████████████| 13.2 MB 23.3 MB/s
Collecting psutil~=5.7.3
Using cached psutil-5.7.3.tar.gz (465 kB)
Collecting pytest~=4.6.3
Using cached pytest-4.6.11-py2.py3-none-any.whl (231 kB)
Collecting pytest-cov~=2.5.1
Using cached pytest_cov-2.5.1-py2.py3-none-any.whl (21 kB)
Collecting sklearn~=0.0
Using cached sklearn-0.0.tar.gz (1.1 kB)
Collecting importlib-metadata~=1.0
Downloading importlib_metadata-1.7.0-py2.py3-none-any.whl (31 kB)
Collecting future
Using cached future-0.18.2.tar.gz (829 kB)
Requirement already satisfied: zipp>=0.5 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from importlib-metadata~=1.0->shimmingtoolbox==0.1.0) (3.4.1)
Requirement already satisfied: python-dateutil>=2.1 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from matplotlib~=3.1.2->shimmingtoolbox==0.1.0) (2.8.1)
Requirement already satisfied: cycler>=0.10 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from matplotlib~=3.1.2->shimmingtoolbox==0.1.0) (0.10.0)
Requirement already satisfied: pyparsing!=2.0.4,!=2.1.2,!=2.1.6,>=2.0.1 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from matplotlib~=3.1.2->shimmingtoolbox==0.1.0) (2.4.7)
Requirement already satisfied: kiwisolver>=1.0.1 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from matplotlib~=3.1.2->shimmingtoolbox==0.1.0) (1.3.1)
Requirement already satisfied: six in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from cycler>=0.10->matplotlib~=3.1.2->shimmingtoolbox==0.1.0) (1.15.0)
Requirement already satisfied: packaging>=14.3 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from nibabel~=3.1.1->shimmingtoolbox==0.1.0) (20.9)
Collecting ssfp>=0.4.2
Downloading ssfp-1.0.0-py3-none-any.whl (60 kB)
|████████████████████████████████| 60 kB 6.8 MB/s
Collecting pluggy<1.0,>=0.12
Using cached pluggy-0.13.1-py2.py3-none-any.whl (18 kB)
Collecting atomicwrites>=1.0
Using cached atomicwrites-1.4.0-py2.py3-none-any.whl (6.8 kB)
Collecting py>=1.5.0
Downloading py-1.10.0-py2.py3-none-any.whl (97 kB)
|████████████████████████████████| 97 kB 10.7 MB/s
Requirement already satisfied: attrs>=17.4.0 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from pytest~=4.6.3->shimmingtoolbox==0.1.0) (20.3.0)
Collecting more-itertools>=4.0.0
Downloading more_itertools-8.7.0-py3-none-any.whl (48 kB)
|████████████████████████████████| 48 kB 15.8 MB/s
Requirement already satisfied: wcwidth in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from pytest~=4.6.3->shimmingtoolbox==0.1.0) (0.2.5)
Collecting coverage>=3.7.1
Downloading coverage-5.5-cp37-cp37m-macosx_10_9_x86_64.whl (207 kB)
|████████████████████████████████| 207 kB 18.9 MB/s
Collecting scikit-learn
Downloading scikit_learn-0.24.1-cp37-cp37m-macosx_10_13_x86_64.whl (7.2 MB)
|████████████████████████████████| 7.2 MB 23.1 MB/s
Collecting ellipsinator>=0.2.1
Using cached ellipsinator-0.2.1-py3-none-any.whl (33 kB)
Collecting scikit-image>=0.15.0
Downloading scikit_image-0.18.1-cp37-cp37m-macosx_10_9_x86_64.whl (12.7 MB)
|████████████████████████████████| 12.7 MB 25.4 MB/s
Requirement already satisfied: imageio>=2.3.0 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from scikit-image>=0.15.0->ssfp>=0.4.2->phantominator~=0.6.4->shimmingtoolbox==0.1.0) (2.9.0)
Requirement already satisfied: pillow!=7.1.0,!=7.1.1,>=4.3.0 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from scikit-image>=0.15.0->ssfp>=0.4.2->phantominator~=0.6.4->shimmingtoolbox==0.1.0) (8.1.2)
Collecting PyWavelets>=1.1.1
Downloading PyWavelets-1.1.1-cp37-cp37m-macosx_10_9_x86_64.whl (4.3 MB)
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Collecting networkx>=2.0
Downloading networkx-2.5.1-py3-none-any.whl (1.6 MB)
|████████████████████████████████| 1.6 MB 34.8 MB/s
Collecting tifffile>=2019.7.26
Downloading tifffile-2021.4.8-py3-none-any.whl (165 kB)
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Collecting decorator<5,>=4.3
Using cached decorator-4.4.2-py2.py3-none-any.whl (9.2 kB)
Requirement already satisfied: urllib3<1.27,>=1.21.1 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from requests->shimmingtoolbox==0.1.0) (1.26.4)
Requirement already satisfied: chardet<5,>=3.0.2 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from requests->shimmingtoolbox==0.1.0) (4.0.0)
Requirement already satisfied: idna<3,>=2.5 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from requests->shimmingtoolbox==0.1.0) (2.10)
Requirement already satisfied: certifi>=2017.4.17 in /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/lib/python3.7/site-packages (from requests->shimmingtoolbox==0.1.0) (2020.12.5)
Collecting threadpoolctl>=2.0.0
Using cached threadpoolctl-2.1.0-py3-none-any.whl (12 kB)
Collecting joblib>=0.11
Downloading joblib-1.0.1-py3-none-any.whl (303 kB)
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Building wheels for collected packages: shimmingtoolbox, psutil, sklearn, future
Building wheel for shimmingtoolbox (setup.py) ... done
Created wheel for shimmingtoolbox: filename=shimmingtoolbox-0.1.0-py3-none-any.whl size=67371 sha256=8bb17354f37be737af5a07ab7bad398795e285b244964919d192508d5caf3f6a
Stored in directory: /Users/alex/Library/Caches/pip/wheels/e3/33/eb/6149d2cf74a5c7a2b4a1c36d6237117521a43de7a3b9ca5cd4
Building wheel for psutil (setup.py) ... done
Created wheel for psutil: filename=psutil-5.7.3-cp37-cp37m-macosx_10_9_x86_64.whl size=234665 sha256=5c36aaee9018cbb8b7725d46fc94dca35dbc66cdfe4ae7a53bbaa4357a604715
Stored in directory: /Users/alex/Library/Caches/pip/wheels/f0/4b/57/d037639271e326da3e80e0ddc37bd3d5da7bbf48b3173be557
Building wheel for sklearn (setup.py) ... done
Created wheel for sklearn: filename=sklearn-0.0-py2.py3-none-any.whl size=1316 sha256=eb82b0c7829b912a5f2bb57dcc3867cc9cf0bd9a7a7d8fc0076039955fb144f7
Stored in directory: /Users/alex/Library/Caches/pip/wheels/46/ef/c3/157e41f5ee1372d1be90b09f74f82b10e391eaacca8f22d33e
Building wheel for future (setup.py) ... done
Created wheel for future: filename=future-0.18.2-py3-none-any.whl size=491059 sha256=bfbf729f880f66c44df19dec523fa8ebdca0dad7920a7ed0f8b38325451fc9fc
Stored in directory: /Users/alex/Library/Caches/pip/wheels/56/b0/fe/4410d17b32f1f0c3cf54cdfb2bc04d7b4b8f4ae377e2229ba0
Successfully built shimmingtoolbox psutil sklearn future
Installing collected packages: numpy, decorator, tifffile, scipy, PyWavelets, networkx, matplotlib, importlib-metadata, tqdm, threadpoolctl, scikit-image, py, pluggy, more-itertools, joblib, ellipsinator, atomicwrites, ssfp, scikit-learn, pytest, future, coverage, sklearn, pytest-cov, psutil, phantominator, nibabel, dcm2bids, click, shimmingtoolbox
Attempting uninstall: numpy
Found existing installation: numpy 1.20.2
Uninstalling numpy-1.20.2:
Successfully uninstalled numpy-1.20.2
Attempting uninstall: decorator
Found existing installation: decorator 5.0.7
Uninstalling decorator-5.0.7:
Successfully uninstalled decorator-5.0.7
Attempting uninstall: scipy
Found existing installation: scipy 1.6.2
Uninstalling scipy-1.6.2:
Successfully uninstalled scipy-1.6.2
Attempting uninstall: matplotlib
Found existing installation: matplotlib 3.4.1
Uninstalling matplotlib-3.4.1:
Successfully uninstalled matplotlib-3.4.1
Attempting uninstall: importlib-metadata
Found existing installation: importlib-metadata 3.10.1
Uninstalling importlib-metadata-3.10.1:
Successfully uninstalled importlib-metadata-3.10.1
Attempting uninstall: nibabel
Found existing installation: nibabel 3.2.1
Uninstalling nibabel-3.2.1:
Successfully uninstalled nibabel-3.2.1
ERROR: pip's dependency resolver does not currently take into account all the packages that are installed. This behaviour is the source of the following dependency conflicts.
fslpy 3.6.0 requires dataclasses, which is not installed.
Successfully installed PyWavelets-1.1.1 atomicwrites-1.4.0 click-7.1.2 coverage-5.5 dcm2bids-2.1.4 decorator-4.4.2 ellipsinator-0.2.1 future-0.18.2 importlib-metadata-1.7.0 joblib-1.0.1 matplotlib-3.1.3 more-itertools-8.7.0 networkx-2.5.1 nibabel-3.1.1 numpy-1.19.5 phantominator-0.6.4 pluggy-0.13.1 psutil-5.7.3 py-1.10.0 pytest-4.6.11 pytest-cov-2.5.1 scikit-image-0.18.1 scikit-learn-0.24.1 scipy-1.5.4 shimmingtoolbox-0.1.0 sklearn-0.0 ssfp-1.0.0 threadpoolctl-2.1.0 tifffile-2021.4.8 tqdm-4.60.0
Creating launchers for Python scripts...
/Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_check_dependencies /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_dicom_to_nifti /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_download_data /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_dump_env_info /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_mask /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_prepare_fieldmap /Users/alex/shimming_toolbox/python/envs/pst_venv_1267b18e73341ad94da34474/bin/st_realtime_zshim
Open a new Terminal window to load environment variables, or run: source /Users/alex/.zshrc
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