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Alexis Lucattini alexiswl

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alexiswl / adding_comments_to_ruamel.ipynb
Created October 23, 2021 04:26
Adding comments to ruamel
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@alexiswl
alexiswl / Active Supermarket Exposure Sites (VIC).ipynb
Last active August 26, 2021 01:13
Active Supermarket Exposure Sites (VIC)
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alexiswl / bcl-convert-3.7.5.packed.cwl.json
Created April 15, 2021 08:35
BCL-Convert Packed Workflow (Debugging readability through CWL API)
{
"$graph": [
{
"class": "ExpressionTool",
"requirements": [
{
"class": "InlineJavascriptRequirement"
},
{
"types": [
@alexiswl
alexiswl / Dockerfile
Last active April 7, 2020 03:07
Sortmerna Cwltool
FROM ubuntu:xenial
ARG SORTMERNA_REPO="https://github.com/biocore/sortmerna"
ARG SORTMERNA_VERSION="4.2.0"
ENV PATH="/opt/bin:$PATH"
ENV RRNA_REF_DIR="/opt/rRNA_databases"
RUN ( echo "APT installations" && \
apt-get update -qq && \
@alexiswl
alexiswl / keybase.md
Created March 2, 2020 00:47
Keybase declaration

Keybase proof

I hereby claim:

  • I am alexiswl on github.
  • I am alexiswl (https://keybase.io/alexiswl) on keybase.
  • I have a public key ASAH2H6mMaZdeiNlFc2rDlluZr-cmikoMmjyJKXkj-P6VQo

To claim this, I am signing this object:

@alexiswl
alexiswl / Household Gross Earnings Per Week
Last active June 23, 2019 12:10
A jupyter notebook to analyse an ABS excel spreadsheet
{
"cells": [
{
"cell_type": "markdown",
"metadata": {},
"source": [
"# Gross Earnings Per Week"
]
},
{
@alexiswl
alexiswl / create_container_from_quay.py
Last active March 12, 2019 05:39
Generate Singularity Container from a quay
#!/usr/bin/env python3
import yaml
import pandas as pd
import argparse
import os
import in_place
import logging
import shutil
import sys
@alexiswl
alexiswl / cs_pandas_utilities.py
Last active May 31, 2018 02:05
Minimap2 CS String Pandas Implementation: Querying genomic alignments through Pandas Dataframes
#!/usr/bin/env python3
import pandas as pd
import pysam
import re
import numpy as np
def cs_to_pd():
"""