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alexomics/main.py

Created January 8, 2021 17:26
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Guppy Version from FAST5 file
Raw
main.py
from ont_fast5_api.fast5_interface import get_fast5_file
def guppy_from_file(fn):
"""
>>> guppy_from_file("single.fast5")
'3.0.7+427b5a11'
>>> guppy_from_file("multi.fast5")
'3.0.7+427b5a11'
"""
with get_fast5_file(fn, mode="r") as f5:
r = next(f5.get_reads())
return r.get_tracking_id().get("guppy_version")
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