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| import argparse | |
| DEFAULT_SERVER_HOST = "127.0.0.1" | |
| DEFAULT_SERVER_PORT = 5555 | |
| DEFAULT_TIMEOUT = 500 | |
| BASE_ARGS = ( | |
| ( | |
| "Inputs", # GROUP |
alexomics
/ kineticsTools.yaml
Created
June 16, 2020 10:48
Setup for https://github.com/PacificBiosciences/kineticsTools, two ways
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| name: kinetics_tools | |
| channels: | |
| - bioconda | |
| - conda-forge | |
| - defaults | |
| dependencies: | |
| - python>=3.7 | |
| - pip | |
| - pip: | |
| - git+http://github.com/PacificBiosciences/pbcore |
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| from ont_fast5_api.fast5_interface import get_fast5_file | |
| def guppy_from_file(fn): | |
| """ | |
| >>> guppy_from_file("single.fast5") | |
| '3.0.7+427b5a11' | |
| >>> guppy_from_file("multi.fast5") | |
| '3.0.7+427b5a11' | |
| """ |