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Created February 26, 2015 00:26
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debug.sort-bed transcript (fiddlehead test)
Raw
fiddlehead.massif.out.30303.transcript.txt
[areynolds@fiddlehead src]$ pwd
/home/areynolds/proj/sjn/25Feb2015/src
[areynolds@fiddlehead src]$ ./merge-all-dhs.parallel.debug.tcsh
set hotdir = ../data/hotspots
find -L ../data/hotspots/ -maxdepth 2 -mindepth 2 -type f -name *.gz -print0
parallel -0 -X -m zcat {}
valgrind --tool=massif --pages-as-heap=yes --peak-inaccuracy=0.1 /home/sjn/Github/BEDOPS/bedops/applications/b\
ed/sort-bed/bin/debug.sort-bed --max-mem 1G -
==30303== Massif, a heap profiler
==30303== Copyright (C) 2003-2012, and GNU GPL'd, by Nicholas Nethercote
==30303== Using Valgrind-3.8.1 and LibVEX; rerun with -h for copyright info
==30303== Command: /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.sort-bed --max-mem 1G -
==30303==
==30303==
exit 0
[areynolds@fiddlehead src]$ ll
total 48
-rw------- 1 areynolds rexagen 33882 Feb 25 15:40 massif.out.30303
-rwxr-xr-x 1 areynolds rexagen 465 Feb 25 13:46 merge-all-dhs.parallel.debug.tcsh
-rwxr-xr-x 1 areynolds rexagen 468 Feb 25 13:45 merge-all-dhs.parallel.debug.tcsh~
[areynolds@fiddlehead src]$ ms_print massif.out.30303
--------------------------------------------------------------------------------
Command: /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.sort-bed --max-mem 1G -
Massif arguments: --pages-as-heap=yes --peak-inaccuracy=0.1
ms_print arguments: massif.out.30303
--------------------------------------------------------------------------------
GB
1.524^ :
| : #:: ::: ::: ::: :@:::@::
| @: :@: :::::#::::::::::::::::@: @ ::::::::::::::::::::::::::::::
| @@:::@::::: :#:: ::: ::: ::: :@: @ ::: :
| :@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| ::@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| ::@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| ::@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| ::@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| @:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| @:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| :@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| :@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| :@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| :@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| @@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
| @@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
|:@@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
|:@@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
|:@@:@:@@: :@: ::: :#:: ::: ::: ::: :@: @ ::: :
0 +----------------------------------------------------------------------->Ti
0 2.413
Number of snapshots: 71
Detailed snapshots: [2, 4, 8, 10, 15, 16, 17, 22, 32 (peak), 54, 64]
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
0 0 1,191,936 1,191,936 0 0
1 18,915,227,465 258,551,808 258,551,808 0 0
2 37,286,845,120 483,213,312 483,213,312 0 0
100.00% (483,213,312B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->61.75% (298,405,888B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.\
sort-bed)
| ->60.76% (293,601,280B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | ->60.76% (293,601,280B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | ->60.76% (293,601,280B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | ->60.76% (293,601,280B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | ->60.76% (293,601,280B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.99% (4,804,608B) in 1+ places, all below ms_print's threshold (01.00%)
|
->36.26% (175,222,784B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->36.26% (175,222,784B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| ->36.26% (175,222,784B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (\
SortDetails.cpp:313)
| ->36.26% (175,222,784B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cp\
p:836)
| ->36.26% (175,222,784B) 0x405D58: main (Sort.cpp:217)
|
->01.71% (8,253,440B) 0x4CD079: brk (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.sor\
t-bed)
| ->01.71% (8,253,440B) 0x4A2F1A: sbrk (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.\
sort-bed)
| ->01.71% (8,245,248B) 0x47EF77: __default_morecore (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sor\
t-bed/bin/debug.sort-bed)
| | ->01.71% (8,245,248B) 0x47B65D: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->01.68% (8,110,080B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | | ->01.68% (8,110,080B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:342)
| | | ->01.68% (8,110,080B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->01.68% (8,110,080B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->00.03% (135,168B) in 1+ places, all below ms_print's threshold (01.00%)
| |
| ->00.00% (8,192B) in 1+ places, all below ms_print's threshold (01.00%)
|
->00.28% (1,331,200B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
3 59,416,468,783 756,125,696 756,125,696 0 0
4 76,448,816,539 950,050,816 950,050,816 0 0
100.00% (950,050,816B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->64.38% (611,627,008B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.\
sort-bed)
| ->64.13% (609,222,656B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | ->64.13% (609,222,656B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | ->64.13% (609,222,656B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | ->64.13% (609,222,656B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | ->64.13% (609,222,656B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.25% (2,404,352B) in 1+ places, all below ms_print's threshold (01.00%)
|
->34.61% (328,839,168B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->34.61% (328,839,168B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| ->34.61% (328,839,168B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (\
SortDetails.cpp:313)
| ->34.61% (328,839,168B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cp\
p:836)
| ->34.61% (328,839,168B) 0x405D58: main (Sort.cpp:217)
|
->01.01% (9,584,640B) in 2 places, all below massif's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
5 86,032,025,054 1,076,695,040 1,076,695,040 0 0
6 101,926,009,620 1,234,960,384 1,234,960,384 0 0
7 111,498,134,504 1,301,983,232 1,301,983,232 0 0
8 152,529,233,264 1,265,987,584 1,265,987,584 0 0
100.00% (1,265,987,584B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->67.77% (857,960,448B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.\
sort-bed)
| ->67.58% (855,552,000B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | ->62.29% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->62.29% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->62.29% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->62.29% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->05.29% (67,022,848B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->05.29% (67,022,848B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->05.29% (67,022,848B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->05.29% (67,022,848B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->05.29% (67,022,848B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.19% (2,408,448B) in 1+ places, all below ms_print's threshold (01.00%)
|
->31.47% (398,442,496B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->31.47% (398,442,496B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| ->31.47% (398,442,496B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (\
SortDetails.cpp:313)
| ->31.47% (398,442,496B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cp\
p:836)
| ->31.47% (398,442,496B) 0x405D58: main (Sort.cpp:217)
|
->00.76% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
9 164,758,951,488 870,076,416 870,076,416 0 0
10 179,038,436,720 960,589,824 960,589,824 0 0
100.00% (960,589,824B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->99.00% (951,005,184B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug.\
sort-bed)
| ->99.00% (950,996,992B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | ->82.09% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->82.09% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->82.09% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->82.09% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->09.94% (95,444,992B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | | ->09.94% (95,444,992B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | | ->09.94% (95,444,992B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double\
) (SortDetails.cpp:313)
| | | ->09.94% (95,444,992B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:836)
| | | ->09.94% (95,444,992B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->06.98% (67,022,848B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->06.98% (67,022,848B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->06.98% (67,022,848B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->06.98% (67,022,848B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->06.98% (67,022,848B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (8,192B) in 1+ places, all below ms_print's threshold (01.00%)
|
->01.00% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
11 195,195,047,350 1,077,112,832 1,077,112,832 0 0
12 209,066,370,045 1,207,775,232 1,207,775,232 0 0
13 220,801,943,929 1,326,043,136 1,326,043,136 0 0
14 233,264,704,255 1,441,648,640 1,441,648,640 0 0
15 244,883,153,729 1,444,052,992 1,444,052,992 0 0
100.00% (1,444,052,992B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->97.01% (1,400,864,768B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->97.01% (1,400,852,480B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->54.61% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->54.61% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->54.61% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->54.61% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->37.76% (545,300,480B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->37.76% (545,300,480B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->37.76% (545,300,480B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->37.76% (545,300,480B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->37.76% (545,300,480B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->04.64% (67,022,848B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->04.64% (67,022,848B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->04.64% (67,022,848B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->04.64% (67,022,848B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->04.64% (67,022,848B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (12,288B) in 1+ places, all below ms_print's threshold (01.00%)
|
->02.33% (33,603,584B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->02.33% (33,603,584B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->02.33% (33,603,584B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->02.33% (33,603,584B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->02.33% (33,603,584B) 0x405D58: main (Sort.cpp:217)
|
->00.66% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
16 261,171,522,473 1,508,986,880 1,508,986,880 0 0
100.00% (1,508,986,880B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->94.43% (1,425,002,496B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->94.43% (1,424,986,112B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->52.26% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->52.26% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->52.26% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->52.26% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->37.74% (569,434,112B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->37.74% (569,434,112B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->37.74% (569,434,112B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->37.74% (569,434,112B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->37.74% (569,434,112B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->04.44% (67,022,848B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->04.44% (67,022,848B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->04.44% (67,022,848B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->04.44% (67,022,848B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->04.44% (67,022,848B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (16,384B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.93% (74,399,744B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.93% (74,399,744B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.93% (74,399,744B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.93% (74,399,744B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.93% (74,399,744B) 0x405D58: main (Sort.cpp:217)
|
->00.64% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
17 271,257,223,627 1,536,356,352 1,536,356,352 0 0
100.00% (1,536,356,352B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->94.53% (1,452,371,968B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->94.53% (1,452,355,584B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->51.32% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->51.32% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->51.32% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->51.32% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->37.06% (569,434,112B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->37.06% (569,434,112B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->37.06% (569,434,112B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->37.06% (569,434,112B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->37.06% (569,434,112B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->06.14% (94,392,320B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->06.14% (94,392,320B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->06.14% (94,392,320B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->06.14% (94,392,320B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->06.14% (94,392,320B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (16,384B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.84% (74,399,744B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.84% (74,399,744B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.84% (74,399,744B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.84% (74,399,744B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.84% (74,399,744B) 0x405D58: main (Sort.cpp:217)
|
->00.62% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
18 308,071,461,053 1,497,952,256 1,497,952,256 0 0
19 309,236,238,522 1,461,952,512 1,461,952,512 0 0
20 391,506,927,295 1,493,155,840 1,493,155,840 0 0
21 410,911,928,090 1,533,956,096 1,533,956,096 0 0
22 419,161,376,614 1,533,956,096 1,533,956,096 0 0
100.00% (1,533,956,096B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->94.68% (1,452,371,968B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->94.68% (1,452,355,584B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->51.40% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->51.40% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->51.40% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->51.40% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->37.12% (569,434,112B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->37.12% (569,434,112B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->37.12% (569,434,112B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->37.12% (569,434,112B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->37.12% (569,434,112B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->06.15% (94,392,320B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->06.15% (94,392,320B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->06.15% (94,392,320B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->06.15% (94,392,320B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->06.15% (94,392,320B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (16,384B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.69% (71,999,488B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.69% (71,999,488B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.69% (71,999,488B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.69% (71,999,488B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.69% (71,999,488B) 0x405D58: main (Sort.cpp:217)
|
->00.62% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
23 463,553,533,265 1,497,956,352 1,497,956,352 0 0
24 464,714,997,299 1,461,956,608 1,461,956,608 0 0
25 544,219,162,368 1,493,159,936 1,493,159,936 0 0
26 556,340,616,157 1,495,560,192 1,495,560,192 0 0
27 580,126,011,926 1,567,563,776 1,567,563,776 0 0
28 618,618,365,226 1,529,163,776 1,529,163,776 0 0
29 619,764,762,201 1,493,164,032 1,493,164,032 0 0
30 697,961,826,269 1,493,295,104 1,493,295,104 0 0
31 712,512,886,339 1,558,233,088 1,558,233,088 0 0
32 729,036,164,587 1,599,037,440 1,599,037,440 0 0
100.00% (1,599,037,440B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->94.75% (1,515,053,056B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->94.75% (1,515,024,384B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->49.31% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->49.31% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->49.31% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->49.31% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->39.53% (632,102,912B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->39.53% (632,102,912B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->39.53% (632,102,912B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->39.53% (632,102,912B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->39.53% (632,102,912B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->05.90% (94,392,320B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->05.90% (94,392,320B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->05.90% (94,392,320B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->05.90% (94,392,320B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->05.90% (94,392,320B) 0x405D58: main (Sort.cpp:217)
| |
| ->00.00% (28,672B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.65% (74,399,744B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.65% (74,399,744B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.65% (74,399,744B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.65% (74,399,744B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.65% (74,399,744B) 0x405D58: main (Sort.cpp:217)
|
->00.60% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
33 737,190,085,130 1,599,033,344 1,599,033,344 0 0
34 774,039,478,256 1,560,633,344 1,560,633,344 0 0
35 775,173,953,739 1,524,633,600 1,524,633,600 0 0
36 857,762,268,265 1,558,237,184 1,558,237,184 0 0
37 871,511,035,135 1,558,237,184 1,558,237,184 0 0
38 888,813,716,684 1,599,037,440 1,599,037,440 0 0
39 929,062,855,976 1,560,637,440 1,560,637,440 0 0
40 930,190,846,671 1,524,637,696 1,524,637,696 0 0
41 1,019,926,509,469 1,558,241,280 1,558,241,280 0 0
42 1,042,776,729,168 1,596,641,280 1,596,641,280 0 0
43 1,084,049,533,296 1,560,641,536 1,560,641,536 0 0
44 1,085,205,771,532 1,524,641,792 1,524,641,792 0 0
45 1,173,657,610,147 1,558,245,376 1,558,245,376 0 0
46 1,196,813,260,571 1,596,645,376 1,596,645,376 0 0
47 1,239,049,401,445 1,560,645,632 1,560,645,632 0 0
48 1,240,177,384,182 1,524,645,888 1,524,645,888 0 0
49 1,324,042,333,129 1,558,249,472 1,558,249,472 0 0
50 1,329,725,951,353 1,560,645,632 1,560,645,632 0 0
51 1,331,703,106,458 1,594,249,216 1,594,249,216 0 0
52 1,337,153,898,984 1,558,249,472 1,558,249,472 0 0
53 1,339,449,398,245 1,599,049,728 1,599,049,728 0 0
54 1,344,092,800,331 1,632,976,896 1,632,976,896 0 0
100.00% (1,632,976,896B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->94.86% (1,548,992,512B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->92.78% (1,515,024,384B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->48.29% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->48.29% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->48.29% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->48.29% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->38.71% (632,102,912B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->38.71% (632,102,912B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->38.71% (632,102,912B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->38.71% (632,102,912B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->38.71% (632,102,912B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->05.78% (94,392,320B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->05.78% (94,392,320B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->05.78% (94,392,320B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| |
| ->02.08% (33,927,168B) 0x47BA67: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->02.08% (33,927,168B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | | ->02.08% (33,927,168B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | | ->02.08% (33,927,168B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | | ->02.08% (33,927,168B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | | ->02.08% (33,927,168B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->00.00% (0B) in 1+ places, all below ms_print's threshold (01.00%)
| |
| ->00.00% (40,960B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.56% (74,399,744B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.56% (74,399,744B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.56% (74,399,744B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.56% (74,399,744B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.56% (74,399,744B) 0x405D58: main (Sort.cpp:217)
|
->00.59% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
55 1,345,671,916,625 1,599,049,728 1,599,049,728 0 0
56 1,354,193,926,254 1,636,167,680 1,636,167,680 0 0
57 1,355,932,132,584 1,599,049,728 1,599,049,728 0 0
58 1,393,353,706,902 1,560,649,728 1,560,649,728 0 0
59 1,482,890,739,599 1,558,253,568 1,558,253,568 0 0
60 1,490,607,495,399 1,558,253,568 1,558,253,568 0 0
61 1,494,232,413,768 1,596,653,568 1,596,653,568 0 0
62 1,499,038,139,996 1,631,600,640 1,631,600,640 0 0
63 1,500,662,635,753 1,596,653,568 1,596,653,568 0 0
64 1,509,075,564,453 1,631,600,640 1,631,600,640 0 0
100.00% (1,631,600,640B) (page allocation syscalls) mmap/mremap/brk, --alloc-fns, etc.
->95.00% (1,550,016,512B) 0x4A3E19: mmap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debu\
g.sort-bed)
| ->92.86% (1,515,024,384B) 0x47B733: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed\
/bin/debug.sort-bed)
| | ->48.33% (788,529,152B) 0x47BBB9: calloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/\
debug.sort-bed)
| | | ->48.33% (788,529,152B) 0x400F5C: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double)\
(SortDetails.cpp:342)
| | | ->48.33% (788,529,152B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.\
cpp:836)
| | | ->48.33% (788,529,152B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->38.74% (632,102,912B) 0x47D018: _int_realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-be\
d/bin/debug.sort-bed)
| | | ->38.74% (632,102,912B) 0x47D32E: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/b\
in/debug.sort-bed)
| | | ->38.74% (632,102,912B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, doubl\
e) (SortDetails.cpp:313)
| | | ->38.74% (632,102,912B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetail\
s.cpp:836)
| | | ->38.74% (632,102,912B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->05.79% (94,392,320B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | ->05.79% (94,392,320B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->05.79% (94,392,320B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | ->05.79% (94,392,320B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | ->05.79% (94,392,320B) 0x405D58: main (Sort.cpp:217)
| |
| ->02.14% (34,947,072B) 0x47BA67: _int_malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | ->02.14% (34,947,072B) 0x47BEFC: malloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/d\
ebug.sort-bed)
| | | ->02.14% (34,947,072B) 0x463400: qsort_r (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bi\
n/debug.sort-bed)
| | | ->02.14% (34,947,072B) 0x403F3D: lexSortBedData(BedData*) (SortDetails.cpp:1176)
| | | ->02.14% (34,947,072B) 0x403343: processData(char const**, unsigned int, double, char*) (SortDetails\
.cpp:971)
| | | ->02.14% (34,947,072B) 0x405D58: main (Sort.cpp:217)
| | |
| | ->00.00% (0B) in 1+ places, all below ms_print's threshold (01.00%)
| |
| ->00.00% (45,056B) in 1+ places, all below ms_print's threshold (01.00%)
|
->04.41% (71,999,488B) 0x4A5039: mremap (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/debug\
.sort-bed)
| ->04.41% (71,999,488B) 0x47D47F: realloc (in /home/sjn/Github/BEDOPS/bedops/applications/bed/sort-bed/bin/de\
bug.sort-bed)
| ->04.41% (71,999,488B) 0x400DCF: appendChromBedEntry(ChromBedData*, long, long, char*, double*, double) (S\
ortDetails.cpp:313)
| ->04.41% (71,999,488B) 0x40299D: processData(char const**, unsigned int, double, char*) (SortDetails.cpp\
:836)
| ->04.41% (71,999,488B) 0x405D58: main (Sort.cpp:217)
|
->00.59% (9,584,640B) in 1+ places, all below ms_print's threshold (01.00%)
--------------------------------------------------------------------------------
n time(i) total(B) useful-heap(B) extra-heap(B) stacks(B)
--------------------------------------------------------------------------------
65 1,510,695,607,831 1,596,653,568 1,596,653,568 0 0
66 1,548,343,223,300 1,560,653,824 1,560,653,824 0 0
67 1,549,499,206,065 1,524,654,080 1,524,654,080 0 0
68 1,615,358,465,762 1,524,658,176 1,524,658,176 0 0
69 1,651,992,846,365 1,524,662,272 1,524,662,272 0 0
70 2,653,495,716,062 1,524,658,176 1,524,658,176 0 0
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