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alienzj/bioawk_check_len_seq_qual_fastq.sh

Last active April 25, 2024 06:01
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Check the length of seq and qual in FASTQ file
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bioawk_check_len_seq_qual_fastq.sh
bioawk -c fastx \
'{print $name "\t" length($seq) "\t" length($qual)}' <path/to/fastq.gz> | \
awk '$2!=$3{print}'
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