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pigz -d -c in.fastq.gz |
    | awk 'BEGIN {LN=0; } { if (LN == 1 || LN == 3) { print substr($0, 0, 26) } else { print $0 } ; if (LN == 3) { LN = 0 } else { LN++ } }' \
    | pigz -c - > out.fastq.gz

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# This function sorts the matrix for better visualization of mutual exclusivity across genes
memoSort <- function(M) {
	geneOrder <- sort(rowSums(M), decreasing=TRUE, index.return=TRUE)$ix;
	scoreCol <- function(x) {
		score <- 0;
		for(i in 1:length(x)) {
			if(x[i]) {
				score <- score + 2^(length(x)-i);
			}
		}

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#!/usr/bin/env python3

import json
import sys


def merge(inputs):
    """ Merges the data in the given input handles and returns the result """
    assert len(inputs) > 1
    record_ids = set()

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Source: https://confluence.rcs.griffith.edu.au/display/v20zCluster/Sun+Grid+Engine+SGE+state+letter+symbol+codes+meanings

Category	State	SGE Letter Code
Pending	pending	qw
Pending	pending, user hold	qw
Pending	pending, system hold	hqw
Pending	pending, user and system hold	hqw
Pending	pending, user hold, re-queue	hRwq
Pending	pending, system hold, re-queue	hRwq

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#!/usr/bin/env python3
"""
Running this script is (intended to be) equivalent to running the following Snakefile:

include: "pipeline.conf"  # Should be an empty file

shell.prefix("set -euo pipefail;")

rule all:
    input:

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require 'sinatra'

get '/hi' do
  "Hello World!"
end

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A Brief Tour of the Makepkg Process: What Makes a Pacman Package

Introduction

This is a terse document covering the anatomy of a package built for the pacman package manager.

The following example commands can mostly run verbatim to manually create a

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Hi:

perl -e 'print "hello world!\n"'

A simple filter:

perl -ne 'print if /REGEX/'

Filter out blank lines (in place):

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Useful Spacemacs commands

• SPC q q - quit
• SPC w / - split window vertically
• SPC w - - split window horizontally
• SPC 1 - switch to window 1
• SPC 2 - switch to window 2
• SPC w c - delete current window
• SPC TAB - switch to previous buffer
• SPC b b - switch buffers

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#pragma once

#include <boost/noncopyable.hpp>

#include <boost/beast/websocket.hpp>

#include <boost/beast/websocket/ssl.hpp>

struct websocket_stream : boost::noncopyable