plot relion euler angle distribution on stereonet

relion_star_orientation_distribution.py

#!/usr/bin/env python
import click
import starfile
import matplotlib.pyplot as plt
import mplstereonet

@click.command()
@click.option('--star_file', '-s', prompt='Input STAR file', type=click.Path(exists=True))
def star_orientation_distribution(star_file):
    star = starfile.read(star_file)
    theta = star['rlnAngleRot']
    r = star['rlnAngleTilt']
    fig = plt.figure(figsize=(8,8))
    ax = fig.add_subplot(111, projection='stereonet')
    ax.density_contourf(theta, r, measurement='poles', cmap='Blues', gridsize=100, sigma=5)
    ax.grid()
    ax.set(azimuth_ticklabels=[])
    output_filename = str(star_file).replace('.star', '_orientation_distribution.svg')
    fig.savefig(output_filename, transparent=True)
    return

if __name__ == '__main__':
    star_orientation_distribution()

I'm not sure exactly, which is why I removed them I just know that ax.density_contourf seemed to either change the ticklabels or rescale/shift the data somehow because the ticklabels didn't match my original data ranges - I'd love to know the answer if you end up looking into it!