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allenday/get open-cannabis project as CSV.bash

Created January 31, 2017 01:06
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get open-cannabis project as CSV.bash
wget -O - -q 'http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?save=efetch&rettype=runinfo&db=sra&term=PRJNA347566' | head -3
Run,ReleaseDate,LoadDate,spots,bases,spots_with_mates,avgLength,size_MB,AssemblyName,download_path,Experiment,LibraryName,LibraryStrategy,LibrarySelection,LibrarySource,LibraryLayout,InsertSize,InsertDev,Platform,Model,SRAStudy,BioProject,Study_Pubmed_id,ProjectID,Sample,BioSample,SampleType,TaxID,ScientificName,SampleName,g1k_pop_code,source,g1k_analysis_group,Subject_ID,Sex,Disease,Tumor,Affection_Status,Analyte_Type,Histological_Type,Body_Site,CenterName,Submission,dbgap_study_accession,Consent,RunHash,ReadHash
SRR4451123,2016-10-26,2016-10-26,1335786,201703669,1335786,150,67,,https://sra-download.ncbi.nlm.nih.gov/srapub/SRR4451123,SRX2269170,c6b9959a2057-TSCA,AMPLICON,PCR,GENOMIC,PAIRED,0,0,ILLUMINA,NextSeq 500,SRP092005,PRJNA347566,,347566,SRS1760286,SAMN05937632,simple,3483,Cannabis sativa,c6b9959a2057-TSCA_XXX,,,,,,,no,,,,,,SRA486992,,public,FEBDF4A4FCD9FA47F7BD6F3D50B2D02B,EE2D9236794875BC675B763345D3E7BC
SRR4451124,2016-10-26,2016-10-26,3685466,555574509,3685466,150,189,,https://sra-download.ncbi.nlm.nih.gov/srapub/SRR4451124,SRX2269171,a52279bac057-TSCA,AMPLICON,PCR,GENOMIC,PAIRED,0,0,ILLUMINA,NextSeq 500,SRP092005,PRJNA347566,,347566,SRS1760287,SAMN05937560,simple,3483,Cannabis sativa,a52279bac057-TSCA_Green_Corn,,,,,,,no,,,,,,SRA486992,,public,5C7355C3884EDF7A3EDF001528BAA04C,D445BE12CADD2CF8C9E2714710CE4C30
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