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PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t | |
# Failed test 'use PCAP::SRA;' | |
# at t/1_pm_compile.t line 35. | |
# Tried to use 'PCAP::SRA'. | |
# Error: Can't locate Data/UUID.pm in @INC (@INC contains: /opt/PCAP-core/PCAP-core-0.1.2/blib/lib /opt/PCAP-core/PCAP-core-0.1.2/blib/arch /opt/ICGC/lib/perl5/ | |
x86_64-linux-gnu-thread-multi /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /opt/ICGC/lib/perl5 /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /opt/ICGC/lib/p | |
erl5 /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/per | |
l/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at /opt/PCAP-core/PCAP-core-0.1.2/blib/lib/PCAP/SRA.pm line 36. | |
# BEGIN failed--compilation aborted at /opt/PCAP-core/PCAP-core-0.1.2/blib/lib/PCAP/SRA.pm line 36. | |
# Compilation failed in require at (eval 472) line 2. | |
# BEGIN failed--compilation aborted at (eval 472) line 2. | |
Bailout called. Further testing stopped: Unable to 'use' module PCAP::SRA | |
# Tests were run but no plan was declared and done_testing() was not seen. | |
FAILED--Further testing stopped: Unable to 'use' module PCAP::SRA | |
make: *** [test_dynamic] Error 255 |
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PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t | |
t/1_pm_compile.t ...... ok | |
t/2_pl_compile.t ...... ok | |
# Failed test 'Expect version 0.0.125 for bamcollate2' | |
# at t/3_external_progs.t line 51. | |
# Failed test 'Expect version 0.0.125 for bammarkduplicates' | |
# at t/3_external_progs.t line 51. | |
# Failed test 'Expect version 0.0.125 for bamsort' | |
# at t/3_external_progs.t line 51. | |
# Failed test 'Expect version 0.6.2|0.7.7 for bwa' | |
# at t/3_external_progs.t line 51. | |
# Looks like you failed 4 tests of 4. | |
# Failed test 'External programs have expected version' | |
# at t/3_external_progs.t line 53. | |
# Looks like you failed 1 test of 2. | |
t/3_external_progs.t .. | |
Dubious, test returned 1 (wstat 256, 0x100) | |
Failed 1/2 subtests | |
t/pcap.t .............. ok | |
t/pcapBam.t ........... ok | |
Use of uninitialized value $bwa in system at /opt/PCAP-core/blib/lib/PCAP/Bwa.pm line 48. | |
# Child (Non object checks) exited without calling finalize() | |
# Failed test 'Non object checks' | |
# at /usr/share/perl/5.14/Test/Builder.pm line 252. | |
# Tests were run but no plan was declared and done_testing() was not seen. | |
# Failed test 'Version returned for BWA' | |
# at t/pcapBwa.t line 15. | |
# Looks like you failed 1 test of 1. | |
# Failed test 'Non object checks' | |
# at t/pcapBwa.t line 16. | |
# Looks like you failed 1 test of 2. | |
t/pcapBwa.t ........... | |
Dubious, test returned 1 (wstat 256, 0x100) | |
Failed 1/2 subtests | |
t/pcapBwaMeta.t ....... ok | |
Use of uninitialized value $this in pattern match (m//) at t/pcapCli.t line 54. | |
# Failed test 'Fail when provided an existing write protected dir.' | |
# at t/pcapCli.t line 54. | |
# undef | |
# doesn't match '(?^:Option '.+' points to an existing WRITE PROTECTED directory: )' | |
Use of uninitialized value $this in pattern match (m//) at t/pcapCli.t line 58. | |
# Failed test 'Fails when unable to create directory (parent protected)' | |
# at t/pcapCli.t line 58. | |
# undef | |
# doesn't match '(?^:Permission denied)' | |
# Looks like you failed 2 tests of 7. | |
# Failed test 'out_dir_check' | |
# at t/pcapCli.t line 67. | |
# Looks like you failed 1 test of 3. | |
t/pcapCli.t ........... | |
Dubious, test returned 1 (wstat 256, 0x100) | |
Failed 1/3 subtests | |
t/pcapSra.t ........... ok | |
t/pcapThreaded.t ...... ok | |
Test Summary Report | |
------------------- | |
t/3_external_progs.t (Wstat: 256 Tests: 2 Failed: 1) | |
Failed test: 2 | |
Non-zero exit status: 1 | |
t/pcapBwa.t (Wstat: 256 Tests: 3 Failed: 2) | |
Failed tests: 2, 2 | |
Non-zero exit status: 1 | |
Parse errors: Tests out of sequence. Found (2) but expected (3) | |
Bad plan. You planned 2 tests but ran 3. | |
t/pcapCli.t (Wstat: 256 Tests: 3 Failed: 1) | |
Failed test: 3 | |
Non-zero exit status: 1 | |
Files=10, Tests=44, 5 wallclock secs ( 0.06 usr 0.05 sys + 3.02 cusr 0.51 csys = 3.64 CPU) | |
Result: FAIL | |
Failed 3/10 test programs. 4/44 subtests failed. | |
make: *** [test_dynamic] Error 255 |
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