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@allisonheath
Last active August 29, 2015 13:57
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PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-e" "test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
# Failed test 'use PCAP::SRA;'
# at t/1_pm_compile.t line 35.
# Tried to use 'PCAP::SRA'.
# Error: Can't locate Data/UUID.pm in @INC (@INC contains: /opt/PCAP-core/PCAP-core-0.1.2/blib/lib /opt/PCAP-core/PCAP-core-0.1.2/blib/arch /opt/ICGC/lib/perl5/
x86_64-linux-gnu-thread-multi /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /opt/ICGC/lib/perl5 /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /opt/ICGC/lib/p
erl5 /opt/ICGC/lib/perl5/x86_64-linux-gnu-thread-multi /etc/perl /usr/local/lib/perl/5.14.2 /usr/local/share/perl/5.14.2 /usr/lib/perl5 /usr/share/perl5 /usr/lib/per
l/5.14 /usr/share/perl/5.14 /usr/local/lib/site_perl .) at /opt/PCAP-core/PCAP-core-0.1.2/blib/lib/PCAP/SRA.pm line 36.
# BEGIN failed--compilation aborted at /opt/PCAP-core/PCAP-core-0.1.2/blib/lib/PCAP/SRA.pm line 36.
# Compilation failed in require at (eval 472) line 2.
# BEGIN failed--compilation aborted at (eval 472) line 2.
Bailout called. Further testing stopped: Unable to 'use' module PCAP::SRA
# Tests were run but no plan was declared and done_testing() was not seen.
FAILED--Further testing stopped: Unable to 'use' module PCAP::SRA
make: *** [test_dynamic] Error 255
PERL_DL_NONLAZY=1 /usr/bin/perl "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(0, 'blib/lib', 'blib/arch')" t/*.t
t/1_pm_compile.t ...... ok
t/2_pl_compile.t ...... ok
# Failed test 'Expect version 0.0.125 for bamcollate2'
# at t/3_external_progs.t line 51.
# Failed test 'Expect version 0.0.125 for bammarkduplicates'
# at t/3_external_progs.t line 51.
# Failed test 'Expect version 0.0.125 for bamsort'
# at t/3_external_progs.t line 51.
# Failed test 'Expect version 0.6.2|0.7.7 for bwa'
# at t/3_external_progs.t line 51.
# Looks like you failed 4 tests of 4.
# Failed test 'External programs have expected version'
# at t/3_external_progs.t line 53.
# Looks like you failed 1 test of 2.
t/3_external_progs.t ..
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/2 subtests
t/pcap.t .............. ok
t/pcapBam.t ........... ok
Use of uninitialized value $bwa in system at /opt/PCAP-core/blib/lib/PCAP/Bwa.pm line 48.
# Child (Non object checks) exited without calling finalize()
# Failed test 'Non object checks'
# at /usr/share/perl/5.14/Test/Builder.pm line 252.
# Tests were run but no plan was declared and done_testing() was not seen.
# Failed test 'Version returned for BWA'
# at t/pcapBwa.t line 15.
# Looks like you failed 1 test of 1.
# Failed test 'Non object checks'
# at t/pcapBwa.t line 16.
# Looks like you failed 1 test of 2.
t/pcapBwa.t ...........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/2 subtests
t/pcapBwaMeta.t ....... ok
Use of uninitialized value $this in pattern match (m//) at t/pcapCli.t line 54.
# Failed test 'Fail when provided an existing write protected dir.'
# at t/pcapCli.t line 54.
# undef
# doesn't match '(?^:Option '.+' points to an existing WRITE PROTECTED directory: )'
Use of uninitialized value $this in pattern match (m//) at t/pcapCli.t line 58.
# Failed test 'Fails when unable to create directory (parent protected)'
# at t/pcapCli.t line 58.
# undef
# doesn't match '(?^:Permission denied)'
# Looks like you failed 2 tests of 7.
# Failed test 'out_dir_check'
# at t/pcapCli.t line 67.
# Looks like you failed 1 test of 3.
t/pcapCli.t ...........
Dubious, test returned 1 (wstat 256, 0x100)
Failed 1/3 subtests
t/pcapSra.t ........... ok
t/pcapThreaded.t ...... ok
Test Summary Report
-------------------
t/3_external_progs.t (Wstat: 256 Tests: 2 Failed: 1)
Failed test: 2
Non-zero exit status: 1
t/pcapBwa.t (Wstat: 256 Tests: 3 Failed: 2)
Failed tests: 2, 2
Non-zero exit status: 1
Parse errors: Tests out of sequence. Found (2) but expected (3)
Bad plan. You planned 2 tests but ran 3.
t/pcapCli.t (Wstat: 256 Tests: 3 Failed: 1)
Failed test: 3
Non-zero exit status: 1
Files=10, Tests=44, 5 wallclock secs ( 0.06 usr 0.05 sys + 3.02 cusr 0.51 csys = 3.64 CPU)
Result: FAIL
Failed 3/10 test programs. 4/44 subtests failed.
make: *** [test_dynamic] Error 255
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