almasaeed2010

<?php
if ($argc <= 1) {
    echo "Please supply a file name\n";
    exit(1);
}

$input = $argv[1];
$file = fopen($input, 'r');

while ($line = fgets($file)) {

almasaeed2010

import sys

if len(sys.argv) < 2:
    print ('Please provide a file name')
    exit(1)

files = sys.argv[1:]
matrix = {}
biomaterials = {}
genes = {}

almasaeed2010

#!/data/apps/python/3.2.1/bin/python
import re
import sys
import getopt
import heapq
import xml.etree.ElementTree as ET
from pprint import pprint

input_xml = sys.argv

almasaeed2010

<?php
/**
 * Add a fasta line to a file
 *
 * @param $FILE file handle
 * @param $uniquename the unique identifier
 * @param $data any data on the first line after the unique identifier
 * @param $sequence the sequence to print under the first line
 */
function fputfasta($FILE, $uniquename, $data, $sequence) {

almasaeed2010

CREATE TABLE IF NOT EXISTS `continents` (
  `code` CHAR(2) NOT NULL COMMENT 'Continent code',
  `name` VARCHAR(255),
  PRIMARY KEY (`code`)
) ENGINE=InnoDB;

INSERT INTO `continents` VALUES
  ('AF', 'Africa'),
  ('AS', 'Asia'),
  ('EU', 'Europe'),