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alxndrkalinin/CountNucleoli

Last active August 29, 2015 14:22
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Count nucleoli in the directory with nuclei
Raw
CountNucleoli
for i in $(ls | egrep '*g000_mask-[[:digit:]]{3}\.nii.gz'); do
m=${i%.nii.gz};
echo $m;
mm="$m-nucleoli-[[:digit:]]{4,10}\.nii.gz$";
nn=$(ls | egrep $mm | wc -l);
echo $nn;
done
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