collectOffFiles

collectOffFiles.sh

#!/bin/bash

lines=1
while read -r line; do
	loniresults="/Users/alex/Projects/AtheyLab/LONI_Results/ShapeTranslator_2.ShapeOutputDirectory-"
	printf -v idx "%02d" $lines
	currdir=$loniresults$idx
	filename="/182_QEM_SubDiv.off"
	target=$currdir$filename
	destdir=${1%_c0.lst}
	destdir=${destdir##*0}
	newfilename=${line%.nii*}
	newfilename="/$newfilename.off"
	dest=$destdir$newfilename
	cp $target $dest

	((lines++))
done < $1