MySQL 5.5 => 5.6 errors

gistfile1.txt

140611 19:28:29 mysqld_safe Starting mysqld daemon with databases from /var/lib/mysql
2014-06-11 19:28:30 0 [Warning] Using unique option prefix key_buffer instead of key_buffer_size is deprecated and will be removed in a future release. Please use the full name instead.
2014-06-11 19:28:30 0 [Warning] The syntax 'pre-4.1 password hash' is deprecated and will be removed in a future release. Please use post-4.1 password hash instead.
2014-06-11 19:28:30 0 [Warning] TIMESTAMP with implicit DEFAULT value is deprecated. Please use --explicit_defaults_for_timestamp server option (see documentation for more details).
2014-06-11 19:28:30 20854 [Note] Plugin 'FEDERATED' is disabled.
2014-06-11 19:28:30 20854 [Note] InnoDB: Started in read only mode
2014-06-11 19:28:30 20854 [Note] InnoDB: Using atomics to ref count buffer pool pages
2014-06-11 19:28:30 20854 [Note] InnoDB: The InnoDB memory heap is disabled
2014-06-11 19:28:30 20854 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
2014-06-11 19:28:30 20854 [Note] InnoDB: Compressed tables use zlib 1.2.3
2014-06-11 19:28:30 20854 [Note] InnoDB: Using Linux native AIO
2014-06-11 19:28:30 20854 [Note] InnoDB: Using CPU crc32 instructions
2014-06-11 19:28:30 20854 [Note] InnoDB: Disabling background IO write threads.
2014-06-11 19:28:30 20854 [Note] InnoDB: Initializing buffer pool, size = 128.0M
2014-06-11 19:28:30 20854 [Note] InnoDB: Completed initialization of buffer pool
2014-06-11 19:28:30 20854 [Note] InnoDB: Highest supported file format is Barracuda.
2014-06-11 19:28:30 20854 [Note] InnoDB: The log sequence numbers 0 and 0 in ibdata files do not match the log sequence number 11519321229 in the ib_logfiles!
2014-06-11 19:28:30 20854 [ERROR] InnoDB: Can't initiate database recovery, running in read-only-mode.
2014-06-11 19:28:30 20854 [ERROR] Plugin 'InnoDB' init function returned error.
2014-06-11 19:28:30 20854 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2014-06-11 19:28:30 20854 [ERROR] Unknown/unsupported storage engine: InnoDB
2014-06-11 19:28:30 20854 [ERROR] Aborting

2014-06-11 19:28:30 20854 [Note] Binlog end
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'partition'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'BLACKHOLE'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_DELETED'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_METRICS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMPMEM'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMP_RESET'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_CMP'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_LOCKS'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'INNODB_TRX'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'ARCHIVE'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'MyISAM'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'MRG_MYISAM'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'CSV'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'MEMORY'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'sha256_password'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'mysql_old_password'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'mysql_native_password'
2014-06-11 19:28:30 20854 [Note] Shutting down plugin 'binlog'
2014-06-11 19:28:30 20854 [Note] /usr/sbin/mysqld: Shutdown complete