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April 12, 2021 21:09
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diff between proposed openapi spec and the current spec on develop
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| 4c4 | |
| < "title": "azul-service-amar", | |
| --- | |
| > "title": "azul-service-dev", | |
| 93c93 | |
| < "description": "\nThe checked resources\nare healthy.\n\nThe response consists of the following keys:\n\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`true`.\n\n\nAll of the nested `up` keys\nare `true`.\n", | |
| --- | |
| > "description": "\nThe checked resources\nare healthy.\n\nThe response consists of the following keys:\n\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`true`.\n\n\nAll of the nested `up` keys\nare `true`.\n", | |
| 126,128d125 | |
| < "api_endpoints": {}, | |
| < "other_lambdas": {}, | |
| < "progress": {}, | |
| 130a128,130 | |
| > "api_endpoints": {}, | |
| > "progress": {}, | |
| > "other_lambdas": {}, | |
| 137c137 | |
| < "description": "\nAt least one of the checked resources\nis not healthy.\n\nThe response consists of the following keys:\n\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`false`.\n\n\nAt least one of the nested `up` keys\nis `false`.\n", | |
| --- | |
| > "description": "\nAt least one of the checked resources\nis not healthy.\n\nThe response consists of the following keys:\n\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`false`.\n\n\nAt least one of the nested `up` keys\nis `false`.\n", | |
| 170,172d169 | |
| < "api_endpoints": {}, | |
| < "other_lambdas": {}, | |
| < "progress": {}, | |
| 174a172,174 | |
| > "api_endpoints": {}, | |
| > "progress": {}, | |
| > "other_lambdas": {}, | |
| 488c488 | |
| < "description": "\nThe checked resources\nare healthy.\n\nThe response consists of the following keys:\n\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`true`.\n\n\nAll of the nested `up` keys\nare `true`.\n", | |
| --- | |
| > "description": "\nThe checked resources\nare healthy.\n\nThe response consists of the following keys:\n\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`true`.\n\n\nAll of the nested `up` keys\nare `true`.\n", | |
| 521,523d520 | |
| < "api_endpoints": {}, | |
| < "other_lambdas": {}, | |
| < "progress": {}, | |
| 525a523,525 | |
| > "api_endpoints": {}, | |
| > "progress": {}, | |
| > "other_lambdas": {}, | |
| 532c532 | |
| < "description": "\nAt least one of the checked resources\nis not healthy.\n\nThe response consists of the following keys:\n\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`false`.\n\n\nAt least one of the nested `up` keys\nis `false`.\n", | |
| --- | |
| > "description": "\nAt least one of the checked resources\nis not healthy.\n\nThe response consists of the following keys:\n\n* `elasticsearch` \nIndicates whether the Elasticsearch cluster is responsive.\n* `queues` \nReturns information about the SQS queues used by the indexer.\n* `api_endpoints` \nIndicates whether important service API endpoints are operational.\n* `progress` \nThe number of Data Store bundles pending to be indexed and the number\nof index documents in need of updating.\n* `other_lambdas` \nIndicates whether the companion REST API responds to HTTP requests.\n* `up` \nindicates the overall result of the health check\n\n\nThe top-level `up` key of the response is\n`false`.\n\n\nAt least one of the nested `up` keys\nis `false`.\n", | |
| 565,567d564 | |
| < "api_endpoints": {}, | |
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| < "progress": {}, | |
| 569a567,569 | |
| > "api_endpoints": {}, | |
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| > }, | |
| 1452c1302 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 1454,1460c1304,1305 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 1463,1464c1308 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1471,1477c1315,1316 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 1480,1481c1319 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1485a1324,1338 | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "donorCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| 1501,1507c1354,1355 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 1510,1516c1358,1359 | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeUnit": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1520c1363 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 1522c1365,1367 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1524,1533c1369,1370 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1537c1374 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 1539c1376,1378 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1541,1545c1380 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1549c1384 | |
| < "pairedEnd": { | |
| --- | |
| > "donorDisease": { | |
| 1563,1567c1398 | |
| < } | |
| < ] | |
| < }, | |
| < "preservationMethod": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 1571c1402 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 1573c1404,1406 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1575,1584c1408,1409 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "project": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1588c1413 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 1590c1415,1417 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1592,1601c1419,1420 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectDescription": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1605c1424 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 1607c1426,1428 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1609,1613c1430 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1617c1434 | |
| < "projectId": { | |
| --- | |
| > "effectiveOrgan": { | |
| 1631,1635c1448 | |
| < } | |
| < ] | |
| < }, | |
| < "projectTitle": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 1639c1452 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 1641c1454,1456 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1643,1652c1458,1459 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "publicationTitle": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1656c1463 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 1658c1465,1467 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1660,1669c1469,1470 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1673c1474 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 1675c1476,1478 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1677,1681c1480 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1685c1484 | |
| < "sampleEntityType": { | |
| --- | |
| > "entryId": { | |
| 1699,1703c1498 | |
| < } | |
| < ] | |
| < }, | |
| < "sampleId": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 1707c1502 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 1709c1504,1506 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1711,1720c1508,1509 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "selectedCellType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1724c1513 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 1726c1515,1517 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1728,1737c1519,1520 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "specimenDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 1741c1524 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 1743c1526,1528 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1745,1749c1530 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 1753c1534 | |
| < "specimenOrgan": { | |
| --- | |
| > "fileFormat": { | |
| 1767,1771c1548 | |
| < } | |
| < ] | |
| < }, | |
| < "specimenOrganPart": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 1775c1552 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 1777c1554,1556 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1779,1783c1558,1580 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 1787c1584 | |
| < "workflow": { | |
| --- | |
| > "fileId": { | |
| 1801,1989c1598 | |
| < } | |
| < ] | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| < ] | |
| < } | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < }, | |
| < "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| < }, | |
| < { | |
| < "name": "size", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "integer", | |
| < "format": "int64", | |
| < "minimum": 1, | |
| < "maximum": 1000, | |
| < "default": 10 | |
| < }, | |
| < "description": "The number of hits included per page." | |
| < }, | |
| < { | |
| < "name": "sort", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "arrayExpressAccessions", | |
| < "assayType", | |
| < "biologicalSex", | |
| < "bundleUuid", | |
| < "bundleVersion", | |
| < "cellCount", | |
| < "cellLineType", | |
| < "contactName", | |
| < "developmentStage", | |
| < "donorCount", | |
| < "donorDisease", | |
| < "effectiveOrgan", | |
| < "entryId", | |
| < "fileFormat", | |
| < "fileId", | |
| < "fileName", | |
| < "fileSize", | |
| < "fileSource", | |
| < "fileVersion", | |
| < "genusSpecies", | |
| < "geoSeriesAccessions", | |
| < "insdcProjectAccessions", | |
| < "insdcStudyAccessions", | |
| < "institution", | |
| < "instrumentManufacturerModel", | |
| < "laboratory", | |
| < "libraryConstructionApproach", | |
| < "modelOrgan", | |
| < "modelOrganPart", | |
| < "nucleicAcidSource", | |
| < "organ", | |
| < "organPart", | |
| < "organismAge", | |
| < "organismAgeRange", | |
| < "organismAgeUnit", | |
| < "organismAgeValue", | |
| < "pairedEnd", | |
| < "preservationMethod", | |
| < "project", | |
| < "projectDescription", | |
| < "projectId", | |
| < "projectTitle", | |
| < "publicationTitle", | |
| < "sampleDisease", | |
| < "sampleEntityType", | |
| < "sampleId", | |
| < "selectedCellType", | |
| < "specimenDisease", | |
| < "specimenOrgan", | |
| < "specimenOrganPart", | |
| < "workflow" | |
| < ], | |
| < "default": "fileName" | |
| < }, | |
| < "description": "The facet to sort the hits by." | |
| < }, | |
| < { | |
| < "name": "order", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "asc", | |
| < "desc" | |
| < ], | |
| < "default": "asc" | |
| < }, | |
| < "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| < }, | |
| < { | |
| < "name": "search_before", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_before_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < } | |
| < ] | |
| < }, | |
| < "get": { | |
| < "summary": "Search the files index for entities of interest.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "filters", | |
| < "in": "query", | |
| < "required": false, | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "arrayExpressAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 1993c1602 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 1995c1604,1606 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 1997,2006c1608,1609 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "assayType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 2010c1613 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 2012c1615,1617 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2014,2023c1619,1620 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "biologicalSex": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 2027c1624 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 2029c1626,1628 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2031,2035c1630 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 2039c1634 | |
| < "bundleUuid": { | |
| --- | |
| > "fileName": { | |
| 2053,2057c1648 | |
| < } | |
| < ] | |
| < }, | |
| < "bundleVersion": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 2061c1652 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 2063c1654,1656 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2065,2074c1658,1659 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 2078c1663 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 2080c1665,1667 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2082,2091c1669,1670 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellLineType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 2095c1674 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 2097c1676,1678 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2099,2103c1680 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 2107c1684 | |
| < "contactName": { | |
| --- | |
| > "fileSize": { | |
| 2121,2125c1698 | |
| < } | |
| < ] | |
| < }, | |
| < "developmentStage": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 2129c1702 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 2131c1704,1706 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 2133,2142c1708,1709 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 2146c1713 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 2148c1715,1717 | |
| < "items": {} | |
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| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 2838c2434 | |
| < "specimenDisease": { | |
| --- | |
| > "organPart": { | |
| 2851a2448,2480 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 2855c2484 | |
| < "specimenOrgan": { | |
| --- | |
| > "organismAge": { | |
| 2869,2872c2498,2534 | |
| < } | |
| < ] | |
| < }, | |
| < "specimenOrganPart": { | |
| --- | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "organismAgeRange": { | |
| 2885a2548,2580 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 2889c2584 | |
| < "workflow": { | |
| --- | |
| > "organismAgeUnit": { | |
| 2902a2598,2630 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 2905,2914c2633,2681 | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| --- | |
| > }, | |
| > "organismAgeValue": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| 2916,3073c2683,2691 | |
| < } | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < }, | |
| < "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| < }, | |
| < { | |
| < "name": "size", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "integer", | |
| < "format": "int64", | |
| < "minimum": 1, | |
| < "maximum": 1000, | |
| < "default": 10 | |
| < }, | |
| < "description": "The number of hits included per page." | |
| < }, | |
| < { | |
| < "name": "sort", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "arrayExpressAccessions", | |
| < "assayType", | |
| < "biologicalSex", | |
| < "bundleUuid", | |
| < "bundleVersion", | |
| < "cellCount", | |
| < "cellLineType", | |
| < "contactName", | |
| < "developmentStage", | |
| < "donorCount", | |
| < "donorDisease", | |
| < "effectiveOrgan", | |
| < "entryId", | |
| < "fileFormat", | |
| < "fileId", | |
| < "fileName", | |
| < "fileSize", | |
| < "fileSource", | |
| < "fileVersion", | |
| < "genusSpecies", | |
| < "geoSeriesAccessions", | |
| < "insdcProjectAccessions", | |
| < "insdcStudyAccessions", | |
| < "institution", | |
| < "instrumentManufacturerModel", | |
| < "laboratory", | |
| < "libraryConstructionApproach", | |
| < "modelOrgan", | |
| < "modelOrganPart", | |
| < "nucleicAcidSource", | |
| < "organ", | |
| < "organPart", | |
| < "organismAge", | |
| < "organismAgeRange", | |
| < "organismAgeUnit", | |
| < "organismAgeValue", | |
| < "pairedEnd", | |
| < "preservationMethod", | |
| < "project", | |
| < "projectDescription", | |
| < "projectId", | |
| < "projectTitle", | |
| < "publicationTitle", | |
| < "sampleDisease", | |
| < "sampleEntityType", | |
| < "sampleId", | |
| < "selectedCellType", | |
| < "specimenDisease", | |
| < "specimenOrgan", | |
| < "specimenOrganPart", | |
| < "workflow" | |
| < ], | |
| < "default": "fileName" | |
| < }, | |
| < "description": "The facet to sort the hits by." | |
| < }, | |
| < { | |
| < "name": "order", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "asc", | |
| < "desc" | |
| < ], | |
| < "default": "asc" | |
| < }, | |
| < "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| < }, | |
| < { | |
| < "name": "search_before", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_before_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < } | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nPaginated list of files that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_files__file_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "hits": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": { | |
| < "protocols": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > }, | |
| > "pairedEnd": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 3076,3084c2694,2706 | |
| < "entryId": { | |
| < "type": "string" | |
| < }, | |
| < "samples": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3086,3092c2708,2717 | |
| < }, | |
| < "specimens": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3094,3100c2719,2728 | |
| < }, | |
| < "cellLines": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3102,3108c2730,2741 | |
| < }, | |
| < "donorOrganisms": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "preservationMethod": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 3111,3114c2744,2791 | |
| < "organoids": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "string" | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "project": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 3117,3122c2794,2806 | |
| < "cellSuspensions": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3126,3137c2810,2832 | |
| < "required": [ | |
| < "protocols", | |
| < "entryId", | |
| < "samples", | |
| < "specimens", | |
| < "cellLines", | |
| < "donorOrganisms", | |
| < "organoids", | |
| < "cellSuspensions" | |
| < ], | |
| < "additionalProperties": true | |
| < } | |
| --- | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| 3139,3323c2834 | |
| < "pagination": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < }, | |
| < "termFacets": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "required": [ | |
| < "hits", | |
| < "pagination", | |
| < "termFacets" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < }, | |
| < "/index/samples/{sample_id}": { | |
| < "get": { | |
| < "summary": "Detailed information on a particular sample entity.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "sample_id", | |
| < "in": "path", | |
| < "required": true, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "The UUID of the desired sample" | |
| < } | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nThis response describes a single sample entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_samples).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the sample's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "protocols": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "entryId": { | |
| < "type": "string" | |
| < }, | |
| < "samples": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "specimens": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "cellLines": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "donorOrganisms": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "organoids": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "string" | |
| < } | |
| < }, | |
| < "cellSuspensions": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < } | |
| < }, | |
| < "required": [ | |
| < "protocols", | |
| < "entryId", | |
| < "samples", | |
| < "specimens", | |
| < "cellLines", | |
| < "donorOrganisms", | |
| < "organoids", | |
| < "cellSuspensions" | |
| < ], | |
| < "additionalProperties": true | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < }, | |
| < "/index/samples": { | |
| < "head": { | |
| < "summary": "Perform a query without returning its result.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nThe HEAD method can be used to test whether the\nsamples index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_samples).\n" | |
| < } | |
| < }, | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "filters", | |
| < "in": "query", | |
| < "required": false, | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "arrayExpressAccessions": { | |
| --- | |
| > "projectDescription": { | |
| 3337,3341c2848 | |
| < } | |
| < ] | |
| < }, | |
| < "assayType": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3345c2852 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3347c2854,2856 | |
| < "items": {} | |
| --- | |
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| < }, | |
| < "required": [ | |
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| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "biologicalSex": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3362c2863 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3364c2865,2867 | |
| < "items": {} | |
| --- | |
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| 3366,3375c2869,2870 | |
| < }, | |
| < "required": [ | |
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| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "bundleUuid": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3379c2874 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3381c2876,2878 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3383,3387c2880 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3391c2884 | |
| < "bundleVersion": { | |
| --- | |
| > "projectId": { | |
| 3405,3409c2898 | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3413c2902 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3415c2904,2906 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
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| 3417,3426c2908,2909 | |
| < }, | |
| < "required": [ | |
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| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellLineType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3430c2913 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3432c2915,2917 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3434,3443c2919,2920 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "contactName": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3447c2924 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3449c2926,2928 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3451,3455c2930 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3459c2934 | |
| < "developmentStage": { | |
| --- | |
| > "projectTitle": { | |
| 3473,3477c2948 | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3481c2952 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3483c2954,2956 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3485,3494c2958,2959 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3498c2963 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3500c2965,2967 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3502,3511c2969,2970 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "effectiveOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3515c2974 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3517c2976,2978 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3519,3523c2980 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3527c2984 | |
| < "entryId": { | |
| --- | |
| > "publicationTitle": { | |
| 3541,3545c2998 | |
| < } | |
| < ] | |
| < }, | |
| < "fileFormat": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3549c3002 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3551c3004,3006 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3553,3562c3008,3009 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3566c3013 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3568c3015,3017 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3570,3579c3019,3020 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileName": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3583c3024 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3585c3026,3028 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3587,3591c3030 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3595c3034 | |
| < "fileSize": { | |
| --- | |
| > "sampleDisease": { | |
| 3609,3613c3048 | |
| < } | |
| < ] | |
| < }, | |
| < "fileSource": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3617c3052 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3619c3054,3056 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3621,3630c3058,3059 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileVersion": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3634c3063 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3636c3065,3067 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3638,3647c3069,3070 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "genusSpecies": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3651c3074 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3653c3076,3078 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3655,3659c3080 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3663c3084 | |
| < "geoSeriesAccessions": { | |
| --- | |
| > "sampleEntityType": { | |
| 3677,3681c3098 | |
| < } | |
| < ] | |
| < }, | |
| < "insdcProjectAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3685c3102 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3687c3104,3106 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3689,3693c3108,3130 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
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| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
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| > "maxItems": 2 | |
| > } | |
| > } | |
| 3697c3134 | |
| < "insdcStudyAccessions": { | |
| --- | |
| > "sampleId": { | |
| 3711,3715c3148 | |
| < } | |
| < ] | |
| < }, | |
| < "institution": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3719c3152 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3721c3154,3156 | |
| < "items": {} | |
| --- | |
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| 3723,3732c3158,3159 | |
| < }, | |
| < "required": [ | |
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| < } | |
| < ] | |
| < }, | |
| < "instrumentManufacturerModel": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3736c3163 | |
| < "is": { | |
| --- | |
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| < "items": {} | |
| --- | |
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| < }, | |
| < "required": [ | |
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| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "laboratory": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3753c3174 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
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| < "items": {} | |
| --- | |
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| < }, | |
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| < ], | |
| < "additionalProperties": false | |
| --- | |
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| 3765c3184 | |
| < "libraryConstructionApproach": { | |
| --- | |
| > "selectedCellType": { | |
| 3779,3783c3198 | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3787c3202 | |
| < "is": { | |
| --- | |
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| 3789c3204,3206 | |
| < "items": {} | |
| --- | |
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| 3791,3800c3208,3209 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrganPart": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3804c3213 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3806c3215,3217 | |
| < "items": {} | |
| --- | |
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| 3808,3817c3219,3220 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "nucleicAcidSource": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3821c3224 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 3823c3226,3228 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
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| 3825,3829c3230 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3833c3234 | |
| < "organ": { | |
| --- | |
| > "specimenDisease": { | |
| 3847,3851c3248 | |
| < } | |
| < ] | |
| < }, | |
| < "organPart": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3855c3252 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3857c3254,3256 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3859,3863c3258,3280 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
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| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 3867c3284 | |
| < "organismAge": { | |
| --- | |
| > "specimenOrgan": { | |
| 3881,3885c3298 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3889c3302 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 3891,3897c3304,3305 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 3900,3901c3308 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3908,3914c3315,3316 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 3917,3931c3319 | |
| < }, | |
| < "additionalProperties": false | |
| < }, | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3936c3324 | |
| < "contains": { | |
| --- | |
| > "intersects": { | |
| 3938,3944c3326,3327 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
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| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 3947,3948c3330 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 3952c3334 | |
| < "organismAgeUnit": { | |
| --- | |
| > "specimenOrganPart": { | |
| 3966,3970c3348 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 3974c3352 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 3976c3354,3356 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
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| 3978,3987c3358,3359 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "pairedEnd": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 3991c3363 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 3993c3365,3367 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 3995,4004c3369,3370 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
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| < } | |
| < ] | |
| < }, | |
| < "organ": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 4940c4056 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 4942c4058,4060 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 4944,4948c4062 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 4952c4066 | |
| < "organPart": { | |
| --- | |
| > "donorCount": { | |
| 4966,4970c4080 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAge": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 4974c4084 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 4976c4086,4088 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 4978,4987c4090,4091 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 4991c4095 | |
| < "intersects": { | |
| --- | |
| > "within": { | |
| 4993,4999c4097,4098 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 5002,5003c4101 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5008c4106 | |
| < "within": { | |
| --- | |
| > "intersects": { | |
| 5010,5016c4108,4109 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 5019,5021c4112,4117 | |
| < }, | |
| < "additionalProperties": false | |
| < }, | |
| --- | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "donorDisease": { | |
| > "oneOf": [ | |
| 5040,5046c4136,4137 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 5049,5055c4140,4141 | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeUnit": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5059c4145 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5061c4147,4149 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5063,5072c4151,4152 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5076c4156 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 5078c4158,4160 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5080,5084c4162 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5088c4166 | |
| < "pairedEnd": { | |
| --- | |
| > "effectiveOrgan": { | |
| 5102,5106c4180 | |
| < } | |
| < ] | |
| < }, | |
| < "preservationMethod": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5110c4184 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5112c4186,4188 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5114,5123c4190,4191 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "project": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5127c4195 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5129c4197,4199 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5131,5140c4201,4202 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectDescription": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5144c4206 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 5146c4208,4210 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5148,5152c4212 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5156c4216 | |
| < "projectId": { | |
| --- | |
| > "entryId": { | |
| 5170,5174c4230 | |
| < } | |
| < ] | |
| < }, | |
| < "projectTitle": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5178c4234 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5180c4236,4238 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5182,5191c4240,4241 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "publicationTitle": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5195c4245 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5197c4247,4249 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5199,5208c4251,4252 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5212c4256 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 5214c4258,4260 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5216,5220c4262 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5224c4266 | |
| < "sampleEntityType": { | |
| --- | |
| > "fileFormat": { | |
| 5238,5242c4280 | |
| < } | |
| < ] | |
| < }, | |
| < "sampleId": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5246c4284 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5248c4286,4288 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5250,5254c4290,4312 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5258c4316 | |
| < "selectedCellType": { | |
| --- | |
| > "fileId": { | |
| 5271a4330,4362 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5275c4366 | |
| < "specimenDisease": { | |
| --- | |
| > "fileName": { | |
| 5288a4380,4412 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5292c4416 | |
| < "specimenOrgan": { | |
| --- | |
| > "fileSize": { | |
| 5305a4430,4462 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5309c4466 | |
| < "specimenOrganPart": { | |
| --- | |
| > "fileSource": { | |
| 5323c4480,4513 | |
| < } | |
| --- | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| 5326c4516 | |
| < "workflow": { | |
| --- | |
| > "fileVersion": { | |
| 5339a4530,4562 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5342,5510c4565,4573 | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| < ] | |
| < } | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < }, | |
| < "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| < }, | |
| < { | |
| < "name": "size", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "integer", | |
| < "format": "int64", | |
| < "minimum": 1, | |
| < "maximum": 1000, | |
| < "default": 10 | |
| < }, | |
| < "description": "The number of hits included per page." | |
| < }, | |
| < { | |
| < "name": "sort", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "arrayExpressAccessions", | |
| < "assayType", | |
| < "biologicalSex", | |
| < "bundleUuid", | |
| < "bundleVersion", | |
| < "cellCount", | |
| < "cellLineType", | |
| < "contactName", | |
| < "developmentStage", | |
| < "donorCount", | |
| < "donorDisease", | |
| < "effectiveOrgan", | |
| < "entryId", | |
| < "fileFormat", | |
| < "fileId", | |
| < "fileName", | |
| < "fileSize", | |
| < "fileSource", | |
| < "fileVersion", | |
| < "genusSpecies", | |
| < "geoSeriesAccessions", | |
| < "insdcProjectAccessions", | |
| < "insdcStudyAccessions", | |
| < "institution", | |
| < "instrumentManufacturerModel", | |
| < "laboratory", | |
| < "libraryConstructionApproach", | |
| < "modelOrgan", | |
| < "modelOrganPart", | |
| < "nucleicAcidSource", | |
| < "organ", | |
| < "organPart", | |
| < "organismAge", | |
| < "organismAgeRange", | |
| < "organismAgeUnit", | |
| < "organismAgeValue", | |
| < "pairedEnd", | |
| < "preservationMethod", | |
| < "project", | |
| < "projectDescription", | |
| < "projectId", | |
| < "projectTitle", | |
| < "publicationTitle", | |
| < "sampleDisease", | |
| < "sampleEntityType", | |
| < "sampleId", | |
| < "selectedCellType", | |
| < "specimenDisease", | |
| < "specimenOrgan", | |
| < "specimenOrganPart", | |
| < "workflow" | |
| < ], | |
| < "default": "sampleId" | |
| < }, | |
| < "description": "The facet to sort the hits by." | |
| < }, | |
| < { | |
| < "name": "order", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "asc", | |
| < "desc" | |
| < ], | |
| < "default": "asc" | |
| < }, | |
| < "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| < }, | |
| < { | |
| < "name": "search_before", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_before_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < } | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nPaginated list of samples that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_samples__sample_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "hits": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": { | |
| < "protocols": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > }, | |
| > "genusSpecies": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 5513,5521c4576,4588 | |
| < "entryId": { | |
| < "type": "string" | |
| < }, | |
| < "samples": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5523,5529c4590,4599 | |
| < }, | |
| < "specimens": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5531,5537c4601,4610 | |
| < }, | |
| < "cellLines": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5539,5545c4612,4623 | |
| < }, | |
| < "donorOrganisms": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "geoSeriesAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 5548,5551c4626,4673 | |
| < "organoids": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "string" | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "insdcProjectAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| 5554,5559c4676,4688 | |
| < "cellSuspensions": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5563,5574c4692,4714 | |
| < "required": [ | |
| < "protocols", | |
| < "entryId", | |
| < "samples", | |
| < "specimens", | |
| < "cellLines", | |
| < "donorOrganisms", | |
| < "organoids", | |
| < "cellSuspensions" | |
| < ], | |
| < "additionalProperties": true | |
| < } | |
| --- | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| 5576,5579c4716,4764 | |
| < "pagination": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| --- | |
| > "insdcStudyAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| 5581,5760c4766 | |
| < "termFacets": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "required": [ | |
| < "hits", | |
| < "pagination", | |
| < "termFacets" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < }, | |
| < "/index/bundles/{bundle_id}": { | |
| < "get": { | |
| < "summary": "Detailed information on a particular bundle entity.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "bundle_id", | |
| < "in": "path", | |
| < "required": true, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "The UUID of the desired bundle" | |
| < } | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nThis response describes a single bundle entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_bundles).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the bundle's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "protocols": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "entryId": { | |
| < "type": "string" | |
| < }, | |
| < "samples": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "specimens": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "cellLines": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "donorOrganisms": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < }, | |
| < "organoids": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "string" | |
| < } | |
| < }, | |
| < "cellSuspensions": { | |
| < "type": "array", | |
| < "items": { | |
| < "type": "object", | |
| < "properties": {}, | |
| < "additionalProperties": true | |
| < } | |
| < } | |
| < }, | |
| < "required": [ | |
| < "protocols", | |
| < "entryId", | |
| < "samples", | |
| < "specimens", | |
| < "cellLines", | |
| < "donorOrganisms", | |
| < "organoids", | |
| < "cellSuspensions" | |
| < ], | |
| < "additionalProperties": true | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < } | |
| < }, | |
| < "/index/bundles": { | |
| < "head": { | |
| < "summary": "Perform a query without returning its result.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "responses": { | |
| < "200": { | |
| < "description": "\nThe HEAD method can be used to test whether the\nbundles index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_bundles).\n" | |
| < } | |
| < }, | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "filters", | |
| < "in": "query", | |
| < "required": false, | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "arrayExpressAccessions": { | |
| --- | |
| > "institution": { | |
| 5774,5778c4780 | |
| < } | |
| < ] | |
| < }, | |
| < "assayType": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5782c4784 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5784c4786,4788 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5786,5795c4790,4791 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "biologicalSex": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5799c4795 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5801c4797,4799 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5803,5812c4801,4802 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "bundleUuid": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5816c4806 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 5818c4808,4810 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5820,5824c4812 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5828c4816 | |
| < "bundleVersion": { | |
| --- | |
| > "instrumentManufacturerModel": { | |
| 5842,5846c4830 | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5850c4834 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5852c4836,4838 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5854,5863c4840,4841 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellLineType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5867c4845 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5869c4847,4849 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5871,5875c4851,4862 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 5879c4866 | |
| < "contactName": { | |
| --- | |
| > "laboratory": { | |
| 5893,5897c4880 | |
| < } | |
| < ] | |
| < }, | |
| < "developmentStage": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5901c4884 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5903c4886,4888 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5905,5914c4890,4891 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5918c4895 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5920c4897,4899 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5922,5931c4901,4902 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5935c4906 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 5937c4908,4910 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5939,5943c4912 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 5947c4916 | |
| < "effectiveOrgan": { | |
| --- | |
| > "libraryConstructionApproach": { | |
| 5961,5965c4930 | |
| < } | |
| < ] | |
| < }, | |
| < "entryId": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 5969c4934 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 5971c4936,4938 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5973,5982c4940,4941 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileFormat": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 5986c4945 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 5988c4947,4949 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 5990,5999c4951,4952 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6003c4956 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6005c4958,4960 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6007,6011c4962 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6015c4966 | |
| < "fileName": { | |
| --- | |
| > "modelOrgan": { | |
| 6029,6033c4980 | |
| < } | |
| < ] | |
| < }, | |
| < "fileSize": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6037c4984 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6039c4986,4988 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6041,6050c4990,4991 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileSource": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6054c4995 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6056c4997,4999 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6058,6067c5001,5002 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileVersion": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6071c5006 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6073c5008,5010 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6075,6079c5012 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6083c5016 | |
| < "genusSpecies": { | |
| --- | |
| > "modelOrganPart": { | |
| 6097,6101c5030 | |
| < } | |
| < ] | |
| < }, | |
| < "geoSeriesAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6105c5034 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6107c5036,5038 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6109,6118c5040,5041 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "insdcProjectAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6122c5045 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6124c5047,5049 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6126,6135c5051,5052 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "insdcStudyAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6139c5056 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6141c5058,5060 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6143,6147c5062 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6151c5066 | |
| < "institution": { | |
| --- | |
| > "nucleicAcidSource": { | |
| 6164a5080,5112 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6168c5116 | |
| < "instrumentManufacturerModel": { | |
| --- | |
| > "organ": { | |
| 6182,6186c5130 | |
| < } | |
| < ] | |
| < }, | |
| < "laboratory": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6190c5134 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6192c5136,5138 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6194,6203c5140,5141 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "libraryConstructionApproach": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6207c5145 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6209c5147,5149 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6211,6220c5151,5152 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6224c5156 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6226c5158,5160 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6228,6232c5162 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6236c5166 | |
| < "modelOrganPart": { | |
| --- | |
| > "organPart": { | |
| 6250,6254c5180 | |
| < } | |
| < ] | |
| < }, | |
| < "nucleicAcidSource": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6258c5184 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6260c5186,5188 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6262,6271c5190,5191 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organ": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6275c5195 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6277c5197,5199 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6279,6288c5201,5202 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organPart": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6292c5206 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6294c5208,5210 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6296,6300c5212 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6318,6322c5230 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6326c5234 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 6328,6334c5236,5237 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 6337,6338c5240 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6345,6351c5247,5248 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 6354,6355c5251 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6359a5256,5270 | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "organismAgeRange": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| 6375,6381c5286,5287 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 6384,6390c5290,5291 | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeUnit": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6394c5295 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6396c5297,5299 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6398,6407c5301,5302 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6411c5306 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6413c5308,5310 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6415,6419c5312 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6423c5316 | |
| < "pairedEnd": { | |
| --- | |
| > "organismAgeUnit": { | |
| 6437,6441c5330 | |
| < } | |
| < ] | |
| < }, | |
| < "preservationMethod": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6445c5334 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6447c5336,5338 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6449,6458c5340,5341 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "project": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6462c5345 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6464c5347,5349 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6466,6475c5351,5352 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectDescription": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6479c5356 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6481c5358,5360 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6483,6487c5362 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6491c5366 | |
| < "projectId": { | |
| --- | |
| > "organismAgeValue": { | |
| 6505,6509c5380 | |
| < } | |
| < ] | |
| < }, | |
| < "projectTitle": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6513c5384 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6515,6526c5386,5391 | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "publicationTitle": { | |
| < "oneOf": [ | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| 6530c5395 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6532c5397,5399 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6534,6538c5401,5412 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6542c5416 | |
| < "sampleDisease": { | |
| --- | |
| > "pairedEnd": { | |
| 6555a5430,5462 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6559c5466 | |
| < "sampleEntityType": { | |
| --- | |
| > "preservationMethod": { | |
| 6572a5480,5512 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6576c5516 | |
| < "sampleId": { | |
| --- | |
| > "project": { | |
| 6589a5530,5562 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6593c5566 | |
| < "selectedCellType": { | |
| --- | |
| > "projectDescription": { | |
| 6606a5580,5612 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6610c5616 | |
| < "specimenDisease": { | |
| --- | |
| > "projectId": { | |
| 6623a5630,5662 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6627c5666 | |
| < "specimenOrgan": { | |
| --- | |
| > "projectTitle": { | |
| 6640a5680,5712 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 6644c5716 | |
| < "specimenOrganPart": { | |
| --- | |
| > "publicationTitle": { | |
| 6658,6662c5730 | |
| < } | |
| < ] | |
| < }, | |
| < "workflow": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6666c5734 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6668c5736,5738 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6670,6863c5740,5741 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| < ] | |
| < } | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < }, | |
| < "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| < }, | |
| < { | |
| < "name": "size", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "integer", | |
| < "format": "int64", | |
| < "minimum": 1, | |
| < "maximum": 1000, | |
| < "default": 10 | |
| < }, | |
| < "description": "The number of hits included per page." | |
| < }, | |
| < { | |
| < "name": "sort", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "arrayExpressAccessions", | |
| < "assayType", | |
| < "biologicalSex", | |
| < "bundleUuid", | |
| < "bundleVersion", | |
| < "cellCount", | |
| < "cellLineType", | |
| < "contactName", | |
| < "developmentStage", | |
| < "donorCount", | |
| < "donorDisease", | |
| < "effectiveOrgan", | |
| < "entryId", | |
| < "fileFormat", | |
| < "fileId", | |
| < "fileName", | |
| < "fileSize", | |
| < "fileSource", | |
| < "fileVersion", | |
| < "genusSpecies", | |
| < "geoSeriesAccessions", | |
| < "insdcProjectAccessions", | |
| < "insdcStudyAccessions", | |
| < "institution", | |
| < "instrumentManufacturerModel", | |
| < "laboratory", | |
| < "libraryConstructionApproach", | |
| < "modelOrgan", | |
| < "modelOrganPart", | |
| < "nucleicAcidSource", | |
| < "organ", | |
| < "organPart", | |
| < "organismAge", | |
| < "organismAgeRange", | |
| < "organismAgeUnit", | |
| < "organismAgeValue", | |
| < "pairedEnd", | |
| < "preservationMethod", | |
| < "project", | |
| < "projectDescription", | |
| < "projectId", | |
| < "projectTitle", | |
| < "publicationTitle", | |
| < "sampleDisease", | |
| < "sampleEntityType", | |
| < "sampleId", | |
| < "selectedCellType", | |
| < "specimenDisease", | |
| < "specimenOrgan", | |
| < "specimenOrganPart", | |
| < "workflow" | |
| < ], | |
| < "default": "bundleVersion" | |
| < }, | |
| < "description": "The facet to sort the hits by." | |
| < }, | |
| < { | |
| < "name": "order", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "asc", | |
| < "desc" | |
| < ], | |
| < "default": "desc" | |
| < }, | |
| < "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| < }, | |
| < { | |
| < "name": "search_before", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_before_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < } | |
| < ] | |
| < }, | |
| < "get": { | |
| < "summary": "Search the bundles index for entities of interest.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "filters", | |
| < "in": "query", | |
| < "required": false, | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "arrayExpressAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6867c5745 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6869c5747,5749 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6871,6880c5751,5752 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "assayType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6884c5756 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6886c5758,5760 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6888,6892c5762 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6896c5766 | |
| < "biologicalSex": { | |
| --- | |
| > "sampleDisease": { | |
| 6910,6914c5780 | |
| < } | |
| < ] | |
| < }, | |
| < "bundleUuid": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6918c5784 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6920c5786,5788 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6922,6932c5790,5792 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "bundleVersion": { | |
| < "oneOf": [ | |
| < { | |
| --- | |
| > } | |
| > }, | |
| > { | |
| 6935c5795 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 6937c5797,5799 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6939,6948c5801,5802 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 6952c5806 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 6954c5808,5810 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6956,6960c5812 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 6964c5816 | |
| < "cellLineType": { | |
| --- | |
| > "sampleEntityType": { | |
| 6978,6982c5830 | |
| < } | |
| < ] | |
| < }, | |
| < "contactName": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 6986c5834 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 6988c5836,5838 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 6990,6999c5840,5841 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "developmentStage": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7003c5845 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7005c5847,5849 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7007,7016c5851,5852 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7020c5856 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 7022c5858,5860 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7024,7028c5862 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7032c5866 | |
| < "donorDisease": { | |
| --- | |
| > "sampleId": { | |
| 7046,7050c5880 | |
| < } | |
| < ] | |
| < }, | |
| < "effectiveOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7054c5884 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 7056c5886,5888 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7058,7067c5890,5891 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "entryId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7071c5895 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7073c5897,5899 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7075,7084c5901,5902 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileFormat": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7088c5906 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 7090c5908,5910 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7092,7096c5912 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7100c5916 | |
| < "fileId": { | |
| --- | |
| > "selectedCellType": { | |
| 7114,7118c5930 | |
| < } | |
| < ] | |
| < }, | |
| < "fileName": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7122c5934 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 7124c5936,5938 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7126,7135c5940,5941 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileSize": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7139c5945 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7141c5947,5949 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7143,7152c5951,5952 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileSource": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7156c5956 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 7158c5958,5960 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7160,7164c5962 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7168c5966 | |
| < "fileVersion": { | |
| --- | |
| > "specimenDisease": { | |
| 7182,7186c5980 | |
| < } | |
| < ] | |
| < }, | |
| < "genusSpecies": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7190c5984 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 7192c5986,5988 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7194,7203c5990,5991 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "geoSeriesAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7207c5995 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7209c5997,5999 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7211,7215c6001,6012 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 7219c6016 | |
| < "insdcProjectAccessions": { | |
| --- | |
| > "specimenOrgan": { | |
| 7233,7288c6030 | |
| < } | |
| < ] | |
| < }, | |
| < "insdcStudyAccessions": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "institution": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "instrumentManufacturerModel": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "laboratory": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7292c6034 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 7294c6036,6038 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7296,7305c6040,6041 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "libraryConstructionApproach": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7309c6045 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7311c6047,6049 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7313,7322c6051,6052 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7326c6056 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 7328c6058,6060 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7330,7334c6062 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7338c6066 | |
| < "modelOrganPart": { | |
| --- | |
| > "specimenOrganPart": { | |
| 7352,7356c6080 | |
| < } | |
| < ] | |
| < }, | |
| < "nucleicAcidSource": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7360c6084 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 7362c6086,6088 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7364,7373c6090,6091 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organ": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7377c6095 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 7379c6097,6099 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7381,7390c6101,6102 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organPart": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 7394c6106 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 7396c6108,6110 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 7398,7402c6112 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7406c6116 | |
| < "organismAge": { | |
| --- | |
| > "workflow": { | |
| 7420,7424c6130 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 7428c6134 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 7430,7436c6136,6137 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 7439,7440c6140 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7447,7453c6147,6148 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 7456,7470c6151 | |
| < }, | |
| < "additionalProperties": false | |
| < }, | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7475c6156 | |
| < "contains": { | |
| --- | |
| > "intersects": { | |
| 7477,7483c6158,6159 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 7486,7504c6162 | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeUnit": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7507,7788c6165,6174 | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "pairedEnd": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "preservationMethod": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "project": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectDescription": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectId": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectTitle": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "publicationTitle": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleDisease": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleEntityType": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleId": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "selectedCellType": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "specimenDisease": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "specimenOrgan": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "specimenOrganPart": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "workflow": { | |
| < "oneOf": [ | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| --- | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| 7791,7792c6177 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 7870c6255 | |
| < "default": "bundleVersion" | |
| --- | |
| > "default": "fileName" | |
| 7884c6269 | |
| < "default": "desc" | |
| --- | |
| > "default": "asc" | |
| 7931c6316 | |
| < "description": "\nPaginated list of bundles that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_bundles__bundle_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| --- | |
| > "description": "\nPaginated list of files that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_files__file_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| 8037c6422 | |
| < "/index/projects/{project_id}": { | |
| --- | |
| > "/index/samples/{sample_id}": { | |
| 8039c6424 | |
| < "summary": "Detailed information on a particular project entity.", | |
| --- | |
| > "summary": "Detailed information on a particular sample entity.", | |
| 8050d6434 | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| 8064c6448 | |
| < "name": "project_id", | |
| --- | |
| > "name": "sample_id", | |
| 8070c6454 | |
| < "description": "The UUID of the desired project" | |
| --- | |
| > "description": "The UUID of the desired sample" | |
| 8075c6459 | |
| < "description": "\nThis response describes a single project entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_projects).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the project's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| --- | |
| > "description": "\nThis response describes a single sample entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_samples).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the sample's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| 8157c6541 | |
| < "/index/projects": { | |
| --- | |
| > "/index/samples": { | |
| 8165c6549 | |
| < "description": "\nThe HEAD method can be used to test whether the\nprojects index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_projects).\n" | |
| --- | |
| > "description": "\nThe HEAD method can be used to test whether the\nsamples index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_samples).\n" | |
| 8175d6558 | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| 8211,8215c6594 | |
| < } | |
| < ] | |
| < }, | |
| < "assayType": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8219c6598 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8221c6600,6602 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8223,8232c6604,6605 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "biologicalSex": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8236c6609 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8238c6611,6613 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8240,8249c6615,6616 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "bundleUuid": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8253c6620 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8255c6622,6624 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8257,8261c6626 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8265c6630 | |
| < "bundleVersion": { | |
| --- | |
| > "assayType": { | |
| 8279,8283c6644 | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8287c6648 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8289c6650,6652 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8291,8300c6654,6655 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellLineType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8304c6659 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8306c6661,6663 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8308,8317c6665,6666 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "contactName": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8321c6670 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8323c6672,6674 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8325,8329c6676 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8333c6680 | |
| < "developmentStage": { | |
| --- | |
| > "biologicalSex": { | |
| 8347,8351c6694 | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8355c6698 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8357c6700,6702 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8359,8368c6704,6705 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorDisease": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8372c6709 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8374c6711,6713 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8376,8385c6715,6716 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "effectiveOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8389c6720 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8391c6722,6724 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8393,8397c6726 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8401c6730 | |
| < "entryId": { | |
| --- | |
| > "bundleUuid": { | |
| 8415,8419c6744 | |
| < } | |
| < ] | |
| < }, | |
| < "fileFormat": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8423c6748 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8425c6750,6752 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8427,8436c6754,6755 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8440c6759 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8442c6761,6763 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8444,8453c6765,6766 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileName": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8457c6770 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8459c6772,6774 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8461,8465c6776 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8469c6780 | |
| < "fileSize": { | |
| --- | |
| > "bundleVersion": { | |
| 8483,8487c6794 | |
| < } | |
| < ] | |
| < }, | |
| < "fileSource": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8491c6798 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8493c6800,6802 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8495,8504c6804,6805 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileVersion": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8508c6809 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8510c6811,6813 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8512,8521c6815,6816 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "genusSpecies": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8525c6820 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8527c6822,6824 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8529,8533c6826 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8537c6830 | |
| < "geoSeriesAccessions": { | |
| --- | |
| > "cellCount": { | |
| 8551,8555c6844 | |
| < } | |
| < ] | |
| < }, | |
| < "insdcProjectAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8559c6848 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8561c6850,6852 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8563,8572c6854,6855 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "insdcStudyAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8576c6859 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8578c6861,6863 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8580,8589c6865,6866 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "institution": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8593c6870 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8595c6872,6874 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8597,8601c6876 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8605c6880 | |
| < "instrumentManufacturerModel": { | |
| --- | |
| > "cellLineType": { | |
| 8619,8623c6894 | |
| < } | |
| < ] | |
| < }, | |
| < "laboratory": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8627c6898 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8629c6900,6902 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8631,8640c6904,6905 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "libraryConstructionApproach": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8644c6909 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8646c6911,6913 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8648,8657c6915,6916 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8661c6920 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8663c6922,6924 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8665,8669c6926 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8673c6930 | |
| < "modelOrganPart": { | |
| --- | |
| > "contactName": { | |
| 8687,8691c6944 | |
| < } | |
| < ] | |
| < }, | |
| < "nucleicAcidSource": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8695c6948 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8697c6950,6952 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8699,8708c6954,6955 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organ": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8712c6959 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8714c6961,6963 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8716,8725c6965,6966 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "organPart": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8729c6970 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8731c6972,6974 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8733,8737c6976 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8741c6980 | |
| < "organismAge": { | |
| --- | |
| > "developmentStage": { | |
| 8755,8759c6994 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8763c6998 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 8765,8771c7000,7001 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 8774,8775c7004 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8782,8788c7011,7012 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 8791,8805c7015 | |
| < }, | |
| < "additionalProperties": false | |
| < }, | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8810c7020 | |
| < "contains": { | |
| --- | |
| > "intersects": { | |
| 8812,8818c7022,7023 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 8821,8822c7026 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8826c7030 | |
| < "organismAgeUnit": { | |
| --- | |
| > "donorCount": { | |
| 8840,8844c7044 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8848c7048 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8850c7050,7052 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8852,8861c7054,7055 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "pairedEnd": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8865c7059 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8867c7061,7063 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8869,8878c7065,7066 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "preservationMethod": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8882c7070 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8884c7072,7074 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8886,8890c7076 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8894c7080 | |
| < "project": { | |
| --- | |
| > "donorDisease": { | |
| 8908,8912c7094 | |
| < } | |
| < ] | |
| < }, | |
| < "projectDescription": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8916c7098 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8918c7100,7102 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8920,8929c7104,7105 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8933c7109 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 8935c7111,7113 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8937,8946c7115,7116 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "projectTitle": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 8950c7120 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 8952c7122,7124 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8954,8958c7126 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 8962c7130 | |
| < "publicationTitle": { | |
| --- | |
| > "effectiveOrgan": { | |
| 8976,8980c7144 | |
| < } | |
| < ] | |
| < }, | |
| < "sampleDisease": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 8984c7148 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 8986c7150,7152 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 8988,8997c7154,7155 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleEntityType": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9001c7159 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9003c7161,7163 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9005,9014c7165,7166 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "sampleId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9018c7170 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9020c7172,7174 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9022,9026c7176 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9030c7180 | |
| < "selectedCellType": { | |
| --- | |
| > "entryId": { | |
| 9044,9048c7194 | |
| < } | |
| < ] | |
| < }, | |
| < "specimenDisease": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9052c7198 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9054c7200,7202 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9056,9065c7204,7205 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "specimenOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9069c7209 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9071c7211,7213 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9073,9077c7215,7226 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9081c7230 | |
| < "specimenOrganPart": { | |
| --- | |
| > "fileFormat": { | |
| 9094a7244,7276 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9098c7280 | |
| < "workflow": { | |
| --- | |
| > "fileId": { | |
| 9112,9300c7294 | |
| < } | |
| < ] | |
| < } | |
| < }, | |
| < "default": "{}", | |
| < "example": { | |
| < "cellCount": { | |
| < "within": [ | |
| < [ | |
| < 10000, | |
| < 1000000000 | |
| < ] | |
| < ] | |
| < } | |
| < }, | |
| < "additionalProperties": false | |
| < } | |
| < } | |
| < }, | |
| < "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| < }, | |
| < { | |
| < "name": "size", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "integer", | |
| < "format": "int64", | |
| < "minimum": 1, | |
| < "maximum": 1000, | |
| < "default": 10 | |
| < }, | |
| < "description": "The number of hits included per page." | |
| < }, | |
| < { | |
| < "name": "sort", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "arrayExpressAccessions", | |
| < "assayType", | |
| < "biologicalSex", | |
| < "bundleUuid", | |
| < "bundleVersion", | |
| < "cellCount", | |
| < "cellLineType", | |
| < "contactName", | |
| < "developmentStage", | |
| < "donorCount", | |
| < "donorDisease", | |
| < "effectiveOrgan", | |
| < "entryId", | |
| < "fileFormat", | |
| < "fileId", | |
| < "fileName", | |
| < "fileSize", | |
| < "fileSource", | |
| < "fileVersion", | |
| < "genusSpecies", | |
| < "geoSeriesAccessions", | |
| < "insdcProjectAccessions", | |
| < "insdcStudyAccessions", | |
| < "institution", | |
| < "instrumentManufacturerModel", | |
| < "laboratory", | |
| < "libraryConstructionApproach", | |
| < "modelOrgan", | |
| < "modelOrganPart", | |
| < "nucleicAcidSource", | |
| < "organ", | |
| < "organPart", | |
| < "organismAge", | |
| < "organismAgeRange", | |
| < "organismAgeUnit", | |
| < "organismAgeValue", | |
| < "pairedEnd", | |
| < "preservationMethod", | |
| < "project", | |
| < "projectDescription", | |
| < "projectId", | |
| < "projectTitle", | |
| < "publicationTitle", | |
| < "sampleDisease", | |
| < "sampleEntityType", | |
| < "sampleId", | |
| < "selectedCellType", | |
| < "specimenDisease", | |
| < "specimenOrgan", | |
| < "specimenOrganPart", | |
| < "workflow" | |
| < ], | |
| < "default": "projectTitle" | |
| < }, | |
| < "description": "The facet to sort the hits by." | |
| < }, | |
| < { | |
| < "name": "order", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "enum": [ | |
| < "asc", | |
| < "desc" | |
| < ], | |
| < "default": "asc" | |
| < }, | |
| < "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| < }, | |
| < { | |
| < "name": "search_before", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_before_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < }, | |
| < { | |
| < "name": "search_after_uid", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string" | |
| < }, | |
| < "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| < "deprecated": true | |
| < } | |
| < ] | |
| < }, | |
| < "get": { | |
| < "summary": "Search the projects index for entities of interest.", | |
| < "tags": [ | |
| < "Index" | |
| < ], | |
| < "parameters": [ | |
| < { | |
| < "name": "catalog", | |
| < "in": "query", | |
| < "required": false, | |
| < "schema": { | |
| < "type": "string", | |
| < "pattern": "^([a-z0-9]{1,64})$", | |
| < "enum": [ | |
| < "dcp2", | |
| < "dcp2ebi", | |
| < "lungmap", | |
| < "it2", | |
| < "it2ebi", | |
| < "it3lungmap" | |
| < ], | |
| < "default": "dcp2" | |
| < }, | |
| < "description": "The name of the catalog to query." | |
| < }, | |
| < { | |
| < "name": "filters", | |
| < "in": "query", | |
| < "required": false, | |
| < "content": { | |
| < "application/json": { | |
| < "schema": { | |
| < "type": "object", | |
| < "properties": { | |
| < "arrayExpressAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9304c7298 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9306c7300,7302 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9308,9312c7304,7326 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9316c7330 | |
| < "assayType": { | |
| --- | |
| > "fileName": { | |
| 9329a7344,7376 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9333c7380 | |
| < "biologicalSex": { | |
| --- | |
| > "fileSize": { | |
| 9347,9351c7394 | |
| < } | |
| < ] | |
| < }, | |
| < "bundleUuid": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9355c7398 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9357c7400,7402 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9359,9368c7404,7405 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "bundleVersion": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9372c7409 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9374c7411,7413 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9376,9385c7415,7416 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "cellCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9389c7420 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9391c7422,7424 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9393,9397c7426 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9401c7430 | |
| < "cellLineType": { | |
| --- | |
| > "fileSource": { | |
| 9415,9419c7444 | |
| < } | |
| < ] | |
| < }, | |
| < "contactName": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9423c7448 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9425c7450,7452 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9427,9436c7454,7455 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "developmentStage": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9440c7459 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9442c7461,7463 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9444,9453c7465,7466 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "donorCount": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9457c7470 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9459c7472,7474 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9461,9465c7476 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9469c7480 | |
| < "donorDisease": { | |
| --- | |
| > "fileVersion": { | |
| 9483,9487c7494 | |
| < } | |
| < ] | |
| < }, | |
| < "effectiveOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9491c7498 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9493c7500,7502 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9495,9504c7504,7505 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "entryId": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9508c7509 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9510c7511,7513 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9512,9521c7515,7516 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileFormat": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9525c7520 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9527c7522,7524 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9529,9533c7526 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9537c7530 | |
| < "fileId": { | |
| --- | |
| > "genusSpecies": { | |
| 9551,9555c7544 | |
| < } | |
| < ] | |
| < }, | |
| < "fileName": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9559c7548 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9561c7550,7552 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9563,9572c7554,7555 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "fileSize": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9576c7559 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9578c7561,7563 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9580,9584c7565,7576 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9588c7580 | |
| < "fileSource": { | |
| --- | |
| > "geoSeriesAccessions": { | |
| 9601a7594,7626 | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9605c7630 | |
| < "fileVersion": { | |
| --- | |
| > "insdcProjectAccessions": { | |
| 9619,9623c7644 | |
| < } | |
| < ] | |
| < }, | |
| < "genusSpecies": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9627c7648 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9629c7650,7652 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9631,9640c7654,7655 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "geoSeriesAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9644c7659 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9646c7661,7663 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9648,9657c7665,7666 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "insdcProjectAccessions": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9661c7670 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9663c7672,7674 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9665,9669c7676 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9687,9691c7694 | |
| < } | |
| < ] | |
| < }, | |
| < "institution": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9695c7698 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9697c7700,7702 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9699,9708c7704,7705 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "instrumentManufacturerModel": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9712c7709 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9714c7711,7713 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9716,9725c7715,7716 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "laboratory": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9729c7720 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9731c7722,7724 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9733,9737c7726 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9741c7730 | |
| < "libraryConstructionApproach": { | |
| --- | |
| > "institution": { | |
| 9755,9759c7744 | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrgan": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9763c7748 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9765c7750,7752 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9767,9776c7754,7755 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "modelOrganPart": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9780c7759 | |
| < "is": { | |
| --- | |
| > "within": { | |
| 9782c7761,7763 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9784,9793c7765,7766 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| < } | |
| < ] | |
| < }, | |
| < "nucleicAcidSource": { | |
| < "oneOf": [ | |
| --- | |
| > } | |
| > }, | |
| 9797c7770 | |
| < "is": { | |
| --- | |
| > "intersects": { | |
| 9799c7772,7774 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9801,9805c7776 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9809c7780 | |
| < "organ": { | |
| --- | |
| > "instrumentManufacturerModel": { | |
| 9823,9827c7794 | |
| < } | |
| < ] | |
| < }, | |
| < "organPart": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9831c7798 | |
| < "is": { | |
| --- | |
| > "contains": { | |
| 9833c7800,7802 | |
| < "items": {} | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| 9835,9839c7804,7826 | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| 9843c7830 | |
| < "organismAge": { | |
| --- | |
| > "laboratory": { | |
| 9857,9861c7844 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeRange": { | |
| < "oneOf": [ | |
| --- | |
| > }, | |
| 9865c7848 | |
| < "intersects": { | |
| --- | |
| > "contains": { | |
| 9867,9873c7850,7851 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 9876,9877c7854 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9884,9890c7861,7862 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 9893,9907c7865 | |
| < }, | |
| < "additionalProperties": false | |
| < }, | |
| < { | |
| < "type": "object", | |
| < "properties": { | |
| < "is": { | |
| < "type": "array", | |
| < "items": {} | |
| < } | |
| < }, | |
| < "required": [ | |
| < "is" | |
| < ], | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9912c7870 | |
| < "contains": { | |
| --- | |
| > "intersects": { | |
| 9914,9920c7872,7873 | |
| < "items": { | |
| < "type": "array", | |
| < "items": {}, | |
| < "minItems": 2, | |
| < "maxItems": 2 | |
| < }, | |
| < "minItems": 1, | |
| --- | |
| > "items": {}, | |
| > "minItems": 2, | |
| 9923,9924c7876 | |
| < }, | |
| < "additionalProperties": false | |
| --- | |
| > } | |
| 9928c7880 | |
| < "organismAgeUnit": { | |
| --- | |
| > "libraryConstructionApproach": { | |
| 9942,9946c7894 | |
| < } | |
| < ] | |
| < }, | |
| < "organismAgeValue": { | |
| < "oneOf": [ | |
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| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "publicationTitle": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleEntityType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "selectedCellType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "workflow": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| > ] | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| > }, | |
| > { | |
| > "name": "size", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "integer", | |
| > "format": "int64", | |
| > "minimum": 1, | |
| > "maximum": 1000, | |
| > "default": 10 | |
| > }, | |
| > "description": "The number of hits included per page." | |
| > }, | |
| > { | |
| > "name": "sort", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "arrayExpressAccessions", | |
| > "assayType", | |
| > "biologicalSex", | |
| > "bundleUuid", | |
| > "bundleVersion", | |
| > "cellCount", | |
| > "cellLineType", | |
| > "contactName", | |
| > "developmentStage", | |
| > "donorCount", | |
| > "donorDisease", | |
| > "effectiveOrgan", | |
| > "entryId", | |
| > "fileFormat", | |
| > "fileId", | |
| > "fileName", | |
| > "fileSize", | |
| > "fileSource", | |
| > "fileVersion", | |
| > "genusSpecies", | |
| > "geoSeriesAccessions", | |
| > "insdcProjectAccessions", | |
| > "insdcStudyAccessions", | |
| > "institution", | |
| > "instrumentManufacturerModel", | |
| > "laboratory", | |
| > "libraryConstructionApproach", | |
| > "modelOrgan", | |
| > "modelOrganPart", | |
| > "nucleicAcidSource", | |
| > "organ", | |
| > "organPart", | |
| > "organismAge", | |
| > "organismAgeRange", | |
| > "organismAgeUnit", | |
| > "organismAgeValue", | |
| > "pairedEnd", | |
| > "preservationMethod", | |
| > "project", | |
| > "projectDescription", | |
| > "projectId", | |
| > "projectTitle", | |
| > "publicationTitle", | |
| > "sampleDisease", | |
| > "sampleEntityType", | |
| > "sampleId", | |
| > "selectedCellType", | |
| > "specimenDisease", | |
| > "specimenOrgan", | |
| > "specimenOrganPart", | |
| > "workflow" | |
| > ], | |
| > "default": "sampleId" | |
| > }, | |
| > "description": "The facet to sort the hits by." | |
| > }, | |
| > { | |
| > "name": "order", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "asc", | |
| > "desc" | |
| > ], | |
| > "default": "asc" | |
| > }, | |
| > "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| > }, | |
| > { | |
| > "name": "search_before", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_before_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > } | |
| > ] | |
| > }, | |
| > "get": { | |
| > "summary": "Search the samples index for entities of interest.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "filters", | |
| > "in": "query", | |
| > "required": false, | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "arrayExpressAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "assayType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "biologicalSex": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
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| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "project": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "projectDescription": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "projectId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "projectTitle": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "publicationTitle": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleEntityType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "selectedCellType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "workflow": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| > ] | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| > }, | |
| > { | |
| > "name": "size", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "integer", | |
| > "format": "int64", | |
| > "minimum": 1, | |
| > "maximum": 1000, | |
| > "default": 10 | |
| > }, | |
| > "description": "The number of hits included per page." | |
| > }, | |
| > { | |
| > "name": "sort", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "arrayExpressAccessions", | |
| > "assayType", | |
| > "biologicalSex", | |
| > "bundleUuid", | |
| > "bundleVersion", | |
| > "cellCount", | |
| > "cellLineType", | |
| > "contactName", | |
| > "developmentStage", | |
| > "donorCount", | |
| > "donorDisease", | |
| > "effectiveOrgan", | |
| > "entryId", | |
| > "fileFormat", | |
| > "fileId", | |
| > "fileName", | |
| > "fileSize", | |
| > "fileSource", | |
| > "fileVersion", | |
| > "genusSpecies", | |
| > "geoSeriesAccessions", | |
| > "insdcProjectAccessions", | |
| > "insdcStudyAccessions", | |
| > "institution", | |
| > "instrumentManufacturerModel", | |
| > "laboratory", | |
| > "libraryConstructionApproach", | |
| > "modelOrgan", | |
| > "modelOrganPart", | |
| > "nucleicAcidSource", | |
| > "organ", | |
| > "organPart", | |
| > "organismAge", | |
| > "organismAgeRange", | |
| > "organismAgeUnit", | |
| > "organismAgeValue", | |
| > "pairedEnd", | |
| > "preservationMethod", | |
| > "project", | |
| > "projectDescription", | |
| > "projectId", | |
| > "projectTitle", | |
| > "publicationTitle", | |
| > "sampleDisease", | |
| > "sampleEntityType", | |
| > "sampleId", | |
| > "selectedCellType", | |
| > "specimenDisease", | |
| > "specimenOrgan", | |
| > "specimenOrganPart", | |
| > "workflow" | |
| > ], | |
| > "default": "sampleId" | |
| > }, | |
| > "description": "The facet to sort the hits by." | |
| > }, | |
| > { | |
| > "name": "order", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "asc", | |
| > "desc" | |
| > ], | |
| > "default": "asc" | |
| > }, | |
| > "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| > }, | |
| > { | |
| > "name": "search_before", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_before_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > } | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nPaginated list of samples that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_samples__sample_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "hits": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": { | |
| > "protocols": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "entryId": { | |
| > "type": "string" | |
| > }, | |
| > "samples": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "specimens": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "cellLines": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "donorOrganisms": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "organoids": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "string" | |
| > } | |
| > }, | |
| > "cellSuspensions": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > }, | |
| > "required": [ | |
| > "protocols", | |
| > "entryId", | |
| > "samples", | |
| > "specimens", | |
| > "cellLines", | |
| > "donorOrganisms", | |
| > "organoids", | |
| > "cellSuspensions" | |
| > ], | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "pagination": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > }, | |
| > "termFacets": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "required": [ | |
| > "hits", | |
| > "pagination", | |
| > "termFacets" | |
| > ], | |
| > "additionalProperties": false | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "/index/bundles/{bundle_id}": { | |
| > "get": { | |
| > "summary": "Detailed information on a particular bundle entity.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "bundle_id", | |
| > "in": "path", | |
| > "required": true, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "The UUID of the desired bundle" | |
| > } | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nThis response describes a single bundle entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_bundles).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the bundle's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "protocols": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "entryId": { | |
| > "type": "string" | |
| > }, | |
| > "samples": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "specimens": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "cellLines": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "donorOrganisms": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "organoids": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "string" | |
| > } | |
| > }, | |
| > "cellSuspensions": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > }, | |
| > "required": [ | |
| > "protocols", | |
| > "entryId", | |
| > "samples", | |
| > "specimens", | |
| > "cellLines", | |
| > "donorOrganisms", | |
| > "organoids", | |
| > "cellSuspensions" | |
| > ], | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "/index/bundles": { | |
| > "head": { | |
| > "summary": "Perform a query without returning its result.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nThe HEAD method can be used to test whether the\nbundles index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_bundles).\n" | |
| > } | |
| > }, | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "filters", | |
| > "in": "query", | |
| > "required": false, | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "arrayExpressAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "assayType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "biologicalSex": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleUuid": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleVersion": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellLineType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "contactName": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "developmentStage": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "donorCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
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| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "selectedCellType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "workflow": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| > ] | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| > }, | |
| > { | |
| > "name": "size", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "integer", | |
| > "format": "int64", | |
| > "minimum": 1, | |
| > "maximum": 1000, | |
| > "default": 10 | |
| > }, | |
| > "description": "The number of hits included per page." | |
| > }, | |
| > { | |
| > "name": "sort", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "arrayExpressAccessions", | |
| > "assayType", | |
| > "biologicalSex", | |
| > "bundleUuid", | |
| > "bundleVersion", | |
| > "cellCount", | |
| > "cellLineType", | |
| > "contactName", | |
| > "developmentStage", | |
| > "donorCount", | |
| > "donorDisease", | |
| > "effectiveOrgan", | |
| > "entryId", | |
| > "fileFormat", | |
| > "fileId", | |
| > "fileName", | |
| > "fileSize", | |
| > "fileSource", | |
| > "fileVersion", | |
| > "genusSpecies", | |
| > "geoSeriesAccessions", | |
| > "insdcProjectAccessions", | |
| > "insdcStudyAccessions", | |
| > "institution", | |
| > "instrumentManufacturerModel", | |
| > "laboratory", | |
| > "libraryConstructionApproach", | |
| > "modelOrgan", | |
| > "modelOrganPart", | |
| > "nucleicAcidSource", | |
| > "organ", | |
| > "organPart", | |
| > "organismAge", | |
| > "organismAgeRange", | |
| > "organismAgeUnit", | |
| > "organismAgeValue", | |
| > "pairedEnd", | |
| > "preservationMethod", | |
| > "project", | |
| > "projectDescription", | |
| > "projectId", | |
| > "projectTitle", | |
| > "publicationTitle", | |
| > "sampleDisease", | |
| > "sampleEntityType", | |
| > "sampleId", | |
| > "selectedCellType", | |
| > "specimenDisease", | |
| > "specimenOrgan", | |
| > "specimenOrganPart", | |
| > "workflow" | |
| > ], | |
| > "default": "bundleVersion" | |
| > }, | |
| > "description": "The facet to sort the hits by." | |
| > }, | |
| > { | |
| > "name": "order", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "asc", | |
| > "desc" | |
| > ], | |
| > "default": "desc" | |
| > }, | |
| > "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| > }, | |
| > { | |
| > "name": "search_before", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_before_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > } | |
| > ] | |
| > }, | |
| > "get": { | |
| > "summary": "Search the bundles index for entities of interest.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "filters", | |
| > "in": "query", | |
| > "required": false, | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "arrayExpressAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "assayType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "biologicalSex": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleUuid": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleVersion": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
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| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "projectId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "projectTitle": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "publicationTitle": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleEntityType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "sampleId": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "selectedCellType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "workflow": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| > ] | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| > }, | |
| > { | |
| > "name": "size", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "integer", | |
| > "format": "int64", | |
| > "minimum": 1, | |
| > "maximum": 1000, | |
| > "default": 10 | |
| > }, | |
| > "description": "The number of hits included per page." | |
| > }, | |
| > { | |
| > "name": "sort", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "arrayExpressAccessions", | |
| > "assayType", | |
| > "biologicalSex", | |
| > "bundleUuid", | |
| > "bundleVersion", | |
| > "cellCount", | |
| > "cellLineType", | |
| > "contactName", | |
| > "developmentStage", | |
| > "donorCount", | |
| > "donorDisease", | |
| > "effectiveOrgan", | |
| > "entryId", | |
| > "fileFormat", | |
| > "fileId", | |
| > "fileName", | |
| > "fileSize", | |
| > "fileSource", | |
| > "fileVersion", | |
| > "genusSpecies", | |
| > "geoSeriesAccessions", | |
| > "insdcProjectAccessions", | |
| > "insdcStudyAccessions", | |
| > "institution", | |
| > "instrumentManufacturerModel", | |
| > "laboratory", | |
| > "libraryConstructionApproach", | |
| > "modelOrgan", | |
| > "modelOrganPart", | |
| > "nucleicAcidSource", | |
| > "organ", | |
| > "organPart", | |
| > "organismAge", | |
| > "organismAgeRange", | |
| > "organismAgeUnit", | |
| > "organismAgeValue", | |
| > "pairedEnd", | |
| > "preservationMethod", | |
| > "project", | |
| > "projectDescription", | |
| > "projectId", | |
| > "projectTitle", | |
| > "publicationTitle", | |
| > "sampleDisease", | |
| > "sampleEntityType", | |
| > "sampleId", | |
| > "selectedCellType", | |
| > "specimenDisease", | |
| > "specimenOrgan", | |
| > "specimenOrganPart", | |
| > "workflow" | |
| > ], | |
| > "default": "bundleVersion" | |
| > }, | |
| > "description": "The facet to sort the hits by." | |
| > }, | |
| > { | |
| > "name": "order", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "asc", | |
| > "desc" | |
| > ], | |
| > "default": "desc" | |
| > }, | |
| > "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| > }, | |
| > { | |
| > "name": "search_before", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_before_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > } | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nPaginated list of bundles that meet the search\ncriteria (\"hits\"). The structure of these hits is documented\nunder the [corresponding endpoint for a specific entity](#operations-Index-get_index_bundles__bundle_id_).\n\nThe `pagination` section describes the total number of hits\nand total number of pages, as well as user-supplied search\nparameters for page size and sorting behavior. It also\nprovides links for navigating forwards and backwards between\npages of results.\n\nThe `termFacets` section tabulates the occurrence of unique\nvalues within nested fields of the `hits` section across all\nentities meeting the filter criteria (this includes entities\nnot listed on the current page, meaning that this section\nwill be invariable across all pages from the same search).\nNot every nested field is tabulated, but the set of\ntabulated fields is consistent between entity types.\n", | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "hits": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": { | |
| > "protocols": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "entryId": { | |
| > "type": "string" | |
| > }, | |
| > "samples": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "specimens": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "cellLines": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "donorOrganisms": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "organoids": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "string" | |
| > } | |
| > }, | |
| > "cellSuspensions": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > }, | |
| > "required": [ | |
| > "protocols", | |
| > "entryId", | |
| > "samples", | |
| > "specimens", | |
| > "cellLines", | |
| > "donorOrganisms", | |
| > "organoids", | |
| > "cellSuspensions" | |
| > ], | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "pagination": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > }, | |
| > "termFacets": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "required": [ | |
| > "hits", | |
| > "pagination", | |
| > "termFacets" | |
| > ], | |
| > "additionalProperties": false | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "/index/projects/{project_id}": { | |
| > "get": { | |
| > "summary": "Detailed information on a particular project entity.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "project_id", | |
| > "in": "path", | |
| > "required": true, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "The UUID of the desired project" | |
| > } | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nThis response describes a single project entity. To\nsearch the index for multiple entities, see the\n[corresponding search endpoint](#operations-Index-get_index_projects).\n\nThe properties that are common to all entity types are\nlisted in the schema below; however, additional properties\nmay be present for certain entity types. With the exception\nof the project's unique identifier, all\nproperties are arrays, even in cases where only one value is\npresent.\n\nThe structures of the objects within these arrays are not\nperfectly consistent, since they may represent either\nsingleton entities or aggregations depending on context.\n\nFor example, any biomaterial that yields a cell suspension\nwhich yields a sequence file will be considered a \"sample\".\nTherefore, the `samples` field is polymorphic, and each\nsample may be either a specimen, an organoid, or a cell\nline (the field `sampleEntityType` can be used to\ndiscriminate between these cases).\n", | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "protocols": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "entryId": { | |
| > "type": "string" | |
| > }, | |
| > "samples": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "specimens": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "cellLines": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "donorOrganisms": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > }, | |
| > "organoids": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "string" | |
| > } | |
| > }, | |
| > "cellSuspensions": { | |
| > "type": "array", | |
| > "items": { | |
| > "type": "object", | |
| > "properties": {}, | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > }, | |
| > "required": [ | |
| > "protocols", | |
| > "entryId", | |
| > "samples", | |
| > "specimens", | |
| > "cellLines", | |
| > "donorOrganisms", | |
| > "organoids", | |
| > "cellSuspensions" | |
| > ], | |
| > "additionalProperties": true | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "/index/projects": { | |
| > "head": { | |
| > "summary": "Perform a query without returning its result.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "responses": { | |
| > "200": { | |
| > "description": "\nThe HEAD method can be used to test whether the\nprojects index is operational, or to check the validity\nof query parameters for the\n[GET method](#operations-Index-get_index_projects).\n" | |
| > } | |
| > }, | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "filters", | |
| > "in": "query", | |
| > "required": false, | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "arrayExpressAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "assayType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "biologicalSex": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleUuid": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleVersion": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellLineType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "contactName": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "developmentStage": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "donorCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "donorDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "effectiveOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
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| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenDisease": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "specimenOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "workflow": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > } | |
| > }, | |
| > "default": "{}", | |
| > "example": { | |
| > "cellCount": { | |
| > "within": [ | |
| > [ | |
| > 10000, | |
| > 1000000000 | |
| > ] | |
| > ] | |
| > } | |
| > } | |
| > } | |
| > } | |
| > }, | |
| > "description": "\nCriteria to filter entities from the search results.\n\nEach filter consists of a facet name, a relational operator, and an\narray of facet values. The available operators are \"is\", \"within\",\n\"contains\", and \"intersects\". Multiple filters are combined using \"and\"\nlogic. An entity must match all filters to be included in the response.\nHow multiple facet values within a single filter are combined depends\non the operator.\n\nFor the \"is\" operator, multiple values are combined using \"or\"\nlogic. For example, `{\"fileFormat\": {\"is\": [\"fastq\", \"fastq.gz\"]}}`\nselects entities where the file format is either \"fastq\" or\n\"fastq.gz\". For the \"within\", \"intersects\", and \"contains\"\noperators, the facet values must come in nested pairs specifying\nupper and lower bounds, and multiple pairs are combined using \"and\"\nlogic. For example, `{\"donorCount\": {\"within\": [[1,5], [5,10]]}}`\nselects entities whose donor organism count falls within both\nranges, i.e., is exactly 5.\n\nThe organismAge facet is special in that it contains two property keys:\nvalue and unit. For example, `{\"organismAge\": {\"is\": [{\"value\": \"20\",\n\"unit\": \"year\"}]}}`. Both keys are required. `{\"organismAge\": {\"is\":\n[null]}}` selects entities that have no organism age.\n\nSupported facet names are: arrayExpressAccessions, assayType, biologicalSex, bundleUuid, bundleVersion, cellCount, cellLineType, contactName, developmentStage, donorCount, donorDisease, effectiveOrgan, entryId, fileFormat, fileId, fileName, fileSize, fileSource, fileVersion, genusSpecies, geoSeriesAccessions, insdcProjectAccessions, insdcStudyAccessions, institution, instrumentManufacturerModel, laboratory, libraryConstructionApproach, modelOrgan, modelOrganPart, nucleicAcidSource, organ, organPart, organismAge, organismAgeRange, organismAgeUnit, organismAgeValue, pairedEnd, preservationMethod, project, projectDescription, projectId, projectTitle, publicationTitle, sampleDisease, sampleEntityType, sampleId, selectedCellType, specimenDisease, specimenOrgan, specimenOrganPart, workflow\n" | |
| > }, | |
| > { | |
| > "name": "size", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "integer", | |
| > "format": "int64", | |
| > "minimum": 1, | |
| > "maximum": 1000, | |
| > "default": 10 | |
| > }, | |
| > "description": "The number of hits included per page." | |
| > }, | |
| > { | |
| > "name": "sort", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "arrayExpressAccessions", | |
| > "assayType", | |
| > "biologicalSex", | |
| > "bundleUuid", | |
| > "bundleVersion", | |
| > "cellCount", | |
| > "cellLineType", | |
| > "contactName", | |
| > "developmentStage", | |
| > "donorCount", | |
| > "donorDisease", | |
| > "effectiveOrgan", | |
| > "entryId", | |
| > "fileFormat", | |
| > "fileId", | |
| > "fileName", | |
| > "fileSize", | |
| > "fileSource", | |
| > "fileVersion", | |
| > "genusSpecies", | |
| > "geoSeriesAccessions", | |
| > "insdcProjectAccessions", | |
| > "insdcStudyAccessions", | |
| > "institution", | |
| > "instrumentManufacturerModel", | |
| > "laboratory", | |
| > "libraryConstructionApproach", | |
| > "modelOrgan", | |
| > "modelOrganPart", | |
| > "nucleicAcidSource", | |
| > "organ", | |
| > "organPart", | |
| > "organismAge", | |
| > "organismAgeRange", | |
| > "organismAgeUnit", | |
| > "organismAgeValue", | |
| > "pairedEnd", | |
| > "preservationMethod", | |
| > "project", | |
| > "projectDescription", | |
| > "projectId", | |
| > "projectTitle", | |
| > "publicationTitle", | |
| > "sampleDisease", | |
| > "sampleEntityType", | |
| > "sampleId", | |
| > "selectedCellType", | |
| > "specimenDisease", | |
| > "specimenOrgan", | |
| > "specimenOrganPart", | |
| > "workflow" | |
| > ], | |
| > "default": "projectTitle" | |
| > }, | |
| > "description": "The facet to sort the hits by." | |
| > }, | |
| > { | |
| > "name": "order", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "asc", | |
| > "desc" | |
| > ], | |
| > "default": "asc" | |
| > }, | |
| > "description": "\nThe ordering of the sorted hits, either ascending\nor descending.\n" | |
| > }, | |
| > { | |
| > "name": "search_before", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_before_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > }, | |
| > { | |
| > "name": "search_after_uid", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string" | |
| > }, | |
| > "description": "\nUse the `next` and `previous` properties of the\n`pagination` response element to navigate between pages.\n", | |
| > "deprecated": true | |
| > } | |
| > ] | |
| > }, | |
| > "get": { | |
| > "summary": "Search the projects index for entities of interest.", | |
| > "tags": [ | |
| > "Index" | |
| > ], | |
| > "parameters": [ | |
| > { | |
| > "name": "catalog", | |
| > "in": "query", | |
| > "required": false, | |
| > "schema": { | |
| > "type": "string", | |
| > "enum": [ | |
| > "dcp2", | |
| > "dcp2ebi", | |
| > "lungmap", | |
| > "it2", | |
| > "it2ebi", | |
| > "it3lungmap" | |
| > ], | |
| > "default": "dcp2" | |
| > }, | |
| > "description": "The name of the catalog to query." | |
| > }, | |
| > { | |
| > "name": "filters", | |
| > "in": "query", | |
| > "required": false, | |
| > "content": { | |
| > "application/json": { | |
| > "schema": { | |
| > "type": "object", | |
| > "properties": { | |
| > "arrayExpressAccessions": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "assayType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "biologicalSex": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleUuid": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "bundleVersion": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellCount": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "cellLineType": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "contactName": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
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| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "laboratory": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "libraryConstructionApproach": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "modelOrgan": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "within": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "intersects": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > } | |
| > } | |
| > ] | |
| > }, | |
| > "modelOrganPart": { | |
| > "oneOf": [ | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "is": { | |
| > "type": "array", | |
| > "items": {} | |
| > } | |
| > }, | |
| > "required": [ | |
| > "is" | |
| > ], | |
| > "additionalProperties": false | |
| > }, | |
| > { | |
| > "type": "object", | |
| > "properties": { | |
| > "contains": { | |
| > "type": "array", | |
| > "items": {}, | |
| > "minItems": 2, | |
| > "maxItems": 2 | |
| > } | |
| > |
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