Anders Goncalves da Silva andersgs

## dummy_data.csv

          
            GROUP
            LOCUS1 
            LOCUS2
            LOCUS3

            
              A
              1
              1
              2

            
              A
              2
              1
              2

            
              B
              1
              3
              2

            
              B
              2
              4
              2

            
              B
              2
              4
              1

## pyproject.toml
[tool.poetry]
name = "bigsdbcli"
version = "0.1.0"
description = "A commandline interface to BIGSDB API"
license = "GPL-3.0"
readme = 'README.rst'


[tool.poetry.dependencies]
python = "3.7"

## # r - 2018-07-21_20-36-57.txt
Homebrew build logs for r on macOS 10.14
Build date: 2018-07-21 20:36:57

## jobarray_process_radtags.sh
#!/bin/bash
#SBATCH --time=06:00:00
#SBATCH --mem=16G
#SBATCH --mail-user=andersgs@gmail.com
#SBATCH --mail-type=BEGIN
#SBATCH --mail-type=END
#SBATCH --mail-type=FAIL
#SBATCH --mail-type=REQUEUE
#SBATCH --mail-type=ALL

## job_array_demo.sh
#!/bin/bash
# Illustrating the use of job arrays in SLURM
# use the command: sbatch --array=1-100 job_array_demo.sh

# Partition for the job:
#SBATCH -p main

# Multithreaded (SMP) job: must run on one node
#SBATCH --nodes=1

## interative_tree.R
# LOAD LIBS ---------------------------------------------------------------
library(ape)
library(ggtree)
library(plotly)

# CREATE A TREE -------------------------------------------------------------
n_samples <- 20
n_grp <- 4
tree <- ape::rtree(n = n_samples)
	[tool.poetry]
	name = "bigsdbcli"
	version = "0.1.0"
	description = "A commandline interface to BIGSDB API"
	license = "GPL-3.0"
	readme = 'README.rst'


	[tool.poetry.dependencies]
	python = "3.7"
	Homebrew build logs for r on macOS 10.14
	Build date: 2018-07-21 20:36:57
	#!/bin/bash
	#SBATCH --time=06:00:00
	#SBATCH --mem=16G
	#SBATCH --mail-user=andersgs@gmail.com
	#SBATCH --mail-type=BEGIN
	#SBATCH --mail-type=END
	#SBATCH --mail-type=FAIL
	#SBATCH --mail-type=REQUEUE
	#SBATCH --mail-type=ALL
	#!/bin/bash
	# Illustrating the use of job arrays in SLURM
	# use the command: sbatch --array=1-100 job_array_demo.sh

	# Partition for the job:
	#SBATCH -p main

	# Multithreaded (SMP) job: must run on one node
	#SBATCH --nodes=1
	# LOAD LIBS ---------------------------------------------------------------
	library(ape)
	library(ggtree)
	library(plotly)

	# CREATE A TREE -------------------------------------------------------------
	n_samples <- 20
	n_grp <- 4
	tree <- ape::rtree(n = n_samples)