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@andersy005
Last active December 28, 2019 10:49
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Semi auto-generated YAML file for CMIP6 data on Glade: Generate YAML file for CMIP6 data on GLade
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{
"cells": [
{
"cell_type": "code",
"execution_count": 2,
"metadata": {},
"outputs": [
{
"name": "stderr",
"output_type": "stream",
"text": [
"/glade/work/abanihi/softwares/miniconda3/envs/analysis/lib/python3.7/site-packages/tqdm/autonotebook/__init__.py:18: TqdmExperimentalWarning: Using `tqdm.autonotebook.tqdm` in notebook mode. Use `tqdm.tqdm` instead to force console mode (e.g. in jupyter console)\n",
" \" (e.g. in jupyter console)\", TqdmExperimentalWarning)\n"
]
}
],
"source": [
"from pathlib import Path\n",
"import yaml\n",
"from intake.utils import yaml_load\n",
"from jinja2 import Environment, FileSystemLoader\n",
"import os"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Generate Input Data"
]
},
{
"cell_type": "code",
"execution_count": 3,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'collection_type': 'cmip5',\n",
" 'collection_name': 'GLADE-CMIP5',\n",
" 'root_dir': '/glade/collections/cmip/cmip5'}"
]
},
"execution_count": 3,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data = {'collection_type': 'cmip5',\n",
" 'collection_name': 'GLADE-CMIP5',\n",
" 'root_dir': '/glade/collections/cmip/cmip5'}\n",
"config_data"
]
},
{
"cell_type": "code",
"execution_count": 5,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"[PosixPath('/glade/collections/cmip/cmip5/output'),\n",
" PosixPath('/glade/collections/cmip/cmip5/output1'),\n",
" PosixPath('/glade/collections/cmip/cmip5/output2')]"
]
},
"execution_count": 5,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"product_ids = sorted(list(Path(config_data['root_dir']).glob(\"*\")))\n",
"product_ids"
]
},
{
"cell_type": "code",
"execution_count": 6,
"metadata": {},
"outputs": [],
"source": [
"d = {}\n",
"for product in product_ids:\n",
" institutes = sorted(list(product.glob(\"*\")))\n",
" models = {}\n",
" for institute in institutes:\n",
" models[institute.stem] = [path.stem for path in sorted(institute.glob(\"*\"))]\n",
" d[institute.parent.stem] = models\n",
"config_data['products'] = d"
]
},
{
"cell_type": "code",
"execution_count": 7,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"dict_keys(['collection_type', 'collection_name', 'root_dir', 'products'])"
]
},
"execution_count": 7,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data.keys()"
]
},
{
"cell_type": "code",
"execution_count": 8,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'collection_type': 'cmip5',\n",
" 'collection_name': 'GLADE-CMIP5',\n",
" 'root_dir': '/glade/collections/cmip/cmip5',\n",
" 'products': {'output': {'CCCma': ['CanCM4', 'CanESM2']},\n",
" 'output1': {'BCC': ['bcc-csm1-1', 'bcc-csm1-1-m'],\n",
" 'BNU': ['BNU-ESM'],\n",
" 'CCCma': ['CanCM4', 'CanESM2'],\n",
" 'CMCC': ['CMCC-CESM', 'CMCC-CM', 'CMCC-CMS'],\n",
" 'CNRM-CERFACS': ['CNRM-CM5', 'CNRM-CM5-2'],\n",
" 'CSIRO-BOM': ['ACCESS1-0', 'ACCESS1-3', 'ACCESS1'],\n",
" 'CSIRO-QCCCE': ['CSIRO-Mk3-6-0'],\n",
" 'FIO': ['FIO-ESM', 'fio-esm'],\n",
" 'ICHEC': ['EC-EARTH'],\n",
" 'INM': ['inmcm4'],\n",
" 'INPE': ['HadGEM2-ES'],\n",
" 'IPSL': ['IPSL-CM5A-LR', 'IPSL-CM5A-MR', 'IPSL-CM5B-LR'],\n",
" 'LASG-CESS': ['FGOALS-g2'],\n",
" 'LASG-IAP': ['FGOALS-s2'],\n",
" 'MIROC': ['MIROC-ESM', 'MIROC-ESM-CHEM', 'MIROC4h', 'MIROC5'],\n",
" 'MOHC': ['HadCM3', 'HadGEM2-A', 'HadGEM2-CC', 'HadGEM2-ES'],\n",
" 'MPI-M': ['MPI-ESM-LR', 'MPI-ESM-MR', 'MPI-ESM-P'],\n",
" 'MRI': ['MRI-AGCM3-2H', 'MRI-AGCM3-2S', 'MRI-CGCM3', 'MRI-ESM1'],\n",
" 'NASA-GISS': ['GISS-E2-H', 'GISS-E2-H-CC', 'GISS-E2-R', 'GISS-E2-R-CC'],\n",
" 'NCAR': ['CCSM4'],\n",
" 'NCC': ['NorESM1-M', 'NorESM1-ME'],\n",
" 'NIMR-KMA': ['HadGEM2-AO'],\n",
" 'NOAA-GFDL': ['GFDL-CM2p1', 'GFDL-CM3', 'GFDL-ESM2G', 'GFDL-ESM2M'],\n",
" 'NSF-DOE-NCAR': ['CESM1-BGC',\n",
" 'CESM1-CAM5',\n",
" 'CESM1-FASTCHEM',\n",
" 'CESM1-WACCM'],\n",
" 'UNSW': ['CSIRO-Mk3L-1-2']},\n",
" 'output2': {'CMCC': ['CMCC-CESM', 'CMCC-CMS'],\n",
" 'ICHEC': ['EC-EARTH'],\n",
" 'INM': ['inmcm4'],\n",
" 'INPE': ['HadGEM2-ES'],\n",
" 'IPSL': ['IPSL-CM5A-LR', 'IPSL-CM5A-MR', 'IPSL-CM5B-LR'],\n",
" 'MIROC': ['MIROC-ESM', 'MIROC4h', 'MIROC5'],\n",
" 'MOHC': ['HadCM3', 'HadGEM2-ES'],\n",
" 'MPI-M': ['MPI-ESM-LR'],\n",
" 'MRI': ['MRI-CGCM3', 'MRI-ESM1'],\n",
" 'NASA-GISS': ['GISS-E2-H', 'GISS-E2-R'],\n",
" 'NCAR': ['CCSM4'],\n",
" 'NCC': ['NorESM1-M', 'NorESM1-ME'],\n",
" 'NSF-DOE-NCAR': ['CESM1-BGC',\n",
" 'CESM1-CAM5',\n",
" 'CESM1-FASTCHEM',\n",
" 'CESM1-WACCM']}}}"
]
},
"execution_count": 8,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"config_data"
]
},
{
"cell_type": "code",
"execution_count": 12,
"metadata": {},
"outputs": [],
"source": [
"with open('cmip5-input.yaml', 'w') as outfile:\n",
" yaml.dump(config_data, outfile, default_flow_style=False)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"## Render the template using the input data"
]
},
{
"cell_type": "code",
"execution_count": 13,
"metadata": {},
"outputs": [],
"source": [
"def generator(config_data_file_path, template_file_path):\n",
" # Load data from YAML into Python dictionary\n",
" config_data = yaml_load(open(config_data_file_path))\n",
"\n",
" # Load Jinja2 template\n",
" template_dir = os.path.dirname(os.path.abspath(template_file_path))\n",
"\n",
" env = Environment(loader=FileSystemLoader(template_dir), trim_blocks=True, lstrip_blocks=True)\n",
"\n",
" template = env.get_template(os.path.basename(template_file_path))\n",
"\n",
"\n",
" # Render the template with data and print the output\n",
" data = template.render(config_data)\n",
" \n",
" \n",
" return data"
]
},
{
"cell_type": "code",
"execution_count": 14,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"name: GLADE-CMIP5\n",
"collection_type: cmip5\n",
"data_sources:\n",
" CCCma-CanCM4-output:\n",
" locations:\n",
" - name: GLADE-CCCma-CanCM4-output\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanCM4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output\n",
" activity: CMIP5\n",
" institute: CCCma\n",
"\n",
" CCCma-CanESM2-output:\n",
" locations:\n",
" - name: GLADE-CCCma-CanESM2-output\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output\n",
" activity: CMIP5\n",
" institute: CCCma\n",
"\n",
" BCC-bcc-csm1-1-output1:\n",
" locations:\n",
" - name: GLADE-BCC-bcc-csm1-1-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: BCC\n",
"\n",
" BCC-bcc-csm1-1-m-output1:\n",
" locations:\n",
" - name: GLADE-BCC-bcc-csm1-1-m-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1-m\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: BCC\n",
"\n",
" BNU-BNU-ESM-output1:\n",
" locations:\n",
" - name: GLADE-BNU-BNU-ESM-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/BNU/BNU-ESM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: BNU\n",
"\n",
" CCCma-CanCM4-output1:\n",
" locations:\n",
" - name: GLADE-CCCma-CanCM4-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanCM4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CCCma\n",
"\n",
" CCCma-CanESM2-output1:\n",
" locations:\n",
" - name: GLADE-CCCma-CanESM2-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanESM2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CCCma\n",
"\n",
" CMCC-CMCC-CESM-output1:\n",
" locations:\n",
" - name: GLADE-CMCC-CMCC-CESM-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CESM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CMCC\n",
"\n",
" CMCC-CMCC-CM-output1:\n",
" locations:\n",
" - name: GLADE-CMCC-CMCC-CM-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CMCC\n",
"\n",
" CMCC-CMCC-CMS-output1:\n",
" locations:\n",
" - name: GLADE-CMCC-CMCC-CMS-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CMS\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CMCC\n",
"\n",
" CNRM-CERFACS-CNRM-CM5-output1:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-CM5-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CNRM-CERFACS\n",
"\n",
" CNRM-CERFACS-CNRM-CM5-2-output1:\n",
" locations:\n",
" - name: GLADE-CNRM-CERFACS-CNRM-CM5-2-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5-2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CNRM-CERFACS\n",
"\n",
" CSIRO-BOM-ACCESS1-0-output1:\n",
" locations:\n",
" - name: GLADE-CSIRO-BOM-ACCESS1-0-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CSIRO-BOM\n",
"\n",
" CSIRO-BOM-ACCESS1-3-output1:\n",
" locations:\n",
" - name: GLADE-CSIRO-BOM-ACCESS1-3-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-3\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CSIRO-BOM\n",
"\n",
" CSIRO-BOM-ACCESS1-output1:\n",
" locations:\n",
" - name: GLADE-CSIRO-BOM-ACCESS1-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CSIRO-BOM\n",
"\n",
" CSIRO-QCCCE-CSIRO-Mk3-6-0-output1:\n",
" locations:\n",
" - name: GLADE-CSIRO-QCCCE-CSIRO-Mk3-6-0-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-QCCCE/CSIRO-Mk3-6-0\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: CSIRO-QCCCE\n",
"\n",
" FIO-FIO-ESM-output1:\n",
" locations:\n",
" - name: GLADE-FIO-FIO-ESM-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/FIO/FIO-ESM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: FIO\n",
"\n",
" FIO-fio-esm-output1:\n",
" locations:\n",
" - name: GLADE-FIO-fio-esm-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/FIO/fio-esm\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: FIO\n",
"\n",
" ICHEC-EC-EARTH-output1:\n",
" locations:\n",
" - name: GLADE-ICHEC-EC-EARTH-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/ICHEC/EC-EARTH\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: ICHEC\n",
"\n",
" INM-inmcm4-output1:\n",
" locations:\n",
" - name: GLADE-INM-inmcm4-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/INM/inmcm4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: INM\n",
"\n",
" INPE-HadGEM2-ES-output1:\n",
" locations:\n",
" - name: GLADE-INPE-HadGEM2-ES-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/INPE/HadGEM2-ES\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: INPE\n",
"\n",
" IPSL-IPSL-CM5A-LR-output1:\n",
" locations:\n",
" - name: GLADE-IPSL-IPSL-CM5A-LR-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: IPSL\n",
"\n",
" IPSL-IPSL-CM5A-MR-output1:\n",
" locations:\n",
" - name: GLADE-IPSL-IPSL-CM5A-MR-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-MR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: IPSL\n",
"\n",
" IPSL-IPSL-CM5B-LR-output1:\n",
" locations:\n",
" - name: GLADE-IPSL-IPSL-CM5B-LR-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5B-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: IPSL\n",
"\n",
" LASG-CESS-FGOALS-g2-output1:\n",
" locations:\n",
" - name: GLADE-LASG-CESS-FGOALS-g2-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/LASG-CESS/FGOALS-g2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: LASG-CESS\n",
"\n",
" LASG-IAP-FGOALS-s2-output1:\n",
" locations:\n",
" - name: GLADE-LASG-IAP-FGOALS-s2-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output1/LASG-IAP/FGOALS-s2\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output1\n",
" activity: CMIP5\n",
" institute: LASG-IAP\n",
"\n",
" MIROC-MIROC-ESM-output1:\n",
" locations:\n",
" - name: GLADE-MIROC-MIROC-ESM-output1\n",
" loc_type: posix\n",
" direct_access: True \n",
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"\n",
" MIROC-MIROC5-output2:\n",
" locations:\n",
" - name: GLADE-MIROC-MIROC5-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MIROC/MIROC5\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MIROC\n",
"\n",
" MOHC-HadCM3-output2:\n",
" locations:\n",
" - name: GLADE-MOHC-HadCM3-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MOHC/HadCM3\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MOHC\n",
"\n",
" MOHC-HadGEM2-ES-output2:\n",
" locations:\n",
" - name: GLADE-MOHC-HadGEM2-ES-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MOHC/HadGEM2-ES\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MOHC\n",
"\n",
" MPI-M-MPI-ESM-LR-output2:\n",
" locations:\n",
" - name: GLADE-MPI-M-MPI-ESM-LR-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MPI-M/MPI-ESM-LR\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MPI-M\n",
"\n",
" MRI-MRI-CGCM3-output2:\n",
" locations:\n",
" - name: GLADE-MRI-MRI-CGCM3-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MRI/MRI-CGCM3\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MRI\n",
"\n",
" MRI-MRI-ESM1-output2:\n",
" locations:\n",
" - name: GLADE-MRI-MRI-ESM1-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/MRI/MRI-ESM1\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: MRI\n",
"\n",
" NASA-GISS-GISS-E2-H-output2:\n",
" locations:\n",
" - name: GLADE-NASA-GISS-GISS-E2-H-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NASA-GISS/GISS-E2-H\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NASA-GISS\n",
"\n",
" NASA-GISS-GISS-E2-R-output2:\n",
" locations:\n",
" - name: GLADE-NASA-GISS-GISS-E2-R-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NASA-GISS/GISS-E2-R\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NASA-GISS\n",
"\n",
" NCAR-CCSM4-output2:\n",
" locations:\n",
" - name: GLADE-NCAR-CCSM4-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NCAR/CCSM4\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NCAR\n",
"\n",
" NCC-NorESM1-M-output2:\n",
" locations:\n",
" - name: GLADE-NCC-NorESM1-M-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NCC/NorESM1-M\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NCC\n",
"\n",
" NCC-NorESM1-ME-output2:\n",
" locations:\n",
" - name: GLADE-NCC-NorESM1-ME-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NCC/NorESM1-ME\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NCC\n",
"\n",
" NSF-DOE-NCAR-CESM1-BGC-output2:\n",
" locations:\n",
" - name: GLADE-NSF-DOE-NCAR-CESM1-BGC-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-BGC\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NSF-DOE-NCAR\n",
"\n",
" NSF-DOE-NCAR-CESM1-CAM5-output2:\n",
" locations:\n",
" - name: GLADE-NSF-DOE-NCAR-CESM1-CAM5-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-CAM5\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NSF-DOE-NCAR\n",
"\n",
" NSF-DOE-NCAR-CESM1-FASTCHEM-output2:\n",
" locations:\n",
" - name: GLADE-NSF-DOE-NCAR-CESM1-FASTCHEM-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-FASTCHEM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NSF-DOE-NCAR\n",
"\n",
" NSF-DOE-NCAR-CESM1-WACCM-output2:\n",
" locations:\n",
" - name: GLADE-NSF-DOE-NCAR-CESM1-WACCM-output2\n",
" loc_type: posix\n",
" direct_access: True \n",
" urlpath: /glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-WACCM\n",
" exclude_dirs: ['*/files/*', '*/latest/*']\n",
" file_extension: .nc\n",
"\n",
" extra_attributes:\n",
" product: output2\n",
" activity: CMIP5\n",
" institute: NSF-DOE-NCAR\n",
"\n",
"\n"
]
}
],
"source": [
"data = generator(\"cmip5-input.yaml\", \"cmip5-template.yaml\")\n",
"print(data)"
]
},
{
"cell_type": "markdown",
"metadata": {},
"source": [
"**Save the rendered template to a yaml file**"
]
},
{
"cell_type": "code",
"execution_count": 15,
"metadata": {},
"outputs": [
{
"data": {
"text/plain": [
"{'name': 'GLADE-CMIP5',\n",
" 'collection_type': 'cmip5',\n",
" 'data_sources': {'CCCma-CanCM4-output': {'locations': [{'name': 'GLADE-CCCma-CanCM4-output',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output/CCCma/CanCM4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CCCma'}},\n",
" 'CCCma-CanESM2-output': {'locations': [{'name': 'GLADE-CCCma-CanESM2-output',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output/CCCma/CanESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CCCma'}},\n",
" 'BCC-bcc-csm1-1-output1': {'locations': [{'name': 'GLADE-BCC-bcc-csm1-1-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'BCC'}},\n",
" 'BCC-bcc-csm1-1-m-output1': {'locations': [{'name': 'GLADE-BCC-bcc-csm1-1-m-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1-m',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'BCC'}},\n",
" 'BNU-BNU-ESM-output1': {'locations': [{'name': 'GLADE-BNU-BNU-ESM-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/BNU/BNU-ESM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'BNU'}},\n",
" 'CCCma-CanCM4-output1': {'locations': [{'name': 'GLADE-CCCma-CanCM4-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CCCma/CanCM4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CCCma'}},\n",
" 'CCCma-CanESM2-output1': {'locations': [{'name': 'GLADE-CCCma-CanESM2-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CCCma/CanESM2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CCCma'}},\n",
" 'CMCC-CMCC-CESM-output1': {'locations': [{'name': 'GLADE-CMCC-CMCC-CESM-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CMCC/CMCC-CESM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CMCC'}},\n",
" 'CMCC-CMCC-CM-output1': {'locations': [{'name': 'GLADE-CMCC-CMCC-CM-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CMCC/CMCC-CM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CMCC'}},\n",
" 'CMCC-CMCC-CMS-output1': {'locations': [{'name': 'GLADE-CMCC-CMCC-CMS-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CMCC/CMCC-CMS',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CMCC'}},\n",
" 'CNRM-CERFACS-CNRM-CM5-output1': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-CM5-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CNRM-CERFACS'}},\n",
" 'CNRM-CERFACS-CNRM-CM5-2-output1': {'locations': [{'name': 'GLADE-CNRM-CERFACS-CNRM-CM5-2-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5-2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CNRM-CERFACS'}},\n",
" 'CSIRO-BOM-ACCESS1-0-output1': {'locations': [{'name': 'GLADE-CSIRO-BOM-ACCESS1-0-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CSIRO-BOM'}},\n",
" 'CSIRO-BOM-ACCESS1-3-output1': {'locations': [{'name': 'GLADE-CSIRO-BOM-ACCESS1-3-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-3',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CSIRO-BOM'}},\n",
" 'CSIRO-BOM-ACCESS1-output1': {'locations': [{'name': 'GLADE-CSIRO-BOM-ACCESS1-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CSIRO-BOM'}},\n",
" 'CSIRO-QCCCE-CSIRO-Mk3-6-0-output1': {'locations': [{'name': 'GLADE-CSIRO-QCCCE-CSIRO-Mk3-6-0-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/CSIRO-QCCCE/CSIRO-Mk3-6-0',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'CSIRO-QCCCE'}},\n",
" 'FIO-FIO-ESM-output1': {'locations': [{'name': 'GLADE-FIO-FIO-ESM-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/FIO/FIO-ESM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'FIO'}},\n",
" 'FIO-fio-esm-output1': {'locations': [{'name': 'GLADE-FIO-fio-esm-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/FIO/fio-esm',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'FIO'}},\n",
" 'ICHEC-EC-EARTH-output1': {'locations': [{'name': 'GLADE-ICHEC-EC-EARTH-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/ICHEC/EC-EARTH',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'ICHEC'}},\n",
" 'INM-inmcm4-output1': {'locations': [{'name': 'GLADE-INM-inmcm4-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/INM/inmcm4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'INM'}},\n",
" 'INPE-HadGEM2-ES-output1': {'locations': [{'name': 'GLADE-INPE-HadGEM2-ES-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/INPE/HadGEM2-ES',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'INPE'}},\n",
" 'IPSL-IPSL-CM5A-LR-output1': {'locations': [{'name': 'GLADE-IPSL-IPSL-CM5A-LR-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'IPSL'}},\n",
" 'IPSL-IPSL-CM5A-MR-output1': {'locations': [{'name': 'GLADE-IPSL-IPSL-CM5A-MR-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5A-MR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'IPSL'}},\n",
" 'IPSL-IPSL-CM5B-LR-output1': {'locations': [{'name': 'GLADE-IPSL-IPSL-CM5B-LR-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/IPSL/IPSL-CM5B-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'IPSL'}},\n",
" 'LASG-CESS-FGOALS-g2-output1': {'locations': [{'name': 'GLADE-LASG-CESS-FGOALS-g2-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/LASG-CESS/FGOALS-g2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'LASG-CESS'}},\n",
" 'LASG-IAP-FGOALS-s2-output1': {'locations': [{'name': 'GLADE-LASG-IAP-FGOALS-s2-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output1/LASG-IAP/FGOALS-s2',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output1',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'LASG-IAP'}},\n",
" 'MIROC-MIROC-ESM-output1': {'locations': [{'name': 'GLADE-MIROC-MIROC-ESM-output1',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
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" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/MOHC/HadCM3',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'MOHC'}},\n",
" 'MOHC-HadGEM2-ES-output2': {'locations': [{'name': 'GLADE-MOHC-HadGEM2-ES-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/MOHC/HadGEM2-ES',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'MOHC'}},\n",
" 'MPI-M-MPI-ESM-LR-output2': {'locations': [{'name': 'GLADE-MPI-M-MPI-ESM-LR-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/MPI-M/MPI-ESM-LR',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'MPI-M'}},\n",
" 'MRI-MRI-CGCM3-output2': {'locations': [{'name': 'GLADE-MRI-MRI-CGCM3-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/MRI/MRI-CGCM3',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'MRI'}},\n",
" 'MRI-MRI-ESM1-output2': {'locations': [{'name': 'GLADE-MRI-MRI-ESM1-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/MRI/MRI-ESM1',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'MRI'}},\n",
" 'NASA-GISS-GISS-E2-H-output2': {'locations': [{'name': 'GLADE-NASA-GISS-GISS-E2-H-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NASA-GISS/GISS-E2-H',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NASA-GISS'}},\n",
" 'NASA-GISS-GISS-E2-R-output2': {'locations': [{'name': 'GLADE-NASA-GISS-GISS-E2-R-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NASA-GISS/GISS-E2-R',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NASA-GISS'}},\n",
" 'NCAR-CCSM4-output2': {'locations': [{'name': 'GLADE-NCAR-CCSM4-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NCAR/CCSM4',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NCAR'}},\n",
" 'NCC-NorESM1-M-output2': {'locations': [{'name': 'GLADE-NCC-NorESM1-M-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NCC/NorESM1-M',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NCC'}},\n",
" 'NCC-NorESM1-ME-output2': {'locations': [{'name': 'GLADE-NCC-NorESM1-ME-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NCC/NorESM1-ME',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NCC'}},\n",
" 'NSF-DOE-NCAR-CESM1-BGC-output2': {'locations': [{'name': 'GLADE-NSF-DOE-NCAR-CESM1-BGC-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-BGC',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NSF-DOE-NCAR'}},\n",
" 'NSF-DOE-NCAR-CESM1-CAM5-output2': {'locations': [{'name': 'GLADE-NSF-DOE-NCAR-CESM1-CAM5-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-CAM5',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NSF-DOE-NCAR'}},\n",
" 'NSF-DOE-NCAR-CESM1-FASTCHEM-output2': {'locations': [{'name': 'GLADE-NSF-DOE-NCAR-CESM1-FASTCHEM-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-FASTCHEM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NSF-DOE-NCAR'}},\n",
" 'NSF-DOE-NCAR-CESM1-WACCM-output2': {'locations': [{'name': 'GLADE-NSF-DOE-NCAR-CESM1-WACCM-output2',\n",
" 'loc_type': 'posix',\n",
" 'direct_access': True,\n",
" 'urlpath': '/glade/collections/cmip/cmip5/output2/NSF-DOE-NCAR/CESM1-WACCM',\n",
" 'exclude_dirs': ['*/files/*', '*/latest/*'],\n",
" 'file_extension': '.nc'}],\n",
" 'extra_attributes': {'product': 'output2',\n",
" 'activity': 'CMIP5',\n",
" 'institute': 'NSF-DOE-NCAR'}}}}"
]
},
"execution_count": 15,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"with open('glade-cmip5-collection.yml', 'w') as outfile:\n",
" outfile.write(data)\n",
" \n",
"yaml_load(open('glade-cmip5-collection.yml'))"
]
},
{
"cell_type": "code",
"execution_count": 16,
"metadata": {},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"yaml 5.1\n",
"last updated: 2019-08-09 \n",
"\n",
"CPython 3.7.3\n",
"IPython 7.6.1\n",
"\n",
"compiler : GCC 7.3.0\n",
"system : Linux\n",
"release : 3.10.0-693.21.1.el7.x86_64\n",
"machine : x86_64\n",
"processor : x86_64\n",
"CPU cores : 72\n",
"interpreter: 64bit\n",
"host name : casper13\n",
"Git hash : 5e21b961b11b0940f7313e3cf70dbb997e1b37df\n"
]
}
],
"source": [
"%load_ext watermark\n",
"%watermark --iversion -g -m -v -u -d -h"
]
},
{
"cell_type": "code",
"execution_count": null,
"metadata": {},
"outputs": [],
"source": []
}
],
"metadata": {
"kernelspec": {
"display_name": "Python [conda env:analysis]",
"language": "python",
"name": "conda-env-analysis-py"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.7.3"
}
},
"nbformat": 4,
"nbformat_minor": 4
}
collection_name: GLADE-CMIP5
collection_type: cmip5
products:
output:
CCCma:
- CanCM4
- CanESM2
output1:
BCC:
- bcc-csm1-1
- bcc-csm1-1-m
BNU:
- BNU-ESM
CCCma:
- CanCM4
- CanESM2
CMCC:
- CMCC-CESM
- CMCC-CM
- CMCC-CMS
CNRM-CERFACS:
- CNRM-CM5
- CNRM-CM5-2
CSIRO-BOM:
- ACCESS1-0
- ACCESS1-3
- ACCESS1
CSIRO-QCCCE:
- CSIRO-Mk3-6-0
FIO:
- FIO-ESM
- fio-esm
ICHEC:
- EC-EARTH
INM:
- inmcm4
INPE:
- HadGEM2-ES
IPSL:
- IPSL-CM5A-LR
- IPSL-CM5A-MR
- IPSL-CM5B-LR
LASG-CESS:
- FGOALS-g2
LASG-IAP:
- FGOALS-s2
MIROC:
- MIROC-ESM
- MIROC-ESM-CHEM
- MIROC4h
- MIROC5
MOHC:
- HadCM3
- HadGEM2-A
- HadGEM2-CC
- HadGEM2-ES
MPI-M:
- MPI-ESM-LR
- MPI-ESM-MR
- MPI-ESM-P
MRI:
- MRI-AGCM3-2H
- MRI-AGCM3-2S
- MRI-CGCM3
- MRI-ESM1
NASA-GISS:
- GISS-E2-H
- GISS-E2-H-CC
- GISS-E2-R
- GISS-E2-R-CC
NCAR:
- CCSM4
NCC:
- NorESM1-M
- NorESM1-ME
NIMR-KMA:
- HadGEM2-AO
NOAA-GFDL:
- GFDL-CM2p1
- GFDL-CM3
- GFDL-ESM2G
- GFDL-ESM2M
NSF-DOE-NCAR:
- CESM1-BGC
- CESM1-CAM5
- CESM1-FASTCHEM
- CESM1-WACCM
UNSW:
- CSIRO-Mk3L-1-2
output2:
CMCC:
- CMCC-CESM
- CMCC-CMS
ICHEC:
- EC-EARTH
INM:
- inmcm4
INPE:
- HadGEM2-ES
IPSL:
- IPSL-CM5A-LR
- IPSL-CM5A-MR
- IPSL-CM5B-LR
MIROC:
- MIROC-ESM
- MIROC4h
- MIROC5
MOHC:
- HadCM3
- HadGEM2-ES
MPI-M:
- MPI-ESM-LR
MRI:
- MRI-CGCM3
- MRI-ESM1
NASA-GISS:
- GISS-E2-H
- GISS-E2-R
NCAR:
- CCSM4
NCC:
- NorESM1-M
- NorESM1-ME
NSF-DOE-NCAR:
- CESM1-BGC
- CESM1-CAM5
- CESM1-FASTCHEM
- CESM1-WACCM
root_dir: /glade/collections/cmip/cmip5
name: {{ collection_name }}
collection_type: {{ collection_type }}
data_sources:
{% for product_id, product_vals in products.items() %}
{% for institute, institute_vals in product_vals.items() %}
{% for model in institute_vals %}
{{ institute }}-{{ model }}-{{ product_id }}:
locations:
- name: GLADE-{{ institute }}-{{ model }}-{{ product_id }}
loc_type: posix
direct_access: True
urlpath: {{ root_dir }}/{{ product_id }}/{{ institute }}/{{ model }}
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: {{ product_id }}
activity: CMIP5
institute: {{ institute }}
{% endfor %}
{% endfor %}
{% endfor %}
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activities:
AerChemMIP:
NCAR:
- CESM2-WACCM
CFMIP:
NCAR:
- CESM2
CMIP:
AWI:
- AWI-CM-1-1-MR
BCC:
- BCC-CSM2-MR
- BCC-ESM1
CAMS:
- CAMS-CSM1-0
CAS:
- FGOALS-f3-L
CCCma:
- CanESM5
CNRM-CERFACS:
- CNRM-CM6-1
- CNRM-ESM2-1
E3SM-Project:
- E3SM-1-0
EC-Earth-Consortium:
- EC-Earth3
- EC-Earth3-LR
- EC-Earth3-Veg
IPSL:
- IPSL-CM6A-LR
MIROC:
- MIROC6
MOHC:
- HadGEM3-GC31-LL
- UKESM1-0-LL
MRI:
- MRI-ESM2-0
NASA-GISS:
- GISS-E2-1-G
- GISS-E2-1-H
NCAR:
- CESM2
- CESM2-WACCM
NOAA-GFDL:
- GFDL-AM4
- GFDL-CM4
SNU:
- SAM0-UNICON
LS3MIP:
NCAR:
- CESM2
LUMIP:
NCAR:
- CESM2
PAMIP:
NCAR:
- CESM2
ScenarioMIP:
BCC:
- BCC-CSM2-MR
CCCma:
- CanESM5
CNRM-CERFACS:
- CNRM-CM6-1
- CNRM-ESM2-1
IPSL:
- IPSL-CM6A-LR
MOHC:
- UKESM1-0-LL
MRI:
- MRI-ESM2-0
collection_name: GLADE-CMIP6
collection_type: cmip6
root_dir: /glade/collections/cmip/CMIP6
name: {{ collection_name }}
collection_type: {{ collection_type }}
data_sources:
{% for activity_id, activity_vals in activities.items() %}
{% for institution_id, institute_vals in activity_vals.items() %}
{% for model in institute_vals %}
{{ institution_id }}-{{ model }}-{{ activity_id }}:
locations:
- name: GLADE-{{ institution_id }}-{{ model }}-{{ activity_id }}
loc_type: posix
direct_access: True
urlpath: {{ root_dir }}/{{ activity_id }}/{{ institution_id }}/{{ model }}
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
mip_era: CMIP6
activity_id: {{ activity_id }}
institution_id: {{ institution_id }}
{% endfor %}
{% endfor %}
{% endfor %}
name: GLADE-CMIP5
collection_type: cmip5
data_sources:
CCCma-CanCM4-output:
locations:
- name: GLADE-CCCma-CanCM4-output
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanCM4
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output
activity: CMIP5
institute: CCCma
CCCma-CanESM2-output:
locations:
- name: GLADE-CCCma-CanESM2-output
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output/CCCma/CanESM2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output
activity: CMIP5
institute: CCCma
BCC-bcc-csm1-1-output1:
locations:
- name: GLADE-BCC-bcc-csm1-1-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BCC
BCC-bcc-csm1-1-m-output1:
locations:
- name: GLADE-BCC-bcc-csm1-1-m-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BCC/bcc-csm1-1-m
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BCC
BNU-BNU-ESM-output1:
locations:
- name: GLADE-BNU-BNU-ESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/BNU/BNU-ESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: BNU
CCCma-CanCM4-output1:
locations:
- name: GLADE-CCCma-CanCM4-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanCM4
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CCCma
CCCma-CanESM2-output1:
locations:
- name: GLADE-CCCma-CanESM2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CCCma/CanESM2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CCCma
CMCC-CMCC-CESM-output1:
locations:
- name: GLADE-CMCC-CMCC-CESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CMCC-CMCC-CM-output1:
locations:
- name: GLADE-CMCC-CMCC-CM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CMCC-CMCC-CMS-output1:
locations:
- name: GLADE-CMCC-CMCC-CMS-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CMCC/CMCC-CMS
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CMCC
CNRM-CERFACS-CNRM-CM5-output1:
locations:
- name: GLADE-CNRM-CERFACS-CNRM-CM5-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CNRM-CERFACS
CNRM-CERFACS-CNRM-CM5-2-output1:
locations:
- name: GLADE-CNRM-CERFACS-CNRM-CM5-2-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CNRM-CERFACS/CNRM-CM5-2
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CNRM-CERFACS
CSIRO-BOM-ACCESS1-0-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-0-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-0
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-BOM-ACCESS1-3-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-3-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1-3
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-BOM-ACCESS1-output1:
locations:
- name: GLADE-CSIRO-BOM-ACCESS1-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-BOM/ACCESS1
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-BOM
CSIRO-QCCCE-CSIRO-Mk3-6-0-output1:
locations:
- name: GLADE-CSIRO-QCCCE-CSIRO-Mk3-6-0-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/CSIRO-QCCCE/CSIRO-Mk3-6-0
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: CSIRO-QCCCE
FIO-FIO-ESM-output1:
locations:
- name: GLADE-FIO-FIO-ESM-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/FIO/FIO-ESM
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: FIO
FIO-fio-esm-output1:
locations:
- name: GLADE-FIO-fio-esm-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/FIO/fio-esm
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
product: output1
activity: CMIP5
institute: FIO
ICHEC-EC-EARTH-output1:
locations:
- name: GLADE-ICHEC-EC-EARTH-output1
loc_type: posix
direct_access: True
urlpath: /glade/collections/cmip/cmip5/output1/ICHEC/EC-EARTH
exclude_dirs: ['*/files/*', '*/latest/*']
file_extension: .nc
extra_attributes:
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