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October 24, 2013 02:31
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| Script started on Thu Oct 24 13:03:14 2013 | |
| -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= | |
| PyTables version: 3.1.0dev | |
| HDF5 version: 1.8.12-pre1 | |
| NumPy version: 1.7.1 | |
| Numexpr version: 2.2.2 (not using Intel's VML/MKL) | |
| Zlib version: 1.2.5 (in Python interpreter) | |
| BZIP2 version: 1.0.6 (6-Sept-2010) | |
| Blosc version: 1.2.3 (2013-05-17) | |
| Cython version: 0.19.2 | |
| Python version: 2.7.5 (default, Oct 23 2013, 16:21:58) | |
| [GCC 4.2.1 Compatible Apple LLVM 5.0 (clang-500.2.79)] | |
| Platform: Darwin-13.0.0-x86_64-i386-64bit | |
| Byte-ordering: little | |
| Detected cores: 2 | |
| Default encoding: ascii | |
| Default locale: (en_AU, UTF-8) | |
| -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= | |
| Performing only a light (yet comprehensive) subset of the test suite. | |
| If you want a more complete test, try passing the --heavy flag to this script | |
| (or set the 'heavy' parameter in case you are using tables.test() call). | |
| The whole suite will take more than 4 hours to complete on a relatively | |
| modern CPU and around 512 MB of main memory. | |
| -=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-= | |
| /Users/andreabedini/Development/PyTables/tables/filters.py:241: FiltersWarning: compression library ``lzo`` is not available; using ``zlib`` instead | |
| % (complib, default_complib), FiltersWarning) | |
| 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| |
| ====================================================================== | |
| ERROR: None (tables.tests.test_basics.CheckFileTestCase) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_basics.py", line 1644, in test04_openGenericHDF5File | |
| ui = fileh.get_node(columns, "pressure", classname="Array") | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1370, in get_node | |
| node = self._get_node(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/columns/pressure`` under ``/`` | |
| ====================================================================== | |
| ERROR: None (tables.tests.test_basics.CheckFileTestCase) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_basics.py", line 1668, in test04b_UnImplementedOnLoading | |
| UserWarning, h5file.get_node, '/CompoundChunked') | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 269, in failUnlessWarns | |
| ret = callableObj(*args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1370, in get_node | |
| node = self._get_node(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 336, in H5O_dtype_decode_helper | |
| unable to decode member type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/CompoundChunked`` under ``/`` | |
| ====================================================================== | |
| ERROR: None (tables.tests.test_basics.CheckFileTestCase) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_basics.py", line 1691, in test05_copyUnimplemented | |
| UserWarning, fileh.get_node, '/CompoundChunked') | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 269, in failUnlessWarns | |
| ret = callableObj(*args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1370, in get_node | |
| node = self._get_node(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 336, in H5O_dtype_decode_helper | |
| unable to decode member type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/CompoundChunked`` under ``/`` | |
| ====================================================================== | |
| ERROR: test00_table (tables.tests.test_backcompat.TimeTestCase) | |
| Checking backward compatibility with old TimeXX types (tables). | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_backcompat.py", line 143, in test00_table | |
| table = self.fileh.root.table | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 813, in __getattr__ | |
| return self._f_get_child(name) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 686, in _f_get_child | |
| return self._v_file._get_node(childPath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 336, in H5O_dtype_decode_helper | |
| unable to decode member type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/table`` under ``/`` | |
| ====================================================================== | |
| ERROR: test01_vlarray (tables.tests.test_backcompat.TimeTestCase) | |
| Checking backward compatibility with old TimeXX types (vlarrays). | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_backcompat.py", line 150, in test01_vlarray | |
| vlarray4 = self.fileh.root.vlarray4 | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 813, in __getattr__ | |
| return self._f_get_child(name) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 686, in _f_get_child | |
| return self._v_file._get_node(childPath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 501, in H5O_dtype_decode_helper | |
| unable to decode VL parent type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/vlarray4`` under ``/`` | |
| ====================================================================== | |
| ERROR: test (tables.tests.test_hdf5compat.ContiguousCompoundTestCase) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_hdf5compat.py", line 48, in test | |
| self._test() | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_hdf5compat.py", line 212, in _test | |
| self.assertTrue('/test_var/structure variable' in self.h5file) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1788, in __contains__ | |
| self.get_node(path) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1370, in get_node | |
| node = self._get_node(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 336, in H5O_dtype_decode_helper | |
| unable to decode member type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/test_var/structure variable`` under ``/`` | |
| ====================================================================== | |
| ERROR: test (tables.tests.test_hdf5compat.ContiguousCompoundAppendTestCase) | |
| ---------------------------------------------------------------------- | |
| Traceback (most recent call last): | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/common.py", line 143, in newmethod | |
| return oldmethod(self, *args, **kwargs) | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_hdf5compat.py", line 48, in test | |
| self._test() | |
| File "/Users/andreabedini/Development/PyTables/tables/tests/test_hdf5compat.py", line 252, in _test | |
| self.assertTrue('/test_var/structure variable' in self.h5file) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1788, in __contains__ | |
| self.get_node(path) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1370, in get_node | |
| node = self._get_node(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/file.py", line 1311, in _get_node | |
| node = self.root._g_load_child(nodePath) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 1189, in _g_load_child | |
| ChildClass = self._g_get_child_leaf_class(childname, warn=True) | |
| File "/Users/andreabedini/Development/PyTables/tables/group.py", line 320, in _g_get_child_leaf_class | |
| childCID = self._g_get_lchild_attr(childname, 'CLASS') | |
| File "hdf5extension.pyx", line 1021, in tables.hdf5extension.Group._g_get_lchild_attr (tables/hdf5extension.c:9377) | |
| HDF5ExtError: HDF5 error back trace | |
| File "H5D.c", line 345, in H5Dopen2 | |
| can't open dataset | |
| File "H5Dint.c", line 1142, in H5D_open | |
| not found | |
| File "H5Dint.c", line 1232, in H5D__open_oid | |
| unable to load type info from dataset header | |
| File "H5Omessage.c", line 484, in H5O_msg_read | |
| unable to read object header message | |
| File "H5Omessage.c", line 545, in H5O_msg_read_oh | |
| unable to decode message | |
| File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode | |
| unable to decode native message | |
| File "H5Odtype.c", line 1109, in H5O_dtype_decode | |
| can't decode type | |
| File "H5Odtype.c", line 336, in H5O_dtype_decode_helper | |
| unable to decode member type | |
| File "H5Odtype.c", line 550, in H5O_dtype_decode_helper | |
| incorrect array datatype version | |
| End of HDF5 error back trace | |
| Non-existing node ``/test_var/structure variable`` under ``/`` | |
| ---------------------------------------------------------------------- | |
| Ran 5424 tests in 495.953s | |
| FAILED (errors=7) | |
| [?1034hClosing remaining open files: /Users/andreabedini/Development/PyTables/tables/tests/ex-noattr.h5... done /Users/andreabedini/Development/PyTables/tables/tests/smpl_unsupptype.h5... done | |
| Script done on Thu Oct 24 13:11:31 2013 |
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