Tools that visualize protein sequence annotations. Some of these can map from genome to 3D.

genomeTo3D.md

Name	URL	Maps Genomic Positions	Description	Citation
MuPIT	http://mupit.icm.jhu.edu	yes	Webserver for mapping variant positions to annotated, interactive 3D structures	Niknafs et al., (2013) Hum Genet. 10.1007/s00439-013-1325-0
AMASS	http://amass-db.org	no	Maps 1D sequence annotation databases to 3D protein structures	Mielke et al., (2014) Bioinformatics 10.1093/bioinformatics/btu073
Structure-PPi	http://structureppi.bioinfo.cnio.es/Structure	yes	Annotation of cancer-related single-nucleotide variants at protein-protein interfaces	Vázquez et al., (2015) Bioinformatics [10.1093/bioinformatics/btv142](http://dx.doi.org/doi: 10.1093/bioinformatics/btv142)
ProViz	http://proviz.ucd.ie/	no	Visualizes protein sequence annotations and multiple sequence alignment.	Jehl et al., (2016) Nucl. Acids Res. 10.1093/nar/gkw265
ProSat	http://prosat.h-its.org/	no	Map protein sequence features on 3D structure	Stank et al, (2016) Protein Engineering and Design Selection 10.1093/protein/gzw021
Protael	http://protael.org	no	Visualize protein sequences and related data	Sedova et al, (2016) Bioinformatics 10.1093/bioinformatics/btv605