View ADAM_stats_01_PB
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#Pacotes do repositório CRAN | |
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install.packages(c("Rcpp","pbapply","dplyr","BiocManager","DT","stringr","knitr")) | |
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#Pacotes do repositório Bioconductor | |
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BiocManager::install("GO.db","KEGGREST","SummarizedExperiment") |
View ADAM_stats_01_EN
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#Packages from CRAN repository | |
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install.packages(c("Rcpp","pbapply","dplyr","BiocManager","DT","stringr","knitr")) | |
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#Packages from Bioconductor | |
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BiocManager::install("GO.db","KEGGREST","SummarizedExperiment") |
View ADAM_stats_10
GenesGFAGs <- ResultAnalysis[[1]] | |
Comparison_1 <- ResultAnalysis[[2]][1] | |
Comparison_2 <- ResultAnalysis[[2]][2] | |
write.table(GenesGFAGs, file = "GenesGFAGs.txt", quote = FALSE, sep = "\t", | |
row.names = FALSE, col.names = TRUE) | |
write.table(Comparison_1, file = "Comparison_1.txt", quote = FALSE, sep = "\t", | |
row.names = FALSE, col.names = TRUE) |
View ADAm_stats_09
ResultAnalysis <- GFAGAnalysis(ComparisonID = Comparison, | |
ExpressionData = ExpressionAedes, | |
MinGene = Minimum, | |
MaxGene = Maximum, | |
SeedNumber = SeedBootstrap, | |
BootstrapNumber = StepsBootstrap, | |
PCorrection = CutoffValue, | |
DBSpecies = KeggPathwaysAedes, | |
PCorrectionMethod = MethodCorrection, | |
WilcoxonTest = Wilcoxon, |
View ADAM_stats_08
Wilcoxon <- TRUE | |
Fisher <- TRUE |
View ADAM_stats_07
Domain <- "own" | |
Nomenclature <- "gene" |
View ADAM_stats_06
data("KeggPathwaysAedes") | |
head(KeggPathwaysAedes) |
View ADAM_stats_05
CutoffValue <- 0.05 | |
MethodCorrection <- "fdr" |
View ADAM_stats_04
SeedBootstrap <- 1049 | |
StepsBootstrap <- 10000L |
View ADAM_stats_03
Minimum <- 3L | |
Maximum <- 20L |
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