andrewcstewart

{% macro create_f_parse_ua_string() %}
CREATE OR REPLACE FUNCTION utils.parse_ua_string(ua_string varchar)
    RETURNS VARIANT
    LANGUAGE JAVASCRIPT
    AS $$
/*!
 * UAParser.js v0.7.20
 * Lightweight JavaScript-based User-Agent string parser
 * https://github.com/faisalman/ua-parser-js
 *

andrewcstewart

FROM centos

RUN yum install -y tar wget postgresql-devel
RUN wget http://bin.begriffs.com/dbapi/heroku/postgrest-0.2.8.0.tar.xz
RUN tar --xz -xvf postgrest-0.2.8.0.tar.xz
RUN mv postgrest-0.2.8.0 /usr/local/bin/postgrest

CMD postgrest  --db-host localhost  --db-port 5432     \
               --db-name my_db      --db-user postgres \
               --db-pass foobar     --db-pool 200      \

andrewcstewart

# Paste URLs and other text here for easier copying

http://cloud1.galaxyproject.org/

andrewcstewart

import sys
from Bio import SearchIO

# usage: parse_blast_hits.py inputfile > outputfile

file = sys.argv[1]

for qresult in SearchIO.parse(file, 'blast-text'):
  print("%s" % (qresult.id))

andrewcstewart

#!/usr/bin/perl -w

while(<>) {
  chomp($_);
  my @o = split("",$_);
  print join(',',@o) . "\n";
}

andrewcstewart

In [26]: pid = client.getNextPID(u'foo')
---------------------------------------------------------------------------
AttributeError                            Traceback (most recent call last)
<ipython-input-26-9c5d45fed03c> in <module>()
----> 1 pid = client.getNextPID(u'foo')

/Library/Python/2.7/site-packages/fcrepo/client.pyc in getNextPID(self, namespace, numPIDs, format)
     19
     20     def getNextPID(self, namespace, numPIDs=1, format=u'text/xml'):
---> 21         request = self.api.getNextPID()

andrewcstewart

# -*- mode: ruby -*-
# vi: set ft=ruby :
require 'yaml'

Vagrant.configure("2") do |config|
  # All Vagrant configuration is done here. The most common configuration
  # options are documented and commented below. For a complete reference,
  # please see the online documentation at vagrantup.com.

  # Every Vagrant virtual environment requires a box to build off of.

andrewcstewart

#!/usr/bin/perl -w
for ($job in @ARGV) {
  system "qsub $job";
}

andrewcstewart

/bin/sh: raxmlHPC-PTHREADS-SSE3: command not found
Return error code 127 from command:
['raxmlHPC-PTHREADS-SSE3', '-T 4', '-s /home/galaxy/galaxy-dist/database/files/000/dataset_76.dat', '-n galaxy', '-m GTRGAMMA', '-p 1234567890']

andrewcstewart

import B as b

b.D()