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conda build of py-arrow with CUDA support
Raw
Output of run_conda.sh
./run_conda.sh: 1: ./run_conda.sh: conda: not found
./run_conda.sh: 2: ./run_conda.sh: conda: not found
./run_conda.sh: 3: ./run_conda.sh: conda: not found
fatal: destination path 'arrow' already exists and is not an empty directory.
./run_conda.sh: 12: ./run_conda.sh: conda: not found
-- Building using CMake version: 3.5.1
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 0.13.0 (full: '0.13.0-SNAPSHOT')
-- clang-tidy not found
-- clang-format found at
-- infer not found
-- Found cpplint executable at /usr/local/bin/cpplint
-- Compiler command: env LANG=C /usr/bin/c++ -v
-- Compiler version: Using built-in specs.
COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.11' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11)
-- Compiler id: GNU
Selected compiler gcc 5.4.0
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- BOOST_VERSION: 1.67.0
-- BROTLI_VERSION: v0.6.0
-- CARES_VERSION: 1.15.0
-- DOUBLE_CONVERSION_VERSION: v3.1.1
-- FLATBUFFERS_VERSION: v1.10.0
-- GBENCHMARK_VERSION: v1.4.1
-- GFLAGS_VERSION: v2.2.0
-- GLOG_VERSION: v0.3.5
-- GRPC_VERSION: v1.18.0
-- GTEST_VERSION: 1.8.0
-- JEMALLOC_VERSION: 17c897976c60b0e6e4f4a365c751027244dada7a
-- LZ4_VERSION: v1.8.3
-- ORC_VERSION: 1.5.4
-- PROTOBUF_VERSION: v3.6.1
-- RAPIDJSON_VERSION: v1.1.0
-- RE2_VERSION: 2018-10-01
-- SNAPPY_VERSION: 1.1.3
-- THRIFT_VERSION: 0.11.0
-- ZLIB_VERSION: 1.2.8
-- ZSTD_VERSION: v1.3.7
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- regex
-- system
-- filesystem
-- Boost include dir: /usr/include
-- Boost libraries: /home/ubuntu/anaconda3/lib/libboost_regex.so/home/ubuntu/anaconda3/lib/libboost_system.so/home/ubuntu/anaconda3/lib/libboost_filesystem.so
Added shared library dependency boost_system_shared: /home/ubuntu/anaconda3/lib/libboost_system.so
Added shared library dependency boost_filesystem_shared: /home/ubuntu/anaconda3/lib/libboost_filesystem.so
Added shared library dependency boost_regex_shared: /home/ubuntu/anaconda3/lib/libboost_regex.so
Added static library dependency double-conversion_static: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- double-conversion include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/include
-- double-conversion static library: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- RapidJSON include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/rapidjson_ep/src/rapidjson_ep-install/include
-- Flatbuffers include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/include
-- Flatbuffers compiler: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/bin/flatc
Added static library dependency jemalloc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a
Added shared library dependency jemalloc_shared: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc.so
-- Found hdfs.h at: /home/ubuntu/boop/experiments/6/arrow/cpp/thirdparty/hadoop/include/hdfs.h
-- Found the ZLIB shared library: /usr/lib/x86_64-linux-gnu/libz.so
Added shared library dependency zlib_shared: /usr/lib/x86_64-linux-gnu/libz.so
Added static library dependency snappy_static: /home/ubuntu/boop/experiments/6/arrow/cpp/snappy_ep/src/snappy_ep-install/lib/libsnappy.a
Added static library dependency brotli_enc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlienc.a
Added static library dependency brotli_dec_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlidec.a
Added static library dependency brotli_common_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlicommon.a
Added static library dependency lz4_static: /home/ubuntu/boop/experiments/6/arrow/cpp/lz4_ep-prefix/src/lz4_ep/lib/liblz4.a
CMake Error at cmake_modules/ThirdpartyToolchain.cmake:1223 (message):
Building zstd using ExternalProject requires at least CMake 3.7
Call Stack (most recent call first):
CMakeLists.txt:573 (include)
-- Configuring incomplete, errors occurred!
See also "/home/ubuntu/boop/experiments/6/arrow/cpp/CMakeFiles/CMakeOutput.log".
See also "/home/ubuntu/boop/experiments/6/arrow/cpp/CMakeFiles/CMakeError.log".
-- Building using CMake version: 3.13.2
-- Arrow version: 0.13.0 (full: '0.13.0-SNAPSHOT')
-- clang-tidy not found
-- clang-format found at
-- infer not found
-- Found cpplint executable at /usr/local/bin/cpplint
-- Compiler command: env LANG=C /usr/bin/c++ -v
-- Compiler version: Using built-in specs.
COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.11' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11)
-- Compiler id: GNU
Selected compiler gcc 5.4.0
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- BOOST_VERSION: 1.67.0
-- BROTLI_VERSION: v0.6.0
-- CARES_VERSION: 1.15.0
-- DOUBLE_CONVERSION_VERSION: v3.1.1
-- FLATBUFFERS_VERSION: v1.10.0
-- GBENCHMARK_VERSION: v1.4.1
-- GFLAGS_VERSION: v2.2.0
-- GLOG_VERSION: v0.3.5
-- GRPC_VERSION: v1.18.0
-- GTEST_VERSION: 1.8.0
-- JEMALLOC_VERSION: 17c897976c60b0e6e4f4a365c751027244dada7a
-- LZ4_VERSION: v1.8.3
-- ORC_VERSION: 1.5.4
-- PROTOBUF_VERSION: v3.6.1
-- RAPIDJSON_VERSION: v1.1.0
-- RE2_VERSION: 2018-10-01
-- SNAPPY_VERSION: 1.1.3
-- THRIFT_VERSION: 0.11.0
-- ZLIB_VERSION: 1.2.8
-- ZSTD_VERSION: v1.3.7
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- regex
-- system
-- filesystem
-- Boost include dir: /usr/include
-- Boost libraries: /home/ubuntu/anaconda3/lib/libboost_regex.so/home/ubuntu/anaconda3/lib/libboost_system.so/home/ubuntu/anaconda3/lib/libboost_filesystem.so
Added shared library dependency boost_system_shared: /home/ubuntu/anaconda3/lib/libboost_system.so
Added shared library dependency boost_filesystem_shared: /home/ubuntu/anaconda3/lib/libboost_filesystem.so
Added shared library dependency boost_regex_shared: /home/ubuntu/anaconda3/lib/libboost_regex.so
Added static library dependency double-conversion_static: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- double-conversion include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/include
-- double-conversion static library: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- RapidJSON include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/rapidjson_ep/src/rapidjson_ep-install/include
-- Flatbuffers include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/include
-- Flatbuffers compiler: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/bin/flatc
Added static library dependency jemalloc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a
Added shared library dependency jemalloc_shared: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc.so
-- Found hdfs.h at: /home/ubuntu/boop/experiments/6/arrow/cpp/thirdparty/hadoop/include/hdfs.h
-- Found the ZLIB shared library: /usr/lib/x86_64-linux-gnu/libz.so
Added shared library dependency zlib_shared: /usr/lib/x86_64-linux-gnu/libz.so
Added static library dependency snappy_static: /home/ubuntu/boop/experiments/6/arrow/cpp/snappy_ep/src/snappy_ep-install/lib/libsnappy.a
Added static library dependency brotli_enc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlienc.a
Added static library dependency brotli_dec_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlidec.a
Added static library dependency brotli_common_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlicommon.a
Added static library dependency lz4_static: /home/ubuntu/boop/experiments/6/arrow/cpp/lz4_ep-prefix/src/lz4_ep/lib/liblz4.a
Added static library dependency zstd_static: /home/ubuntu/boop/experiments/6/arrow/cpp/zstd_ep-install/lib/libzstd.a
-- GLOG_CMAKE_CXX_FLAGS: -O3 -DNDEBUG -fPIC
-- CMAKE_CXX_FLAGS in glog: -O3 -DNDEBUG -fPIC
-- Glog version: v0.3.5
-- Glog include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/include
-- Glog static library: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/lib/libglog.a
Added static library dependency glog_static: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/lib/libglog.a
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- CMAKE_CXX_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- CUDA Libraries: /usr/local/cuda/lib64/libcudart_static.a;-pthread;dl;/usr/lib/x86_64-linux-gnu/librt.so
-- Searching for Python libs in /home/ubuntu/anaconda3/lib64;/home/ubuntu/anaconda3/lib;/home/ubuntu/anaconda3/lib/python3.7/config-3.7m-x86_64-linux-gnu
-- Looking for python3.7m
-- Found Python lib /home/ubuntu/anaconda3/lib/libpython3.6m.so
-- Configuring done
CMake Warning at cmake_modules/BuildUtils.cmake:167 (add_library):
Cannot generate a safe runtime search path for target arrow_shared because
files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
Call Stack (most recent call first):
src/arrow/CMakeLists.txt:230 (ADD_ARROW_LIB)
CMake Warning at cmake_modules/BuildUtils.cmake:167 (add_library):
Cannot generate a safe runtime search path for target arrow_cuda_shared
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
Call Stack (most recent call first):
src/arrow/gpu/CMakeLists.txt:48 (ADD_ARROW_LIB)
CMake Warning at cmake_modules/BuildUtils.cmake:167 (add_library):
Cannot generate a safe dependent library path for target arrow_cuda_shared
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
Call Stack (most recent call first):
src/arrow/gpu/CMakeLists.txt:48 (ADD_ARROW_LIB)
CMake Warning at src/arrow/ipc/CMakeLists.txt:100 (add_executable):
Cannot generate a safe runtime search path for target arrow-file-to-stream
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
CMake Warning at src/arrow/ipc/CMakeLists.txt:102 (add_executable):
Cannot generate a safe runtime search path for target arrow-stream-to-file
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
CMake Warning at cmake_modules/BuildUtils.cmake:167 (add_library):
Cannot generate a safe runtime search path for target arrow_python_shared
because files in some directories may conflict with libraries in implicit
directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
Call Stack (most recent call first):
src/arrow/python/CMakeLists.txt:71 (ADD_ARROW_LIB)
CMake Warning at cmake_modules/BuildUtils.cmake:167 (add_library):
Cannot generate a safe dependent library path for target
arrow_python_shared because files in some directories may conflict with
libraries in implicit directories:
runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in:
/home/ubuntu/anaconda3/lib
Some of these libraries may not be found correctly.
Call Stack (most recent call first):
src/arrow/python/CMakeLists.txt:71 (ADD_ARROW_LIB)
-- Generating done
-- Build files have been written to: /home/ubuntu/boop/experiments/6/arrow/cpp
[ 4%] Built target jemalloc_ep
[ 5%] Performing configure step for 'double-conversion_ep'
[ 6%] Performing configure step for 'rapidjson_ep'
[ 7%] Performing configure step for 'flatbuffers_ep'
-- rapidjson_ep configure command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/src/rapidjson_ep-stamp/rapidjson_ep-configure-*.log
[ 7%] Performing build step for 'rapidjson_ep'
-- double-conversion_ep configure command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep-prefix/src/double-conversion_ep-stamp/double-conversion_ep-configure-*.log
[ 8%] Performing build step for 'double-conversion_ep'
-- rapidjson_ep build command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/src/rapidjson_ep-stamp/rapidjson_ep-build-*.log
-- flatbuffers_ep configure command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-stamp/flatbuffers_ep-configure-*.log
[ 9%] Performing install step for 'rapidjson_ep'
[ 9%] Performing build step for 'flatbuffers_ep'
-- double-conversion_ep build command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep-prefix/src/double-conversion_ep-stamp/double-conversion_ep-build-*.log
[ 9%] Performing install step for 'double-conversion_ep'
-- rapidjson_ep install command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/src/rapidjson_ep-stamp/rapidjson_ep-install-*.log
[ 9%] Completed 'rapidjson_ep'
[ 11%] Built target rapidjson_ep
-- double-conversion_ep install command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep-prefix/src/double-conversion_ep-stamp/double-conversion_ep-install-*.log
[ 11%] Performing configure step for 'brotli_ep'
[ 12%] Completed 'double-conversion_ep'
-- flatbuffers_ep build command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-stamp/flatbuffers_ep-build-*.log
[ 13%] Performing install step for 'flatbuffers_ep'
[ 15%] Built target double-conversion_ep
[ 20%] Built target glog_ep
[ 25%] Built target snappy_ep
[ 30%] Built target lz4_ep
[ 35%] Built target zstd_ep
-- flatbuffers_ep install command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-stamp/flatbuffers_ep-install-*.log
[ 35%] Completed 'flatbuffers_ep'
-- brotli_ep configure command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-configure-*.log
[ 36%] Performing build step for 'brotli_ep'
[ 38%] Built target flatbuffers_ep
Scanning dependencies of target arrow_python_objlib
[ 39%] Running flatc compiler on /home/ubuntu/boop/experiments/6/arrow/format/Message.fbs;/home/ubuntu/boop/experiments/6/arrow/format/File.fbs;/home/ubuntu/boop/experiments/6/arrow/format/Schema.fbs;/home/ubuntu/boop/experiments/6/arrow/format/Tensor.fbs;/home/ubuntu/boop/experiments/6/arrow/cpp/src/arrow/ipc/feather.fbs
[ 40%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/arrow_to_pandas.cc.o
[ 40%] Built target metadata_fbs
[ 40%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/benchmark.cc.o
-- brotli_ep build command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-build-*.log
[ 40%] Performing install step for 'brotli_ep'
-- brotli_ep install command succeeded. See also /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep-prefix/src/brotli_ep-stamp/brotli_ep-install-*.log
[ 41%] Completed 'brotli_ep'
[ 44%] Built target brotli_ep
[ 45%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/common.cc.o
[ 46%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/config.cc.o
[ 46%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/decimal.cc.o
[ 47%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/deserialize.cc.o
[ 47%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/helpers.cc.o
Scanning dependencies of target arrow_cuda_objlib
[ 47%] Building CXX object src/arrow/gpu/CMakeFiles/arrow_cuda_objlib.dir/cuda_arrow_ipc.cc.o
[ 48%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/inference.cc.o
[ 49%] Building CXX object src/arrow/gpu/CMakeFiles/arrow_cuda_objlib.dir/cuda_context.cc.o
[ 50%] Building CXX object src/arrow/gpu/CMakeFiles/arrow_cuda_objlib.dir/cuda_memory.cc.o
[ 51%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/init.cc.o
[ 51%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/io.cc.o
[ 52%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/numpy_convert.cc.o
[ 52%] Built target arrow_cuda_objlib
[ 52%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/numpy_to_arrow.cc.o
[ 52%] Built target toolchain
[ 53%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/python_to_arrow.cc.o
[ 53%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/pyarrow.cc.o
[ 54%] Linking CXX static library ../../../build/release/libarrow_cuda.a
[ 54%] Built target arrow_cuda_static
[ 55%] Building CXX object src/arrow/python/CMakeFiles/arrow_python_objlib.dir/serialize.cc.o
[ 55%] Built target arrow_dependencies
Scanning dependencies of target arrow_objlib
[ 55%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/util/compression_zstd.cc.o
[ 56%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/util/compression_zlib.cc.o
[ 56%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/util/compression_snappy.cc.o
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[ 81%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/util/decimal.cc.o
[ 81%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/util/int-util.cc.o
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[ 90%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/compute/kernels/util-internal.cc.o
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[ 92%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/ipc/dictionary.cc.o
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[ 94%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/ipc/json-simple.cc.o
[ 95%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/ipc/message.cc.o
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[ 96%] Building CXX object src/arrow/CMakeFiles/arrow_objlib.dir/ipc/writer.cc.o
[ 96%] Built target arrow_objlib
[ 96%] Linking CXX static library ../../build/release/libarrow.a
[ 97%] Linking CXX shared library ../../build/release/libarrow.so
[ 97%] Built target arrow_static
Scanning dependencies of target arrow-file-to-stream
Scanning dependencies of target arrow-stream-to-file
[ 97%] Building CXX object src/arrow/ipc/CMakeFiles/arrow-stream-to-file.dir/stream-to-file.cc.o
[ 97%] Building CXX object src/arrow/ipc/CMakeFiles/arrow-file-to-stream.dir/file-to-stream.cc.o
[ 97%] Built target arrow_shared
[ 97%] Linking CXX shared library ../../../build/release/libarrow_cuda.so
[ 97%] Built target arrow_cuda_shared
[ 98%] Linking CXX shared library ../../../build/release/libarrow_python.so
[ 98%] Built target arrow_python_shared
[ 99%] Linking CXX executable ../../../build/release/arrow-file-to-stream
[100%] Linking CXX executable ../../../build/release/arrow-stream-to-file
[100%] Built target arrow-file-to-stream
[100%] Built target arrow-stream-to-file
[ 5%] Built target double-conversion_ep
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Install the project...
-- Install configuration: "RELEASE"
-- Old export file "/lib/cmake/arrow/arrowTargets.cmake" will be replaced. Removing files [/lib/cmake/arrow/arrowTargets-release.cmake].
-- Installing: /lib/cmake/arrow/arrowTargets.cmake
-- Installing: /lib/cmake/arrow/arrowTargets-release.cmake
-- Up-to-date: /lib/cmake/arrow/arrowConfig.cmake
-- Up-to-date: /lib/cmake/arrow/arrowConfigVersion.cmake
-- Installing: /lib/libarrow.so.13.0.0
-- Up-to-date: /lib/libarrow.so.13
-- Set runtime path of "/lib/libarrow.so.13.0.0" to ""
-- Up-to-date: /lib/libarrow.so
-- Installing: /lib/libarrow.a
-- Up-to-date: /include/arrow/allocator.h
-- Up-to-date: /include/arrow/api.h
-- Up-to-date: /include/arrow/array.h
-- Up-to-date: /include/arrow/buffer-builder.h
-- Up-to-date: /include/arrow/buffer.h
-- Up-to-date: /include/arrow/builder.h
-- Up-to-date: /include/arrow/compare.h
-- Up-to-date: /include/arrow/memory_pool-test.h
-- Up-to-date: /include/arrow/memory_pool.h
-- Up-to-date: /include/arrow/pretty_print.h
-- Up-to-date: /include/arrow/record_batch.h
-- Up-to-date: /include/arrow/sparse_tensor.h
-- Up-to-date: /include/arrow/status.h
-- Up-to-date: /include/arrow/stl.h
-- Up-to-date: /include/arrow/table.h
-- Up-to-date: /include/arrow/table_builder.h
-- Up-to-date: /include/arrow/tensor.h
-- Up-to-date: /include/arrow/type.h
-- Up-to-date: /include/arrow/type_fwd.h
-- Up-to-date: /include/arrow/type_traits.h
-- Up-to-date: /include/arrow/visitor.h
-- Up-to-date: /include/arrow/visitor_inline.h
-- Installing: /lib/pkgconfig/arrow.pc
-- Up-to-date: /include/arrow/compute/api.h
-- Up-to-date: /include/arrow/compute/context.h
-- Up-to-date: /include/arrow/compute/kernel.h
-- Up-to-date: /include/arrow/compute/test-util.h
-- Up-to-date: /lib/pkgconfig/arrow-compute.pc
-- Up-to-date: /include/arrow/compute/kernels/aggregate.h
-- Up-to-date: /include/arrow/compute/kernels/boolean.h
-- Up-to-date: /include/arrow/compute/kernels/cast.h
-- Up-to-date: /include/arrow/compute/kernels/hash.h
-- Up-to-date: /include/arrow/compute/kernels/sum.h
-- Installing: /lib/libarrow_cuda.so.13.0.0
-- Up-to-date: /lib/libarrow_cuda.so.13
-- Set runtime path of "/lib/libarrow_cuda.so.13.0.0" to ""
-- Up-to-date: /lib/libarrow_cuda.so
-- Installing: /lib/libarrow_cuda.a
-- Installing: /include/arrow/gpu/cuda_version.h
-- Up-to-date: /include/arrow/gpu/cuda_api.h
-- Up-to-date: /include/arrow/gpu/cuda_arrow_ipc.h
-- Up-to-date: /include/arrow/gpu/cuda_common.h
-- Up-to-date: /include/arrow/gpu/cuda_context.h
-- Up-to-date: /include/arrow/gpu/cuda_memory.h
-- Up-to-date: /include/arrow/gpu/cuda_version.h
-- Installing: /lib/pkgconfig/arrow-cuda.pc
-- Installing: /include/arrow/ipc/File_generated.h
-- Installing: /include/arrow/ipc/Message_generated.h
-- Installing: /include/arrow/ipc/Schema_generated.h
-- Installing: /include/arrow/ipc/Tensor_generated.h
-- Up-to-date: /include/arrow/ipc/api.h
-- Up-to-date: /include/arrow/ipc/dictionary.h
-- Up-to-date: /include/arrow/ipc/feather.h
-- Installing: /include/arrow/ipc/feather_generated.h
-- Up-to-date: /include/arrow/ipc/json-simple.h
-- Up-to-date: /include/arrow/ipc/json.h
-- Up-to-date: /include/arrow/ipc/message.h
-- Up-to-date: /include/arrow/ipc/reader.h
-- Up-to-date: /include/arrow/ipc/test-common.h
-- Up-to-date: /include/arrow/ipc/util.h
-- Up-to-date: /include/arrow/ipc/writer.h
-- Up-to-date: /include/arrow/array/builder_adaptive.h
-- Up-to-date: /include/arrow/array/builder_base.h
-- Up-to-date: /include/arrow/array/builder_binary.h
-- Up-to-date: /include/arrow/array/builder_decimal.h
-- Up-to-date: /include/arrow/array/builder_dict.h
-- Up-to-date: /include/arrow/array/builder_nested.h
-- Up-to-date: /include/arrow/array/builder_primitive.h
-- Up-to-date: /include/arrow/array/builder_union.h
-- Up-to-date: /include/arrow/csv/api.h
-- Up-to-date: /include/arrow/csv/chunker.h
-- Up-to-date: /include/arrow/csv/column-builder.h
-- Up-to-date: /include/arrow/csv/converter.h
-- Up-to-date: /include/arrow/csv/options.h
-- Up-to-date: /include/arrow/csv/parser.h
-- Up-to-date: /include/arrow/csv/reader.h
-- Up-to-date: /include/arrow/csv/test-common.h
-- Up-to-date: /include/arrow/io/api.h
-- Up-to-date: /include/arrow/io/buffered.h
-- Up-to-date: /include/arrow/io/compressed.h
-- Up-to-date: /include/arrow/io/file.h
-- Up-to-date: /include/arrow/io/hdfs.h
-- Up-to-date: /include/arrow/io/interfaces.h
-- Up-to-date: /include/arrow/io/memory.h
-- Up-to-date: /include/arrow/io/mman.h
-- Up-to-date: /include/arrow/io/readahead.h
-- Up-to-date: /include/arrow/io/test-common.h
-- Up-to-date: /include/arrow/util/basic_decimal.h
-- Up-to-date: /include/arrow/util/bit-stream-utils.h
-- Up-to-date: /include/arrow/util/bit-util.h
-- Up-to-date: /include/arrow/util/bpacking.h
-- Up-to-date: /include/arrow/util/checked_cast.h
-- Up-to-date: /include/arrow/util/compiler-util.h
-- Up-to-date: /include/arrow/util/compression.h
-- Up-to-date: /include/arrow/util/compression_brotli.h
-- Up-to-date: /include/arrow/util/compression_bz2.h
-- Up-to-date: /include/arrow/util/compression_lz4.h
-- Up-to-date: /include/arrow/util/compression_snappy.h
-- Up-to-date: /include/arrow/util/compression_zlib.h
-- Up-to-date: /include/arrow/util/compression_zstd.h
-- Up-to-date: /include/arrow/util/cpu-info.h
-- Up-to-date: /include/arrow/util/decimal.h
-- Up-to-date: /include/arrow/util/hash-util.h
-- Up-to-date: /include/arrow/util/hashing.h
-- Up-to-date: /include/arrow/util/int-util.h
-- Up-to-date: /include/arrow/util/io-util.h
-- Up-to-date: /include/arrow/util/key_value_metadata.h
-- Up-to-date: /include/arrow/util/lazy.h
-- Up-to-date: /include/arrow/util/logging.h
-- Up-to-date: /include/arrow/util/macros.h
-- Up-to-date: /include/arrow/util/memory.h
-- Up-to-date: /include/arrow/util/neon-util.h
-- Up-to-date: /include/arrow/util/parallel.h
-- Up-to-date: /include/arrow/util/parsing.h
-- Up-to-date: /include/arrow/util/rle-encoding.h
-- Up-to-date: /include/arrow/util/sse-util.h
-- Up-to-date: /include/arrow/util/stl.h
-- Up-to-date: /include/arrow/util/stopwatch.h
-- Up-to-date: /include/arrow/util/string.h
-- Up-to-date: /include/arrow/util/string_builder.h
-- Up-to-date: /include/arrow/util/string_view.h
-- Up-to-date: /include/arrow/util/task-group.h
-- Up-to-date: /include/arrow/util/thread-pool.h
-- Up-to-date: /include/arrow/util/trie.h
-- Up-to-date: /include/arrow/util/type_traits.h
-- Up-to-date: /include/arrow/util/utf8.h
-- Up-to-date: /include/arrow/util/variant.h
-- Up-to-date: /include/arrow/util/visibility.h
-- Up-to-date: /include/arrow/util/windows_compatibility.h
-- Up-to-date: /include/arrow/vendored/datetime.h
-- Up-to-date: /include/arrow/vendored/string_view.hpp
-- Up-to-date: /include/arrow/vendored/variant/recursive_wrapper.hpp
-- Up-to-date: /include/arrow/vendored/variant/variant.hpp
-- Up-to-date: /include/arrow/vendored/variant/variant_io.hpp
-- Up-to-date: /include/arrow/vendored/variant/variant_visitor.hpp
-- Installing: /lib/libarrow_python.so.13.0.0
-- Up-to-date: /lib/libarrow_python.so.13
-- Set runtime path of "/lib/libarrow_python.so.13.0.0" to ""
-- Up-to-date: /lib/libarrow_python.so
-- Installing: /lib/libarrow_python.a
-- Up-to-date: /include/arrow/python/api.h
-- Up-to-date: /include/arrow/python/arrow_to_pandas.h
-- Up-to-date: /include/arrow/python/benchmark.h
-- Up-to-date: /include/arrow/python/common.h
-- Up-to-date: /include/arrow/python/config.h
-- Up-to-date: /include/arrow/python/decimal.h
-- Up-to-date: /include/arrow/python/deserialize.h
-- Up-to-date: /include/arrow/python/helpers.h
-- Up-to-date: /include/arrow/python/inference.h
-- Up-to-date: /include/arrow/python/init.h
-- Up-to-date: /include/arrow/python/io.h
-- Up-to-date: /include/arrow/python/iterators.h
-- Up-to-date: /include/arrow/python/numpy_convert.h
-- Up-to-date: /include/arrow/python/numpy_interop.h
-- Up-to-date: /include/arrow/python/numpy_to_arrow.h
-- Up-to-date: /include/arrow/python/platform.h
-- Up-to-date: /include/arrow/python/pyarrow.h
-- Up-to-date: /include/arrow/python/pyarrow_api.h
-- Up-to-date: /include/arrow/python/pyarrow_lib.h
-- Up-to-date: /include/arrow/python/python_to_arrow.h
-- Up-to-date: /include/arrow/python/serialize.h
-- Up-to-date: /include/arrow/python/type_traits.h
-- Up-to-date: /include/arrow/python/visibility.h
-- Installing: /lib/pkgconfig/arrow-python.pc
usage: run_clang_format.py [-h] --clang_format_binary CLANG_FORMAT_BINARY
[--exclude_globs EXCLUDE_GLOBS] --source_dir
SOURCE_DIR [--fix] [--quiet]
run_clang_format.py: error: argument --clang_format_binary: expected one argument
CMakeFiles/format.dir/build.make:57: recipe for target 'CMakeFiles/format' failed
make[3]: *** [CMakeFiles/format] Error 2
CMakeFiles/Makefile2:178: recipe for target 'CMakeFiles/format.dir/all' failed
make[2]: *** [CMakeFiles/format.dir/all] Error 2
CMakeFiles/Makefile2:185: recipe for target 'CMakeFiles/format.dir/rule' failed
make[1]: *** [CMakeFiles/format.dir/rule] Error 2
Makefile:214: recipe for target 'format' failed
make: *** [format] Error 2
Traceback (most recent call last):
File "setup.py", line 29, in <module>
from Cython.Distutils import build_ext as _build_ext
ImportError: No module named Cython.Distutils
./run_conda.sh: 35: ./run_conda.sh: py.test: not found
Raw
Output of run_conda.sh after using apache repository rather than Quansight'st
### this is sonmething that I was encountering when trying to install directly with CMake in a Virtual Environment:
loning into 'arrow'...
./run_conda.sh: 13: ./run_conda.sh: conda: not found
-- Building using CMake version: 3.5.1
-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Arrow version: 0.13.0 (full: '0.13.0-SNAPSHOT')
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- clang-tidy not found
-- clang-format found at
-- infer not found
-- Found PythonInterp: /usr/bin/python (found version "2.7.12")
-- Found cpplint executable at /usr/local/bin/cpplint
-- Compiler command: env LANG=C /usr/bin/c++ -v
-- Compiler version: Using built-in specs.
COLLECT_GCC=/usr/bin/c++
COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/5/lto-wrapper
Target: x86_64-linux-gnu
Configured with: ../src/configure -v --with-pkgversion='Ubuntu 5.4.0-6ubuntu1~16.04.11' --with-bugurl=file:///usr/share/doc/gcc-5/README.Bugs --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr --program-suffix=-5 --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --with-system-zlib --disable-browser-plugin --enable-java-awt=gtk --enable-gtk-cairo --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-5-amd64/jre --enable-java-home --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-5-amd64 --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-5-amd64 --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --enable-objc-gc --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu
Thread model: posix
gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.11)
-- Compiler id: GNU
Selected compiler gcc 5.4.0
-- Performing Test CXX_SUPPORTS_SSE4_2
-- Performing Test CXX_SUPPORTS_SSE4_2 - Success
-- Performing Test CXX_SUPPORTS_ALTIVEC
-- Performing Test CXX_SUPPORTS_ALTIVEC - Failed
-- Performing Test CXX_SUPPORTS_ARMCRC
-- Performing Test CXX_SUPPORTS_ARMCRC - Failed
-- Arrow build warning level: PRODUCTION
Using ld linker
Configured for RELEASE build (set with cmake -DCMAKE_BUILD_TYPE={release,debug,...})
-- Build Type: RELEASE
-- BOOST_VERSION: 1.67.0
-- BROTLI_VERSION: v0.6.0
-- CARES_VERSION: 1.15.0
-- DOUBLE_CONVERSION_VERSION: v3.1.1
-- FLATBUFFERS_VERSION: v1.10.0
-- GBENCHMARK_VERSION: v1.4.1
-- GFLAGS_VERSION: v2.2.0
-- GLOG_VERSION: v0.3.5
-- GRPC_VERSION: v1.18.0
-- GTEST_VERSION: 1.8.1
-- JEMALLOC_VERSION: 17c897976c60b0e6e4f4a365c751027244dada7a
-- LZ4_VERSION: v1.8.3
-- ORC_VERSION: 1.5.4
-- PROTOBUF_VERSION: v3.6.1
-- RAPIDJSON_VERSION: v1.1.0
-- RE2_VERSION: 2018-10-01
-- SNAPPY_VERSION: 1.1.3
-- THRIFT_VERSION: 0.11.0
-- ZLIB_VERSION: 1.2.8
-- ZSTD_VERSION: v1.3.7
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- Found Threads: TRUE
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- regex
-- system
-- filesystem
-- Boost include dir: /usr/include
-- Boost libraries: /usr/lib/x86_64-linux-gnu/libboost_regex.so/usr/lib/x86_64-linux-gnu/libboost_system.so/usr/lib/x86_64-linux-gnu/libboost_filesystem.so
Added shared library dependency boost_system_shared: /usr/lib/x86_64-linux-gnu/libboost_system.so
Added shared library dependency boost_filesystem_shared: /usr/lib/x86_64-linux-gnu/libboost_filesystem.so
Added shared library dependency boost_regex_shared: /usr/lib/x86_64-linux-gnu/libboost_regex.so
Added static library dependency double-conversion_static: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- double-conversion include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/include
-- double-conversion static library: /home/ubuntu/boop/experiments/6/arrow/cpp/double-conversion_ep/src/double-conversion_ep/lib/libdouble-conversion.a
-- RapidJSON include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/rapidjson_ep/src/rapidjson_ep-install/include
-- Flatbuffers include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/include
-- Flatbuffers compiler: /home/ubuntu/boop/experiments/6/arrow/cpp/flatbuffers_ep-prefix/src/flatbuffers_ep-install/bin/flatc
Added static library dependency jemalloc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc_pic.a
Added shared library dependency jemalloc_shared: /home/ubuntu/boop/experiments/6/arrow/cpp/jemalloc_ep-prefix/src/jemalloc_ep/dist//lib/libjemalloc.so
-- Found hdfs.h at: /home/ubuntu/boop/experiments/6/arrow/cpp/thirdparty/hadoop/include/hdfs.h
-- Checking for module 'zlib'
-- Found zlib, version 1.2.8
-- Found the ZLIB shared library: /usr/lib/x86_64-linux-gnu/libz.so
Added shared library dependency zlib_shared: /usr/lib/x86_64-linux-gnu/libz.so
Added static library dependency snappy_static: /home/ubuntu/boop/experiments/6/arrow/cpp/snappy_ep/src/snappy_ep-install/lib/libsnappy.a
Added static library dependency brotli_enc_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlienc.a
Added static library dependency brotli_dec_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlidec.a
Added static library dependency brotli_common_static: /home/ubuntu/boop/experiments/6/arrow/cpp/brotli_ep/src/brotli_ep-install/lib/libbrotlicommon.a
Added static library dependency lz4_static: /home/ubuntu/boop/experiments/6/arrow/cpp/lz4_ep-prefix/src/lz4_ep/lib/liblz4.a
-- GLOG_CMAKE_CXX_FLAGS: -O3 -DNDEBUG -fPIC
-- CMAKE_CXX_FLAGS in glog: -O3 -DNDEBUG -fPIC
-- Glog version: v0.3.5
-- Glog include dir: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/include
-- Glog static library: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/lib/libglog.a
Added static library dependency glog_static: /home/ubuntu/boop/experiments/6/arrow/cpp/glog_ep-prefix/src/glog_ep/lib/libglog.a
-- CMAKE_C_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- CMAKE_CXX_FLAGS: -O3 -DNDEBUG -Wall -msse4.2
-- Found CUDA: /usr/local/cuda (found version "9.0")
-- CUDA Libraries: /usr/local/cuda/lib64/libcudart_static.a;-pthread;dl;/usr/lib/x86_64-linux-gnu/librt.so
-- Looking for backtrace
-- Looking for backtrace - found
-- backtrace facility detected in default set of libraries
-- Found Backtrace: /usr/include
-- Searching for Python libs in /usr/lib64;/usr/lib;/usr/lib/python2.7/config-x86_64-linux-gnu
-- Looking for python2.7
-- Found Python lib /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so
-- Found PythonLibs: /usr/lib/python2.7/config-x86_64-linux-gnu/libpython2.7.so
-- Found NumPy: version "1.14.2" /usr/local/lib/python2.7/dist-packages/numpy/core/include
CMake Error at /usr/share/cmake-3.5/Modules/CMakePackageConfigHelpers.cmake:254 (file):
file RELATIVE_PATH must be passed a full path to the file:
Call Stack (most recent call first):
CMakeLists.txt:882 (configure_package_config_file)
-- Configuring incomplete, errors occurred!
See also "/home/ubuntu/boop/experiments/6/arrow/cpp/CMakeFiles/CMakeOutput.log".
See also "/home/ubuntu/boop/experiments/6/arrow/cpp/CMakeFiles/CMakeError.log".
make: *** No targets specified and no makefile found. Stop.
make: *** No rule to make target 'install'. Stop.
make: *** No rule to make target 'format'. Stop.
Traceback (most recent call last):
File "setup.py", line 29, in <module>
from Cython.Distutils import build_ext as _build_ext
ImportError: No module named Cython.Distutils
./run_conda.sh: 36: ./run_conda.sh: py.test: not found
Raw
run_conda.sh
conda create -n pyarrow-dev
conda create -n pyarrow-dev
conda activate pyarrow-dev
conda install python numpy six setuptools cython pandas pytest \
cmake flatbuffers rapidjson boost-cpp thrift-cpp snappy zlib \
gflags brotli jemalloc lz4-c zstd \
double-conversion glog autoconf hypothesis numba \
clangdev=6 flake8 gtest gmock \
-c conda-forge
git clone https://github.com/quansight/arrow.git
conda activate pyarrow-dev
cd arrow
export ARROW_BUILD_TYPE=release
export ARROW_BUILD_TOOLCHAIN=$CONDA_PREFIX
export ARROW_HOME=$CONDA_PREFIX
export PARQUET_HOME=$CONDA_PREFIX
export NUMBAPRO_LIBDEVICE=/usr/local/cuda-9.0/nvvm/libdevice
export NUMBAPRO_NVVM=/usr/local/cuda-9.0/nvvm/lib64/libnvvm.so
cd cpp
cmake -DCMAKE_BUILD_TYPE=$ARROW_BUILD_TYPE \
-DCMAKE_INSTALL_PREFIX=$ARROW_HOME \
-DARROW_PARQUET=off -DARROW_PYTHON=on \
-DARROW_PLASMA=off -DARROW_BUILD_TESTS=OFF \
-DARROW_CUDA=on \
-DCLANG_FORMAT_BIN=`which clang-format` \
.
make -j3
make install
make format # after changing cpp/ files
cd ../python
python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-cuda develop
py.test -sv pyarrow/
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