andycasey

csr-dyn-76:MOOG2011_SCAT andycasey$ make -f Makefile.mac
g77 -w  Abfind.o Abpop.o Abunplot.o Batom.o Begin.o Binary.o Binplot.f Binplotprep.o Blends.o Bmolec.o Boxit.o Calmod.o Cdcalc.o Chabund.o Cog.o Cogplot.o Cogsyn.o Correl.o Cross.o Curve.o Damping.o Defcolor.o Discov.o Doflux.o Drawcurs.o Eqlib.o Estim.o Ewfind.o Ewweighted.o Fakeline.o Findtic.o Finish.o Fluxplot.o Gammabark.o Getasci.o Getcount.o Getnum.o Gridplo.o Gridsyn.o Infile.o Inlines.o Inmodel.o Invert.o Isotope.o Jexpint.o Lineinfo.o Linlimit.o Makeplot.o Minimax.o Moog.o Mydriver.o Nansi.o Nearly.o Number.o Obshead.o Oneline.o Opaccouls.o OpacHelium.o OpacHydrogen.o Opacit.o Opacmetals.o Opacscat.o Params.o Partfn.o Partnew.o Plotit.o Plotremember.o Pltabun.o Pltcog.o Pltflux.o Pltspec.o Pointcurs.o Prinfo.o Putasci.o Readobs.o Rinteg.o Smooth.o Specplot.o Stats.o Sunder.o Synpop.o Synspec.o Synth.o Taukap.o Total.o Trudamp.o Ucalc.o Vargauss.o Vmacro.o Voigt.o Wavecalc.o Weedout.o Writenumber.o Sourcefunc_scat_cont.o AngWeight.o Sourcefunc_

andycasey

#     makefile for MOOG with all of the common block assignments;
#     this is for a mac machine

#     here are the object files
OBJECTS = Abfind.o Abpop.o Abunplot.o Batom.o Begin.o Binary.o \
          Binplot.f Binplotprep.o Blends.o Bmolec.o Boxit.o \
          Calmod.o Cdcalc.o Chabund.o Cog.o Cogplot.o Cogsyn.o \
          Correl.o Cross.o Curve.o Damping.o Defcolor.o Discov.o \
          Doflux.o Drawcurs.o Eqlib.o Estim.o Ewfind.o \
          Ewweighted.o Fakeline.o Findtic.o Finish.o \

andycasey

csr-dyn-76:MOOG2011_SCAT andycasey$ make -f Makefile.mac
g77 -w  -lg2c -lm -lblas -llapack -lgfortran Abfind.o Abpop.o Abunplot.o Batom.o Begin.o Binary.o Binplot.f Binplotprep.o Blends.o Bmolec.o Boxit.o Calmod.o Cdcalc.o Chabund.o Cog.o Cogplot.o Cogsyn.o Correl.o Cross.o Curve.o Damping.o Defcolor.o Discov.o Doflux.o Drawcurs.o Eqlib.o Estim.o Ewfind.o Ewweighted.o Fakeline.o Findtic.o Finish.o Fluxplot.o Gammabark.o Getasci.o Getcount.o Getnum.o Gridplo.o Gridsyn.o Infile.o Inlines.o Inmodel.o Invert.o Isotope.o Jexpint.o Lineinfo.o Linlimit.o Makeplot.o Minimax.o Moog.o Mydriver.o Nansi.o Nearly.o Number.o Obshead.o Oneline.o Opaccouls.o OpacHelium.o OpacHydrogen.o Opacit.o Opacmetals.o Opacscat.o Params.o Partfn.o Partnew.o Plotit.o Plotremember.o Pltabun.o Pltcog.o Pltflux.o Pltspec.o Pointcurs.o Prinfo.o Putasci.o Readobs.o Rinteg.o Smooth.o Specplot.o Stats.o Sunder.o Synpop.o Synspec.o Synth.o Taukap.o Total.o Trudamp.o Ucalc.o Vargauss.o Vmacro.o Voigt.o Wavecalc.o Weedout.o Writenumber.o Sourcefun

andycasey

csr-dyn-76:MOOG2011_SCAT andycasey$ gfortran -o Abfind.o -L. Abfind.f -lX11 -lplotsub -ldevices -lutils -L/usr/X11R6/lib
ld: warning: in /usr/local/lib/libplotsub.a, file was built for unsupported file format which is not the architecture being linked (i386)
ld: warning: in /usr/local/lib/libdevices.a, file was built for unsupported file format which is not the architecture being linked (i386)
ld: warning: in /usr/local/lib/libutils.a, file was built for unsupported file format which is not the architecture being linked (i386)
Undefined symbols:
  "_fakeline_", referenced from:
      _abfind_ in ccvIy6je.o
  "_stats_", referenced from:
      _abfind_ in ccvIy6je.o
  "_pltabun_", referenced from:

andycasey

sr-dyn-76:MOOG2011_SCAT andycasey$ export LDPATH=/usr/local/share/libplot
csr-dyn-76:MOOG2011_SCAT andycasey$ export LDD=/usr/local/share/libplot
csr-dyn-76:MOOG2011_SCAT andycasey$ export LD_LIBRARY_PATH=/usr/local/share/libplot
csr-dyn-76:MOOG2011_SCAT andycasey$ export LD_PATH=/usr/local/share/libplot
csr-dyn-76:MOOG2011_SCAT andycasey$ gfortran -arch i386 -o Abfind.o -L. Abfind.f -lX11 -lplotsub -ldevices -lutils -L/usr/X11R6/lib -L/usr/local/share/libplot/
ld: warning: in /usr/local/lib/libplotsub.a, file was built for unsupported file format which is not the architecture being linked (i386)
ld: warning: in /usr/local/lib/libdevices.a, file was built for unsupported file format which is not the architecture being linked (i386)
ld: warning: in /usr/local/lib/libutils.a, file was built for unsupported file format which is not the architecture being linked (i386)
Undefined symbols:
  "_fakeline_", referenced from:

andycasey

    periodic_table = """H                                                  He
                        Li Be                               B  C  N  O  F  Ne
                        Na Mg                               Al Si P  S  Cl Ar
                        K  Ca Sc Ti V  Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr
                        Rb Sr Y  Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I  Xe
                        Cs Ba Lu Hf Ta W  Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn
                        Fr Ra Lr Rf Db Sg Bh Hs Mt Ds Rg Cn UUt"""
    
    lanthanoids    =   "La Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb"
    actinoids      =   "Ac Th Pa U  Np Pu Am Cm Bk Cf Es Fm Md No"

andycasey

from numpy import arange
from math import fractorial

def calculate_interstellar_extinction(Na_D_equivalent_width, num_terms=100, precision=0.01):
	"""Calculates interstellar extinction from the strength of the Na D1 line
	at 5889.95 \AA based on the relationship found by Munari & Zwitter (2006)."""


	alpha, err_alpha = 0.354, 0.01
	beta, err_beta = 11.0, 1.0

andycasey

mrmagoo:smh andycasey$ python -c 'import json;import numpy as np;a=np.arange(5);b=a.tolist();c=list(a);print b,c,b==c;print json.dumps(b);print json.dumps(c)'
[0, 1, 2, 3, 4] [0, 1, 2, 3, 4] True
[0, 1, 2, 3, 4]
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/json/__init__.py", line 231, in dumps
    return _default_encoder.encode(obj)
  File "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/json/encoder.py", line 201, in encode
    chunks = self.iterencode(o, _one_shot=True)
  File "/Library/Frameworks/Python.framework/Versions/7.3/lib/python2.7/json/encoder.py", line 264, in iterencode

andycasey

Frontend Development

Attention: if you attempt to fork this gist, github will think that you are a spammer and you will have to confirm that you are human with them. Apparantly there are too many links in this list. Also I update it rather frequently (see revisions on the left), so it's probably wise to not fork it anyway.

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andycasey

I'm on OS X 10.6.8 and I just installed cmake 2.8.11.2. Following the instructions on https://phantompy.readthedocs.org/en/latest/install.html#get-the-code, this is what I got:

mrmagoo:build andycasey$ cmake ..
-- The C compiler identification is GNU 4.2.1
-- The CXX compiler identification is GNU 4.2.1
-- Checking whether C compiler has -isysroot
-- Checking whether C compiler has -isysroot - yes
-- Checking whether C compiler supports OSX deployment target flag
-- Checking whether C compiler supports OSX deployment target flag - yes
-- Check for working C compiler: /usr/bin/cc