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Andrew Nelson andyfaff

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andyfaff / JAX-reflect
Last active April 17, 2024 06:28
Patch for basic JAX usage with Objective/ReflectModel/Structure
diff --git a/refnx/analysis/objective.py b/refnx/analysis/objective.py
index 9ff56057..c77139ad 100644
--- a/refnx/analysis/objective.py
+++ b/refnx/analysis/objective.py
@@ -674,8 +674,8 @@ class Objective(BaseObjective):
logl += (y - model) ** 2 / var_y
# nans play havoc
- if np.isnan(logl).any():
- raise RuntimeError("Objective.logl encountered a NaN.")
Function/S wottpy(r0, d0)
variable r0, d0
// Paths must be POSIX paths (using /).
// Paths containing spaces or other nonstandard characters
// must be single-quoted. See Apple Techical Note TN2065 for
// more on shell scripting via AppleScript.
string r0s, d0s
r0s = num2str(r0)
d0s = num2str(d0)
@andyfaff
andyfaff / run_locator.ipynb
Created March 1, 2024 01:00
Run locator for PLP
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@andyfaff
andyfaff / Volume_fraction_calculator.ipynb
Created May 12, 2023 02:22
Volume fraction profile generator
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@andyfaff
andyfaff / Simpson_rule_even_points.ipynb
Created March 28, 2023 03:57
Simpson's rule even number of points
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@andyfaff
andyfaff / find_adequate_resolution.ipynb
Created March 17, 2023 01:04
Find an adequate resolution smearing oversample
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@andyfaff
andyfaff / numba_reflectivity.ipynb
Created March 9, 2023 22:17
Numba reflectivity kernel investigation
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@andyfaff
andyfaff / docker_commands.txt
Last active February 22, 2023 03:16
Docker commands
# 32 bit ubuntu on a 64 bit Intel host
docker run --rm -it -v $PWD:/io --platform=linux/i386 i686/ubuntu
docker run --rm -it -v $PWD:/io --platform=linux/i386 i386/ubuntu:focal
# if you're having troubles with SSH certificates on the 32 bit host
export SSL_CERT_FILE=/etc/ssl/certs/ca-certificates.crt
@andyfaff
andyfaff / EP4_XY_Hexagonal_pattern.ipynb
Created October 17, 2022 02:55
EP4 Hexagonal pattern map generator
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