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cutadapt error
Raw
output.txt
apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3
... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -G
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -G
cutadapt: error: no such option: -G
cutadapt: error: no such option: -G
apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
apps/cutadapt/1.8/gcc-4.4.6+python-2.7.3 ... VARIANT (have alternative: apps/cutadapt/1.1/gcc-4.4.6+python-2.7.3)
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -A
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -A
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -A
Usage: cutadapt [options] <FASTA/FASTQ FILE> [<QUALITY FILE>]
$ cutadapt -e ERROR-RATE -a ADAPTER-SEQUENCE input.fastq > output.fastq
-q CUTOFF, --quality-cutoff=CUTOFF
sequence; cut sequence at the index at which the sum
cutadapt: error: no such option: -A
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