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/# open-babel - 2016-05-05_14-35-56.txt

Created May 5, 2016 19:43
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open-babel on 3.10.0-327.el7.x86_64 - Homebrew build logs
Raw
# open-babel - 2016-05-05_14-35-56.txt
Homebrew build logs for open-babel on 3.10.0-327.el7.x86_64
Build date: 2016-05-05 14:35:56
Raw
00.config.out
HOMEBREW_VERSION: 0.9.9
ORIGIN: https://github.com/Linuxbrew/brew.git
HEAD: 3f454c4de43d023c9712bc6837a8bc8f342259d7
Last commit: 2 hours ago
Core tap ORIGIN: https://github.com/Linuxbrew/homebrew-core
Core tap HEAD: f42375b4dc560a17d319579510f7b1ec349f6088
Core tap last commit: 4 hours ago
HOMEBREW_PREFIX: /usr/local/brew
HOMEBREW_REPOSITORY: /usr/local/brew
HOMEBREW_CELLAR: /usr/local/brew/Cellar
HOMEBREW_BOTTLE_DOMAIN: https://linuxbrew.bintray.com
CPU: 8-core 64-bit core2
Kernel: Linux 3.10.0-327.el7.x86_64 x86_64 GNU/Linux
OS: CentOS Linux release 7.2.1511 (Core)
OS glibc: 2.17
OS gcc: 4.8.5
Linuxbrew glibc: 2.19
Linuxbrew gcc: 5.3.0
Clang: N/A
X11: 2.7.8 => /usr
System Ruby: 2.0.0-p598 => /usr/bin/ruby
Perl: /usr/bin/perl
Python: /usr/local/brew/bin/python => /usr/local/brew/Cellar/python/2.7.11/bin/python2.7
Ruby: /usr/bin/ruby
Java: openjdk version "1.8.0_91"
Raw
00.doctor.out
Your system is ready to brew.
Raw
01.cmake
2016-05-05 14:35:47 -0500
cmake
-DCMAKE_C_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_CXX_FLAGS_RELEASE=-DNDEBUG
-DCMAKE_INSTALL_PREFIX=/usr/local/brew/Cellar/open-babel/2.3.2
-DCMAKE_BUILD_TYPE=Release
-DCMAKE_FIND_FRAMEWORK=LAST
-DCMAKE_VERBOSE_MAKEFILE=ON
-Wno-dev
-DCMAKE_BUILD_WITH_INSTALL_RPATH=1
-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=1
..
-- The C compiler identification is GNU 5.3.0
-- The CXX compiler identification is GNU 5.3.0
-- Check for working C compiler: /usr/local/brew/bin/gcc-5
-- Check for working C compiler: /usr/local/brew/bin/gcc-5 -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/brew/bin/g++-5
-- Check for working CXX compiler: /usr/local/brew/bin/g++-5 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Using included inchi library.
-- Found LibXml2: /usr/local/brew/lib64/libxml2.so (found version "2.9.3")
-- Found ZLIB: /usr/local/brew/lib64/libz.so (found version "1.2.8")
-- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS)
-- Looking for conio.h
-- Looking for conio.h - not found
-- Looking for sys/time.h
-- Looking for sys/time.h - found
-- Looking for time.h
-- Looking for time.h - found
-- Looking for strings.h
-- Looking for strings.h - found
-- Looking for rpc/xdr.h
-- Looking for rpc/xdr.h - found
-- Looking for regex.h
-- Looking for regex.h - found
-- Looking for C++ include sstream
-- Looking for C++ include sstream - found
-- Looking for rint
-- Looking for rint - not found
-- Looking for snprintf
-- Looking for snprintf - found
-- Looking for sranddev
-- Looking for sranddev - not found
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strncasecmp
-- Looking for strncasecmp - found
-- Looking for dlopen in dl
-- Looking for dlopen in dl - found
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of clock_t
-- Check size of clock_t - done
-- Performing Test SCANDIR_NEEDS_CONST
-- Performing Test SCANDIR_NEEDS_CONST - Failed
-- Performing Test HAVE_GCC_VISIBILITY
-- Performing Test HAVE_GCC_VISIBILITY - Success
-- Found Eigen3: /usr/local/brew/include/eigen3 (Required is at least version "2.91.0")
-- Found PkgConfig: /usr/local/brew/bin/pkg-config (found version "0.29.1")
-- Checking for module 'cairo'
-- No package 'cairo' found
-- Could NOT find Cairo. PNG output will NOT be supported.
-- Looking for getopt
-- Looking for getopt - found
-- Attempting to build the GUI
-- wxWidgets not found => GUI will not be built
-- Found PythonInterp: /usr/local/brew/bin/python (found version "2.7.11")
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build
Raw
02.make
2016-05-05 14:35:56 -0500
make
/usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -H/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2 -B/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build --check-build-system CMakeFiles/Makefile.cmake 0
/usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -E cmake_progress_start /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/CMakeFiles /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[1]: Entering directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/depend
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/depend
make[2]: Entering directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build && /usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2 /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi/CMakeFiles/inchi.dir/DependInfo.cmake --color=
make[2]: Entering directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build && /usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -E cmake_depends "Unix Makefiles" /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2 /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/CMakeFiles/openbabel.dir/DependInfo.cmake --color=
Scanning dependencies of target inchi
make[2]: Leaving directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
make -f src/formats/libinchi/CMakeFiles/inchi.dir/build.make src/formats/libinchi/CMakeFiles/inchi.dir/build
make[2]: Entering directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_bns.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_bns.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichi_bns.c
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichican2.o
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichi_io.o
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicans.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichi_io.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichi_io.c
[ 1%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichicano.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichican2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichican2.c
[ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiisot.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicano.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichicano.c
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichicans.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichicans.c
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiisot.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiisot.c
[ 2%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichilnct.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichilnct.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichilnct.c
Scanning dependencies of target openbabel
make[2]: Leaving directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
make -f src/CMakeFiles/openbabel.dir/build.make src/CMakeFiles/openbabel.dir/build
make[2]: Entering directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/alias.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src && /usr/local/brew/bin/g++-5 -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -Os -w -pipe -march=core2 -DNDEBUG -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/alias.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp
[ 3%] Building CXX object src/CMakeFiles/openbabel.dir/atom.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src && /usr/local/brew/bin/g++-5 -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DMAKE_OBDLL -DUSING_DYNAMIC_LIBS -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -Os -w -pipe -march=core2 -DNDEBUG -O2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/openbabel.dir/atom.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/atom.cpp
[ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimak2.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimak2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichimak2.c
In file included from /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:19:0,
from /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:17:
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/shared_ptr.h:34:16: error: 'std::tr1' has not been declared
using std::tr1::shared_ptr;
^
[ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimake.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimake.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichimake.c
In file included from /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:17:0:
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:118:47: error: 'shared_ptr' was not declared in this scope
typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:118:73: error: template argument 2 is invalid
typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:118:75: error: template argument 1 is invalid
typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:118:75: error: template argument 2 is invalid
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:118:77: error: expected unqualified-id before '>' token
typedef std::vector< std::pair<std::string, shared_ptr<OBSmartsPattern> > > SmartsTable;
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/openbabel/alias.h:119:24: error: 'SmartsTable' has not been declared
static bool LoadFile(SmartsTable& smtable);
^
[ 3%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap1.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap1.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichimap1.c
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:239:26: error: 'bool OpenBabel::AliasData::LoadFile' is not a static data member of 'class OpenBabel::AliasData'
bool AliasData::LoadFile(SmartsTable& smtable)
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:239:26: error: 'SmartsTable' was not declared in this scope
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:239:39: error: 'smtable' was not declared in this scope
bool AliasData::LoadFile(SmartsTable& smtable)
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:240:1: error: expected ',' or ';' before '{' token
{
^
/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/alias.cpp:396:1: error: expected '}' at end of input
}//namespace
^
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap2.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichimap2.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichimap4.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichimap4.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichimap4.c
make[2]: *** [src/CMakeFiles/openbabel.dir/alias.o] Error 1
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cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichinorm.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichinorm.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiparm.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiparm.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiparm.c
[ 4%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt1.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt1.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiprt1.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt2.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiprt2.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiprt3.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiprt3.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiprt3.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiqueu.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiqueu.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiqueu.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiread.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiread.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiread.c
[ 5%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichiring.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichiring.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichiring.c
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cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr1.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichirvr1.c
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cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichirvr2.c
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make[2]: Leaving directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
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cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichirvr7.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichirvr7.c
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cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichisort.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichisort.c
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichister.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichister.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichister.c
[ 7%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ichitaut.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ichitaut.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ichitaut.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_base26.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_base26.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ikey_base26.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/ikey_dll.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/ikey_dll.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/ikey_dll.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/inchi_dll.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a.c
[ 8%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_a2.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_a2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/inchi_dll_a2.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/inchi_dll_main.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/inchi_dll_main.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/inchi_dll_main.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/runichi.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/runichi.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/runichi.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/sha2.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/sha2.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/sha2.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/strutil.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/strutil.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/strutil.c
[ 9%] Building C object src/formats/libinchi/CMakeFiles/inchi.dir/util.o
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/bin/gcc-5 -DBUILD_LINK_AS_DLL -DHAVE_EIGEN -DHAVE_EIGEN3 -DHAVE_LIBZ -DHAVE_SHARED_POINTER -DUSING_DYNAMIC_LIBS -D_USRDLL -I/usr/local/brew/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/include -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/data -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include -I/usr/local/brew/include/eigen3 -I/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/include/inchi -Os -w -pipe -march=core2 -DNDEBUG -fPIC -DOB_MODULE_PATH="\"/usr/local/brew/Cellar/open-babel/2.3.2/lib/openbabel/2.3.2\"" -o CMakeFiles/inchi.dir/util.o -c /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/src/formats/libinchi/util.c
[ 10%] Linking C shared library ../../../lib/libinchi.so
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -E cmake_link_script CMakeFiles/inchi.dir/link.txt --verbose=1
/usr/local/brew/bin/gcc-5 -fPIC -Os -w -pipe -march=core2 -DNDEBUG -Wl,--enable-new-dtags -Wl,--fatal-warnings -Wl,--no-undefined -lc -L/usr/local/brew/lib -Wl,--dynamic-linker=/usr/local/brew/lib/ld.so -Wl,-rpath,/usr/local/brew/lib -shared -Wl,-soname,libinchi.so.0 -o ../../../lib/libinchi.so.0.4.1 CMakeFiles/inchi.dir/ichi_bns.o CMakeFiles/inchi.dir/ichi_io.o CMakeFiles/inchi.dir/ichican2.o CMakeFiles/inchi.dir/ichicano.o CMakeFiles/inchi.dir/ichicans.o CMakeFiles/inchi.dir/ichiisot.o CMakeFiles/inchi.dir/ichilnct.o CMakeFiles/inchi.dir/ichimak2.o CMakeFiles/inchi.dir/ichimake.o CMakeFiles/inchi.dir/ichimap1.o CMakeFiles/inchi.dir/ichimap2.o CMakeFiles/inchi.dir/ichimap4.o CMakeFiles/inchi.dir/ichinorm.o CMakeFiles/inchi.dir/ichiparm.o CMakeFiles/inchi.dir/ichiprt1.o CMakeFiles/inchi.dir/ichiprt2.o CMakeFiles/inchi.dir/ichiprt3.o CMakeFiles/inchi.dir/ichiqueu.o CMakeFiles/inchi.dir/ichiread.o CMakeFiles/inchi.dir/ichiring.o CMakeFiles/inchi.dir/ichirvr1.o CMakeFiles/inchi.dir/ichirvr2.o CMakeFiles/inchi.dir/ichirvr3.o CMakeFiles/inchi.dir/ichirvr4.o CMakeFiles/inchi.dir/ichirvr5.o CMakeFiles/inchi.dir/ichirvr6.o CMakeFiles/inchi.dir/ichirvr7.o CMakeFiles/inchi.dir/ichisort.o CMakeFiles/inchi.dir/ichister.o CMakeFiles/inchi.dir/ichitaut.o CMakeFiles/inchi.dir/ikey_base26.o CMakeFiles/inchi.dir/ikey_dll.o CMakeFiles/inchi.dir/inchi_dll.o CMakeFiles/inchi.dir/inchi_dll_a.o CMakeFiles/inchi.dir/inchi_dll_a2.o CMakeFiles/inchi.dir/inchi_dll_main.o CMakeFiles/inchi.dir/runichi.o CMakeFiles/inchi.dir/sha2.o CMakeFiles/inchi.dir/strutil.o CMakeFiles/inchi.dir/util.o /usr/local/brew/lib64/libm.so -ldl /usr/local/brew/lib64/libz.so -lc -Wl,-rpath,/usr/local/brew/lib64::::::::::::::::::::::::::::::::::::::::::::
cd /tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build/src/formats/libinchi && /usr/local/brew/Cellar/cmake/3.5.2/bin/cmake -E cmake_symlink_library ../../../lib/libinchi.so.0.4.1 ../../../lib/libinchi.so.0 ../../../lib/libinchi.so
make[2]: Leaving directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
[ 10%] Built target inchi
make[1]: Leaving directory `/tmp/open-babel-20160505-22141-1jcorhv/openbabel-2.3.2/build'
make: *** [all] Error 2
HOMEBREW_VERSION: 0.9.9
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Core tap HEAD: 19f631a606fdd93ab78afa368b8198cf612a69d9
Core tap last commit: 21 hours ago
HOMEBREW_PREFIX: /usr/local/brew
HOMEBREW_REPOSITORY: /usr/local/brew
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Linuxbrew glibc: 2.19
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System Ruby: 2.0.0-p598 => /usr/bin/ruby
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Ruby: /usr/bin/ruby
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CC: /usr/local/brew/bin/gcc-5 => /usr/local/brew/Cellar/gcc/5.3.0/bin/gcc-5
CXX: /usr/local/brew/bin/g++-5 => /usr/local/brew/Cellar/gcc/5.3.0/bin/g++-5
OBJC: /usr/local/brew/bin/gcc-5
OBJCXX: /usr/local/brew/bin/g++-5
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CPPFLAGS: -isystem/usr/local/brew/include
LDFLAGS: -L/usr/local/brew/lib -Wl,--dynamic-linker=/usr/local/brew/lib/ld.so -Wl,-rpath,/usr/local/brew/lib
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CPATH: /usr/local/brew/include
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