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2015-06-10 18:00:47 -0400
cmake
-DCMAKE_INSTALL_PREFIX='/usr/local/Cellar/rdkit/2015.03.1'
-DCMAKE_BUILD_TYPE=None
-DCMAKE_FIND_FRAMEWORK=LAST
-Wno-dev
-DRDK_INSTALL_INTREE=OFF
-DRDK_BUILD_CPP_TESTS=OFF
-DRDK_INSTALL_STATIC_LIBS=OFF
-DPYTHON_EXECUTABLE='/usr/bin/python'
-DPYTHON_INCLUDE_DIR='/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7'
-DPYTHON_LIBRARY='/System/Library/Frameworks/Python.framework/Versions/2.7/Python'
-DPYTHON_NUMPY_INCLUDE_PATH='/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include'
.
-- The C compiler identification is AppleClang 6.1.0.6020053
-- The CXX compiler identification is AppleClang 6.1.0.6020053
-- Check for working C compiler: /usr/local/Library/ENV/4.3/clang
-- Check for working C compiler: /usr/local/Library/ENV/4.3/clang -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/Library/ENV/4.3/clang++
-- Check for working CXX compiler: /usr/local/Library/ENV/4.3/clang++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Found PythonInterp: /usr/bin/python (found version "2.7.6")
-- Found PythonLibs: /System/Library/Frameworks/Python.framework/Versions/2.7/Python (found version "2.7.6")
-- Boost version: 1.58.0
-- Found the following Boost libraries:
-- python
Python Install directory /usr/local/Cellar/rdkit/2015.03.1/lib/python2.7/site-packages
-- Looking for include file pthread.h
-- Looking for include file pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - found
-- Found Threads: TRUE
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1
clang called with: CMakeCCompilerId.c
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superenv executed: clang CMakeCCompilerId.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: CMakeCXXCompilerId.cpp
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superenv executed: clang++ CMakeCXXCompilerId.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang called with: -o CMakeFiles/cmTryCompileExec812099830.dir/testCCompiler.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/CMakeFiles/CMakeTmp/testCCompiler.c
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clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec812099830.dir/testCCompiler.c.o -o cmTryCompileExec812099830
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clang called with: -o CMakeFiles/cmTryCompileExec3317895025.dir/CMakeCCompilerABI.c.o -c /usr/local/Cellar/cmake/3.2.2/share/cmake/Modules/CMakeCCompilerABI.c
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clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTryCompileExec3317895025.dir/CMakeCCompilerABI.c.o -o cmTryCompileExec3317895025
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superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
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clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec249470875.dir/feature_tests.c.o -o cmTryCompileExec249470875
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clang called with: -std=c90 -o CMakeFiles/cmTryCompileExec3724852437.dir/feature_tests.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/CMakeFiles/feature_tests.c
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clang called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec3724852437.dir/feature_tests.c.o -o cmTryCompileExec3724852437
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clang++ called with: -o CMakeFiles/cmTryCompileExec1430367219.dir/testCXXCompiler.cxx.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/CMakeFiles/CMakeTmp/testCXXCompiler.cxx
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
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clang++ called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec1430367219.dir/testCXXCompiler.cxx.o -o cmTryCompileExec1430367219
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superenv executed: clang++ -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec1430367219.dir/testCXXCompiler.cxx.o -o cmTryCompileExec1430367219 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -o CMakeFiles/cmTryCompileExec3878129396.dir/CMakeCXXCompilerABI.cpp.o -c /usr/local/Cellar/cmake/3.2.2/share/cmake/Modules/CMakeCXXCompilerABI.cpp
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
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clang++ called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names -v -Wl,-v CMakeFiles/cmTryCompileExec3878129396.dir/CMakeCXXCompilerABI.cpp.o -o cmTryCompileExec3878129396
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clang++ called with: -std=c++1y -o CMakeFiles/cmTryCompileExec2079318791.dir/feature_tests.cxx.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/CMakeFiles/feature_tests.cxx
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
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clang++ called with: -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec2079318791.dir/feature_tests.cxx.o -o cmTryCompileExec2079318791
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
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clang++ called with: -std=c++11 -o CMakeFiles/cmTryCompileExec2804965090.dir/feature_tests.cxx.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/CMakeFiles/feature_tests.cxx
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superenv executed: clang++ -pipe -w -Os -march=native -Wl,-search_paths_first -Wl,-headerpad_max_install_names CMakeFiles/cmTryCompileExec2804965090.dir/feature_tests.cxx.o -o cmTryCompileExec2804965090 -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
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make
Scanning dependencies of target inchi_support
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[ 1%] [ 1%] [ 1%] Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hcdriver.c.o
Building C object Code/ML/Cluster/Murtagh/CMakeFiles/hc.dir/hc.c.o
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Linking C shared library ../../../../lib/libhc.dylib
Scanning dependencies of target ChemicalFeatures
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Building CXX object Code/ChemicalFeatures/CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o
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[ 2%] [ 3%] [ 3%] [ 3%] [ 4%] Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Invariant.cpp.o
Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/types.cpp.o
Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/utils.cpp.o
Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/RDLog.cpp.o
Building CXX object Code/RDGeneral/CMakeFiles/RDGeneral.dir/Dict.cpp.o
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[ 6%] Building CXX object Code/Numerics/EigenSolvers/CMakeFiles/EigenSolvers.dir/PowerEigenSolver.cpp.o
Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/DistPicker.cpp.o
Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/MaxMinPicker.cpp.o
Building CXX object Code/SimDivPickers/CMakeFiles/SimDivPickers.dir/HierarchicalClusterPicker.cpp.o
[ 6%] [ 7%] Building CXX object Code/DataStructs/CMakeFiles/DataStructs.dir/BitVect.cpp.o
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Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform2D.cpp.o
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[ 12%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/MaxMinPicker.cpp.o
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Linking CXX shared module ../../../../rdkit/ML/Cluster/Clustering.so
Undefined symbols for architecture x86_64:
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boost::python::api::object boost::python::detail::make_function_aux<_object* (*)(boost::python::api::object, int, int), boost::python::default_call_policies, boost::mpl::vector4<_object*, boost::python::api::object, int, int>, mpl_::int_<3> >(_object* (*)(boost::python::api::object, int, int), boost::python::default_call_policies const&, boost::mpl::vector4<_object*, boost::python::api::object, int, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<3>) in Clustering.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<_object* (*)(boost::python::api::object, int, int, int), boost::python::default_call_policies, boost::mpl::vector5<_object*, boost::python::api::object, int, int, int>, mpl_::int_<4> >(_object* (*)(boost::python::api::object, int, int, int), boost::python::default_call_policies const&, boost::mpl::vector5<_object*, boost::python::api::object, int, int, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<4>) in Clustering.cpp.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [rdkit/ML/Cluster/Clustering.so] Error 1
make[1]: *** [Code/ML/Cluster/Murtagh/CMakeFiles/Clustering.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 12%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/Transform3D.cpp.o
Linking CXX shared library ../../../lib/libInfoTheory.dylib
[ 13%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/DiscreteValueVect.cpp.o
[ 13%] Built target InfoTheory
[ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/UniformGrid3D.cpp.o
[ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/HierarchicalClusterPicker.cpp.o
[ 14%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/SparseIntVect.cpp.o
[ 14%] Building CXX object Code/Geometry/CMakeFiles/RDGeometryLib.dir/GridUtils.cpp.o
[ 14%] Building CXX object Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/rdSimDivPickers.cpp.o
Linking CXX shared module ../../../../rdkit/DataManip/Metric/rdMetricMatrixCalc.so
Undefined symbols for architecture x86_64:
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boost::python::api::object boost::python::detail::make_function_aux<_object* (*)(boost::python::api::object), boost::python::default_call_policies, boost::mpl::vector2<_object*, boost::python::api::object>, mpl_::int_<0> >(_object* (*)(boost::python::api::object), boost::python::default_call_policies const&, boost::mpl::vector2<_object*, boost::python::api::object> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in rdMetricMatrixCalc.cpp.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [rdkit/DataManip/Metric/rdMetricMatrixCalc.so] Error 1
make[1]: *** [Code/DataManip/MetricMatrixCalc/Wrap/CMakeFiles/rdMetricMatrixCalc.dir/all] Error 2
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_SparseBV.cpp.o
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_ExplicitBV.cpp.o
Linking CXX shared library ../../lib/libRDGeometryLib.dylib
[ 15%] Built target RDGeometryLib
[ 15%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_BitOps.cpp.o
[ 16%] Building CXX object Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/wrap_Utils.cpp.o
Linking CXX shared module ../../../rdkit/SimDivFilters/rdSimDivPickers.so
Undefined symbols for architecture x86_64:
"boost::python::objects::function_object(boost::python::objects::py_function const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&)", referenced from:
boost::python::api::object boost::python::detail::make_function_aux<std::vector<int, std::allocator<int> > (*)(RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int, bool), boost::python::default_call_policies, boost::mpl::vector8<std::vector<int, std::allocator<int> >, RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int, bool>, mpl_::int_<7> >(std::vector<int, std::allocator<int> > (*)(RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int, bool), boost::python::default_call_policies const&, boost::mpl::vector8<std::vector<int, std::allocator<int> >, RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int, bool> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<7>) in MaxMinPicker.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<std::vector<int, std::allocator<int> > (*)(RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int), boost::python::default_call_policies, boost::mpl::vector7<std::vector<int, std::allocator<int> >, RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int>, mpl_::int_<6> >(std::vector<int, std::allocator<int> > (*)(RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int), boost::python::default_call_policies const&, boost::mpl::vector7<std::vector<int, std::allocator<int> >, RDPickers::MaxMinPicker*, boost::python::api::object, int, int, boost::python::api::object, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<6>) in MaxMinPicker.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<void (*)(_object*), boost::python::default_call_policies, boost::mpl::vector2<void, _object*>, mpl_::int_<0> >(void (*)(_object*), boost::python::default_call_policies const&, boost::mpl::vector2<void, _object*> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in MaxMinPicker.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > (*)(RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int), boost::python::default_call_policies, boost::mpl::vector5<std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >, RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int>, mpl_::int_<0> >(std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > > (*)(RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int), boost::python::default_call_policies const&, boost::mpl::vector5<std::vector<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >, RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in HierarchicalClusterPicker.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<std::vector<int, std::allocator<int> > (*)(RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int), boost::python::default_call_policies, boost::mpl::vector5<std::vector<int, std::allocator<int> >, RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int>, mpl_::int_<0> >(std::vector<int, std::allocator<int> > (*)(RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int), boost::python::default_call_policies const&, boost::mpl::vector5<std::vector<int, std::allocator<int> >, RDPickers::HierarchicalClusterPicker*, boost::python::api::object&, int, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in HierarchicalClusterPicker.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<void (*)(_object*, RDPickers::HierarchicalClusterPicker::ClusterMethod), boost::python::default_call_policies, boost::mpl::vector3<void, _object*, RDPickers::HierarchicalClusterPicker::ClusterMethod>, mpl_::int_<0> >(void (*)(_object*, RDPickers::HierarchicalClusterPicker::ClusterMethod), boost::python::default_call_policies const&, boost::mpl::vector3<void, _object*, RDPickers::HierarchicalClusterPicker::ClusterMethod> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in HierarchicalClusterPicker.cpp.o
"boost::python::objects::register_dynamic_id_aux(boost::python::type_info, std::pair<void*, boost::python::type_info> (*)(void*))", referenced from:
boost::python::class_<RDPickers::MaxMinPicker, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, char const*) in MaxMinPicker.cpp.o
RDPickers::HierarchCP_wrap::wrap() in HierarchicalClusterPicker.cpp.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [rdkit/SimDivFilters/rdSimDivPickers.so] Error 1
make[1]: *** [Code/SimDivPickers/Wrap/CMakeFiles/rdSimDivPickers.dir/all] Error 2
Linking CXX shared module ../../../rdkit/rdBase.so
Undefined symbols for architecture x86_64:
"boost::python::objects::function_object(boost::python::objects::py_function const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&)", referenced from:
boost::python::api::object boost::python::detail::make_function_aux<void (*)(std::string, std::string, int), boost::python::default_call_policies, boost::mpl::vector4<void, std::string, std::string, int>, mpl_::int_<3> >(void (*)(std::string, std::string, int), boost::python::default_call_policies const&, boost::mpl::vector4<void, std::string, std::string, int> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<3>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<std::string (*)(), boost::python::default_call_policies, boost::mpl::vector1<std::string>, mpl_::int_<0> >(std::string (*)(), boost::python::default_call_policies const&, boost::mpl::vector1<std::string> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<bool (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*), boost::python::default_call_policies, boost::mpl::vector3<bool, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*>, mpl_::int_<0> >(bool (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*), boost::python::default_call_policies const&, boost::mpl::vector3<bool, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<boost::python::api::object (*)(boost::python::back_reference<std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&>, _object*), boost::python::default_call_policies, boost::mpl::vector3<boost::python::api::object, boost::python::back_reference<std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&>, _object*>, mpl_::int_<0> >(boost::python::api::object (*)(boost::python::back_reference<std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&>, _object*), boost::python::default_call_policies const&, boost::mpl::vector3<boost::python::api::object, boost::python::back_reference<std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&>, _object*> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<void (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*), boost::python::default_call_policies, boost::mpl::vector3<void, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*>, mpl_::int_<0> >(void (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*), boost::python::default_call_policies const&, boost::mpl::vector3<void, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<void (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*, _object*), boost::python::default_call_policies, boost::mpl::vector4<void, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*, _object*>, mpl_::int_<0> >(void (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*, _object*), boost::python::default_call_policies const&, boost::mpl::vector4<void, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&, _object*, _object*> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<unsigned long (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&), boost::python::default_call_policies, boost::mpl::vector2<unsigned long, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&>, mpl_::int_<0> >(unsigned long (*)(std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&), boost::python::default_call_policies const&, boost::mpl::vector2<unsigned long, std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in RDBase.cpp.o
...
"boost::python::objects::register_dynamic_id_aux(boost::python::type_info, std::pair<void*, boost::python::type_info> (*)(void*))", referenced from:
boost::python::class_<boost::python::objects::iterator_range<boost::python::return_internal_reference<1ul, boost::python::default_call_policies>, std::_List_iterator<std::vector<int, std::allocator<int> > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, boost::python::no_init_t) in RDBase.cpp.o
boost::python::class_<boost::python::objects::iterator_range<boost::python::return_value_policy<boost::python::return_by_value, boost::python::default_call_policies>, std::_List_iterator<std::vector<int, std::allocator<int> > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, boost::python::no_init_t) in RDBase.cpp.o
boost::python::class_<std::list<std::vector<int, std::allocator<int> >, std::allocator<std::vector<int, std::allocator<int> > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, char const*) in RDBase.cpp.o
boost::python::class_<boost::python::objects::iterator_range<boost::python::return_value_policy<boost::python::return_by_value, boost::python::default_call_policies>, std::_List_iterator<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, boost::python::no_init_t) in RDBase.cpp.o
boost::python::class_<std::list<int, std::allocator<int> >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, char const*) in RDBase.cpp.o
boost::python::class_<boost::python::objects::iterator_range<boost::python::return_internal_reference<1ul, boost::python::default_call_policies>, __gnu_cxx::__normal_iterator<std::vector<double, std::allocator<double> >*, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, boost::python::no_init_t) in RDBase.cpp.o
boost::python::class_<boost::python::objects::iterator_range<boost::python::return_value_policy<boost::python::return_by_value, boost::python::default_call_policies>, __gnu_cxx::__normal_iterator<std::vector<double, std::allocator<double> >*, std::vector<std::vector<double, std::allocator<double> >, std::allocator<std::vector<double, std::allocator<double> > > > > >, boost::python::detail::not_specified, boost::python::detail::not_specified, boost::python::detail::not_specified>::class_(char const*, boost::python::no_init_t) in RDBase.cpp.o
...
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [rdkit/rdBase.so] Error 1
make[1]: *** [Code/RDBoost/Wrap/CMakeFiles/rdBase.dir/all] Error 2
Linking CXX shared module ../../../rdkit/DataStructs/cDataStructs.so
Undefined symbols for architecture x86_64:
"boost::python::objects::function_object(boost::python::objects::py_function const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&)", referenced from:
boost::python::api::object boost::python::detail::make_function_aux<void (*)(RDKit::DiscreteValueVect const&, boost::python::api::object), boost::python::default_call_policies, boost::mpl::vector3<void, RDKit::DiscreteValueVect const&, boost::python::api::object>, mpl_::int_<2> >(void (*)(RDKit::DiscreteValueVect const&, boost::python::api::object), boost::python::default_call_policies const&, boost::mpl::vector3<void, RDKit::DiscreteValueVect const&, boost::python::api::object> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<2>) in DataStructs.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<void (*)(ExplicitBitVect const&, boost::python::api::object), boost::python::default_call_policies, boost::mpl::vector3<void, ExplicitBitVect const&, boost::python::api::object>, mpl_::int_<2> >(void (*)(ExplicitBitVect const&, boost::python::api::object), boost::python::default_call_policies const&, boost::mpl::vector3<void, ExplicitBitVect const&, boost::python::api::object> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<2>) in DataStructs.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<unsigned int (*)(RDKit::DiscreteValueVect const&, RDKit::DiscreteValueVect const&), boost::python::default_call_policies, boost::mpl::vector3<unsigned int, RDKit::DiscreteValueVect const&, RDKit::DiscreteValueVect const&>, mpl_::int_<0> >(unsigned int (*)(RDKit::DiscreteValueVect const&, RDKit::DiscreteValueVect const&), boost::python::default_call_policies const&, boost::mpl::vector3<unsigned int, RDKit::DiscreteValueVect const&, RDKit::DiscreteValueVect const&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in DiscreteValueVect.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<boost::python::tuple (*)(RDKit::DiscreteValueVect const&), boost::python::default_call_policies, boost::mpl::vector2<boost::python::tuple, RDKit::DiscreteValueVect const&>, mpl_::int_<0> >(boost::python::tuple (*)(RDKit::DiscreteValueVect const&), boost::python::default_call_policies const&, boost::mpl::vector2<boost::python::tuple, RDKit::DiscreteValueVect const&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in DiscreteValueVect.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<unsigned int (RDKit::DiscreteValueVect::*)() const, boost::python::default_call_policies, boost::mpl::vector2<unsigned int, RDKit::DiscreteValueVect&>, mpl_::int_<0> >(unsigned int (RDKit::DiscreteValueVect::*)() const, boost::python::default_call_policies const&, boost::mpl::vector2<unsigned int, RDKit::DiscreteValueVect&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in DiscreteValueVect.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<RDKit::DiscreteValueVect::DiscreteValueType (RDKit::DiscreteValueVect::*)() const, boost::python::default_call_policies, boost::mpl::vector2<RDKit::DiscreteValueVect::DiscreteValueType, RDKit::DiscreteValueVect&>, mpl_::int_<0> >(RDKit::DiscreteValueVect::DiscreteValueType (RDKit::DiscreteValueVect::*)() const, boost::python::default_call_policies const&, boost::mpl::vector2<RDKit::DiscreteValueVect::DiscreteValueType, RDKit::DiscreteValueVect&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in DiscreteValueVect.cpp.o
boost::python::api::object boost::python::detail::make_function_aux<_object* (*)(boost::python::back_reference<RDKit::DiscreteValueVect&>, RDKit::DiscreteValueVect const&), boost::python::default_call_policies, boost::mpl::vector3<_object*, boost::python::back_reference<RDKit::DiscreteValueVect&>, RDKit::DiscreteValueVect const&>, mpl_::int_<0> >(_object* (*)(boost::python::back_reference<RDKit::DiscreteValueVect&>, RDKit::DiscreteValueVect const&), boost::python::default_call_policies const&, boost::mpl::vector3<_object*, boost::python::back_reference<RDKit::DiscreteValueVect&>, RDKit::DiscreteValueVect const&> const&, std::pair<boost::python::detail::keyword const*, boost::python::detail::keyword const*> const&, mpl_::int_<0>) in DiscreteValueVect.cpp.o
...
"boost::python::objects::register_dynamic_id_aux(boost::python::type_info, std::pair<void*, boost::python::type_info> (*)(void*))", referenced from:
discreteValVec_wrapper::wrap() in DiscreteValueVect.cpp.o
void sparseIntVec_wrapper::wrapOne<int>(char const*) in SparseIntVect.cpp.o
void sparseIntVec_wrapper::wrapOne<long long>(char const*) in SparseIntVect.cpp.o
void sparseIntVec_wrapper::wrapOne<unsigned int>(char const*) in SparseIntVect.cpp.o
void sparseIntVec_wrapper::wrapOne<unsigned long long>(char const*) in SparseIntVect.cpp.o
SBV_wrapper::wrap() in wrap_SparseBV.cpp.o
EBV_wrapper::wrap() in wrap_ExplicitBV.cpp.o
...
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make[2]: *** [rdkit/DataStructs/cDataStructs.so] Error 1
make[1]: *** [Code/DataStructs/Wrap/CMakeFiles/cDataStructs.dir/all] Error 2
make: *** [all] Error 2
HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/homebrew.git
HEAD: ace0d8f92a361266a44c970a6601fa1437e9327a
Last commit: 5 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
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OS X: 10.10.3-x86_64
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CLT: 6.3.2.0.1.1431401888
GCC-4.2: build 0
Clang: 6.1 build 602
X11: 2.7.7 => /opt/X11
System Ruby: 2.0.0-p481
Perl: /usr/bin/perl
Python: /usr/bin/python
Ruby: /usr/bin/ruby
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HOMEBREW_CC: clang
HOMEBREW_CXX: clang++
MAKEFLAGS: -j8
CMAKE_PREFIX_PATH: /usr/local
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CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Library/ENV/pkgconfig/10.10
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PATH: /usr/local/Library/ENV/4.3:/usr/local/opt/cmake/bin:/usr/local/opt/wget/bin:/usr/bin:/bin:/usr/sbin:/sbin
clang called with: -DRDK_64BIT_BUILD -Dhc_EXPORTS -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/hc.c
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superenv executed: clang -pipe -w -Os -march=native -DRDK_64BIT_BUILD -Dhc_EXPORTS -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/hc.dir/hc.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/hc.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
clang called with: -DRDK_64BIT_BUILD -Dhc_EXPORTS -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/hcdriver.c
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superenv executed: clang -pipe -w -Os -march=native -DRDK_64BIT_BUILD -Dhc_EXPORTS -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/hc.dir/hcdriver.c.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/ML/Cluster/Murtagh/hcdriver.c -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
clang called with: -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2015.3.1 -o ../../../../lib/libhc.2015.03.1.dylib -install_name /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/lib/libhc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o
superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries
superenv executed: clang -pipe -w -Os -march=native -dynamiclib -Wl,-headerpad_max_install_names -compatibility_version 1.0.0 -current_version 2015.3.1 -o ../../../../lib/libhc.2015.03.1.dylib -install_name /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/lib/libhc.1.dylib CMakeFiles/hc.dir/hc.c.o CMakeFiles/hc.dir/hcdriver.c.o -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers -L/usr/local/lib -L/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries -Wl,-headerpad_max_install_names
clang++ called with: -DChemicalFeatures_EXPORTS -DRDK_64BIT_BUILD -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/ChemicalFeatures.dir/FreeChemicalFeature.cpp.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/ChemicalFeatures/FreeChemicalFeature.cpp
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clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/RDGeneral/utils.cpp
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superenv executed: clang++ -pipe -w -Os -march=native -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/RDGeneral.dir/utils.cpp.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/RDGeneral/utils.cpp -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers
clang++ called with: -DRDGeneral_EXPORTS -DRDK_64BIT_BUILD -fPIC -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7 -I/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include -I/usr/local/include -I/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code -Wno-array-bounds -fPIC -o CMakeFiles/RDGeneral.dir/Invariant.cpp.o -c /tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1/Code/RDGeneral/Invariant.cpp
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//Add module rdMolAlign
PYTHON_ENABLE_MODULE_rdMolAlign:BOOL=ON
//Add module rdMolCatalog
PYTHON_ENABLE_MODULE_rdMolCatalog:BOOL=ON
//Add module rdMolChemicalFeatures
PYTHON_ENABLE_MODULE_rdMolChemicalFeatures:BOOL=ON
//Add module rdMolDescriptors
PYTHON_ENABLE_MODULE_rdMolDescriptors:BOOL=ON
//Add module rdMolDraw2D
PYTHON_ENABLE_MODULE_rdMolDraw2D:BOOL=ON
//Add module rdMolHash
PYTHON_ENABLE_MODULE_rdMolHash:BOOL=ON
//Add module rdMolTransforms
PYTHON_ENABLE_MODULE_rdMolTransforms:BOOL=ON
//Add module rdPartialCharges
PYTHON_ENABLE_MODULE_rdPartialCharges:BOOL=ON
//Add module rdShapeHelpers
PYTHON_ENABLE_MODULE_rdShapeHelpers:BOOL=ON
//Add module rdSimDivPickers
PYTHON_ENABLE_MODULE_rdSimDivPickers:BOOL=ON
//Add module rdchem
PYTHON_ENABLE_MODULE_rdchem:BOOL=ON
//Add module rdfragcatalog
PYTHON_ENABLE_MODULE_rdfragcatalog:BOOL=ON
//Add module rdmolfiles
PYTHON_ENABLE_MODULE_rdmolfiles:BOOL=ON
//Add module rdmolops
PYTHON_ENABLE_MODULE_rdmolops:BOOL=ON
//Add module rdqueries
PYTHON_ENABLE_MODULE_rdqueries:BOOL=ON
//Path to a program.
PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python
//Path to a file.
PYTHON_INCLUDE_DIR:PATH=/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
//Path to a library.
PYTHON_LIBRARY:FILEPATH=/System/Library/Frameworks/Python.framework/Versions/2.7/Python
//Path to a library.
PYTHON_LIBRARY_DEBUG:FILEPATH=PYTHON_LIBRARY_DEBUG-NOTFOUND
//Add module Clustering shared
PYTHON_MODULE_Clustering_BUILD_SHARED:BOOL=ON
//Add module DistGeom shared
PYTHON_MODULE_DistGeom_BUILD_SHARED:BOOL=ON
//Add module cDataStructs shared
PYTHON_MODULE_cDataStructs_BUILD_SHARED:BOOL=ON
//Add module cQuantize shared
PYTHON_MODULE_cQuantize_BUILD_SHARED:BOOL=ON
//Add module rdAlignment shared
PYTHON_MODULE_rdAlignment_BUILD_SHARED:BOOL=ON
//Add module rdBase shared
PYTHON_MODULE_rdBase_BUILD_SHARED:BOOL=ON
//Add module rdChemReactions shared
PYTHON_MODULE_rdChemReactions_BUILD_SHARED:BOOL=ON
//Add module rdChemicalFeatures shared
PYTHON_MODULE_rdChemicalFeatures_BUILD_SHARED:BOOL=ON
//Add module rdDepictor shared
PYTHON_MODULE_rdDepictor_BUILD_SHARED:BOOL=ON
//Add module rdDistGeom shared
PYTHON_MODULE_rdDistGeom_BUILD_SHARED:BOOL=ON
//Add module rdFMCS shared
PYTHON_MODULE_rdFMCS_BUILD_SHARED:BOOL=ON
//Add module rdForceFieldHelpers shared
PYTHON_MODULE_rdForceFieldHelpers_BUILD_SHARED:BOOL=ON
//Add module rdForceField shared
PYTHON_MODULE_rdForceField_BUILD_SHARED:BOOL=ON
//Add module rdGeometry shared
PYTHON_MODULE_rdGeometry_BUILD_SHARED:BOOL=ON
//Add module rdInfoTheory shared
PYTHON_MODULE_rdInfoTheory_BUILD_SHARED:BOOL=ON
//Add module rdMetricMatrixCalc shared
PYTHON_MODULE_rdMetricMatrixCalc_BUILD_SHARED:BOOL=ON
//Add module rdMolAlign shared
PYTHON_MODULE_rdMolAlign_BUILD_SHARED:BOOL=ON
//Add module rdMolCatalog shared
PYTHON_MODULE_rdMolCatalog_BUILD_SHARED:BOOL=ON
//Add module rdMolChemicalFeatures shared
PYTHON_MODULE_rdMolChemicalFeatures_BUILD_SHARED:BOOL=ON
//Add module rdMolDescriptors shared
PYTHON_MODULE_rdMolDescriptors_BUILD_SHARED:BOOL=ON
//Add module rdMolDraw2D shared
PYTHON_MODULE_rdMolDraw2D_BUILD_SHARED:BOOL=ON
//Add module rdMolHash shared
PYTHON_MODULE_rdMolHash_BUILD_SHARED:BOOL=ON
//Add module rdMolTransforms shared
PYTHON_MODULE_rdMolTransforms_BUILD_SHARED:BOOL=ON
//Add module rdPartialCharges shared
PYTHON_MODULE_rdPartialCharges_BUILD_SHARED:BOOL=ON
//Add module rdShapeHelpers shared
PYTHON_MODULE_rdShapeHelpers_BUILD_SHARED:BOOL=ON
//Add module rdSimDivPickers shared
PYTHON_MODULE_rdSimDivPickers_BUILD_SHARED:BOOL=ON
//Add module rdchem shared
PYTHON_MODULE_rdchem_BUILD_SHARED:BOOL=ON
//Add module rdfragcatalog shared
PYTHON_MODULE_rdfragcatalog_BUILD_SHARED:BOOL=ON
//Add module rdmolfiles shared
PYTHON_MODULE_rdmolfiles_BUILD_SHARED:BOOL=ON
//Add module rdmolops shared
PYTHON_MODULE_rdmolops_BUILD_SHARED:BOOL=ON
//Add module rdqueries shared
PYTHON_MODULE_rdqueries_BUILD_SHARED:BOOL=ON
//Directory where the arrayobject.h header file can be found. This
// file is part of the numarray package
PYTHON_NUMPY_INCLUDE_PATH:PATH=/System/Library/Frameworks/Python.framework/Versions/2.7/Extras/lib/python/numpy/core/include
//Dependencies for the target
PartialCharges_LIB_DEPENDS:STATIC=general;GraphMol;
//Dependencies for the target
RDBoost_LIB_DEPENDS:STATIC=general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for target
RDGeneral_LIB_DEPENDS:STATIC=
//Dependencies for the target
RDGeometryLib_LIB_DEPENDS:STATIC=general;DataStructs;general;RDGeneral;
//install support for the avalon toolkit. Use the variable AVALONTOOLS_DIR
// to set the location of the source.
RDK_BUILD_AVALON_SUPPORT:BOOL=OFF
//build support for Cairo drawing
RDK_BUILD_CAIRO_SUPPORT:BOOL=OFF
//build in support for compressed MolSuppliers
RDK_BUILD_COMPRESSED_SUPPLIERS:BOOL=OFF
//build the Contrib directory
RDK_BUILD_CONTRIB:BOOL=OFF
//build the c++ tests (disabing can speed up builds
RDK_BUILD_CPP_TESTS:BOOL=OFF
//build the rdkit inchi wrapper
RDK_BUILD_INCHI_SUPPORT:BOOL=OFF
//build the standard python wrappers
RDK_BUILD_PYTHON_WRAPPERS:BOOL=ON
//build the QT drawing demo
RDK_BUILD_QT_DEMO:BOOL=OFF
//build support for QT drawing
RDK_BUILD_QT_SUPPORT:BOOL=OFF
//include support for the SLN format
RDK_BUILD_SLN_SUPPORT:BOOL=ON
//build the experimental SWIG C# wrappers (does nothing if RDK_BUILD_SWIG_WRAPPERS
// is not set)
RDK_BUILD_SWIG_CSHARP_WRAPPER:BOOL=OFF
//build the SWIG JAVA wrappers (does nothing if RDK_BUILD_SWIG_WRAPPERS
// is not set)
RDK_BUILD_SWIG_JAVA_WRAPPER:BOOL=ON
//build the SWIG wrappers
RDK_BUILD_SWIG_WRAPPERS:BOOL=OFF
//enable thread-safe substructure searching (requires boost.thread)
RDK_BUILD_THREADSAFE_SSS:BOOL=OFF
//install the rdkit in the source tree (former behavior)
RDK_INSTALL_INTREE:BOOL=OFF
//install the rdkit static libraries
RDK_INSTALL_STATIC_LIBS:BOOL=OFF
//Use G(L)COV to compute test coverage
RDK_TEST_COVERAGE:BOOL=OFF
//run MMFF compliance tests (requires tar/gzip)
RDK_TEST_MMFF_COMPLIANCE:BOOL=ON
//run some tests of multithreading
RDK_TEST_MULTITHREADED:BOOL=OFF
//use flex/bison, if available, to build the SMILES/SMARTS/SLN
// parsers
RDK_USE_FLEXBISON:BOOL=OFF
//Value Computed by CMake
RDKit_BINARY_DIR:STATIC=/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1
//Value Computed by CMake
RDKit_SOURCE_DIR:STATIC=/tmp/rdkit20150610-31619-13xsvso/rdkit-Release_2015_03_1
//Dependencies for the target
ShapeHelpers_LIB_DEPENDS:STATIC=general;MolTransforms;
//Dependencies for the target
SimDivPickers_LIB_DEPENDS:STATIC=general;hc;general;RDGeneral;
//Dependencies for the target
SmilesParse_LIB_DEPENDS:STATIC=general;GraphMol;
//Dependencies for the target
Subgraphs_LIB_DEPENDS:STATIC=general;GraphMol;
//Dependencies for the target
SubstructMatch_LIB_DEPENDS:STATIC=general;GraphMol;
//Dependencies for the target
cDataStructs_LIB_DEPENDS:STATIC=general;RDGeneral;general;DataStructs;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
cQuantize_LIB_DEPENDS:STATIC=general;InfoTheory;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for target
hc_LIB_DEPENDS:STATIC=
//Dependencies for the target
rdAlignment_LIB_DEPENDS:STATIC=general;Alignment;general;RDGeneral;general;RDGeometryLib;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdBase_LIB_DEPENDS:STATIC=general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdChemReactions_LIB_DEPENDS:STATIC=general;ChemReactions;general;ChemTransforms;general;Descriptors;general;Fingerprints;general;Subgraphs;general;DataStructs;general;Depictor;general;FileParsers;general;SmilesParse;general;SubstructMatch;general;GraphMol;general;RDGeneral;general;RDGeometryLib;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdChemicalFeatures_LIB_DEPENDS:STATIC=general;ChemicalFeatures;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdDepictor_LIB_DEPENDS:STATIC=general;Depictor;general;SmilesParse;general;FileParsers;general;SubstructMatch;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdDistGeom_LIB_DEPENDS:STATIC=general;DistGeomHelpers;general;DistGeometry;general;FileParsers;general;MolTransforms;general;SmilesParse;general;SubstructMatch;general;ForceFieldHelpers;general;ForceField;general;MolAlign;general;Optimizer;general;EigenSolvers;general;Alignment;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdFMCS_LIB_DEPENDS:STATIC=general;FMCS;general;SmilesParse;general;SubstructMatch;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdForceFieldHelpers_LIB_DEPENDS:STATIC=general;ForceFieldHelpers;general;SmilesParse;general;SubstructMatch;general;GraphMol;general;ForceField;general;Optimizer;general;RDGeometryLib;general;RDGeneral;general;DataStructs;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdForceField_LIB_DEPENDS:STATIC=general;GraphMol;general;ForceField;general;ForceFieldHelpers;general;Optimizer;general;RDGeneral;general;RDGeometryLib;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdGeometry_LIB_DEPENDS:STATIC=general;RDGeometryLib;general;DataStructs;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdInfoTheory_LIB_DEPENDS:STATIC=general;InfoTheory;general;RDGeneral;general;DataStructs;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMetricMatrixCalc_LIB_DEPENDS:STATIC=general;RDGeneral;general;DataStructs;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolAlign_LIB_DEPENDS:STATIC=general;MolAlign;general;MolTransforms;general;ForceFieldHelpers;general;ForceField;general;EigenSolvers;general;Alignment;general;Optimizer;general;SubstructMatch;general;GraphMol;general;RDGeneral;general;RDGeometryLib;general;DataStructs;general;Descriptors;general;SmilesParse;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolCatalog_LIB_DEPENDS:STATIC=general;MolCatalog;general;FileParsers;general;Catalogs;general;SmilesParse;general;GraphMol;general;DataStructs;general;RDGeneral;general;RDGeometryLib;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolChemicalFeatures_LIB_DEPENDS:STATIC=general;MolChemicalFeatures;general;Catalogs;general;SmilesParse;general;SubstructMatch;general;DataStructs;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolDescriptors_LIB_DEPENDS:STATIC=general;Descriptors;general;PartialCharges;general;Fingerprints;general;FileParsers;general;SmilesParse;general;Subgraphs;general;SubstructMatch;general;GraphMol;general;DataStructs;general;RDGeneral;general;RDGeometryLib;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolDraw2D_LIB_DEPENDS:STATIC=general;MolDraw2D;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolHash_LIB_DEPENDS:STATIC=general;MolHash;general;Descriptors;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdMolTransforms_LIB_DEPENDS:STATIC=general;MolTransforms;general;EigenSolvers;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdPartialCharges_LIB_DEPENDS:STATIC=general;PartialCharges;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;DataStructs;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdShapeHelpers_LIB_DEPENDS:STATIC=general;ShapeHelpers;general;MolTransforms;general;EigenSolvers;general;DataStructs;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdSimDivPickers_LIB_DEPENDS:STATIC=general;SimDivPickers;general;hc;general;DataStructs;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdchem_LIB_DEPENDS:STATIC=general;SmilesParse;general;ChemTransforms;general;SubstructMatch;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdfragcatalog_LIB_DEPENDS:STATIC=general;FragCatalog;general;Subgraphs;general;SubstructMatch;general;SmilesParse;general;Catalogs;general;FileParsers;general;GraphMol;general;DataStructs;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdmolfiles_LIB_DEPENDS:STATIC=general;SmilesParse;general;FileParsers;general;GraphMol;general;RDGeometryLib;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdmolops_LIB_DEPENDS:STATIC=general;MolDraw2D;general;Depictor;general;FileParsers;general;SubstructMatch;general;Fingerprints;general;ChemTransforms;general;Catalogs;general;Subgraphs;general;SmilesParse;general;GraphMol;general;RDGeometryLib;general;DataStructs;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
//Dependencies for the target
rdqueries_LIB_DEPENDS:STATIC=general;GraphMol;general;RDGeometryLib;general;DataStructs;general;RDGeneral;general;RDBoost;general;/System/Library/Frameworks/Python.framework/Versions/2.7/Python;general;/usr/local/lib/libboost_python-mt.dylib;
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HOMEBREW_VERSION: 0.9.5
ORIGIN: https://github.com/Homebrew/homebrew.git
HEAD: ace0d8f92a361266a44c970a6601fa1437e9327a
Last commit: 5 hours ago
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar
CPU: 8-core 64-bit ivybridge
OS X: 10.10.3-x86_64
Xcode: 6.3.2
CLT: 6.3.2.0.1.1431401888
Clang: 6.1 build 602
X11: 2.7.7 => /opt/X11
System Ruby: 2.0.0-p481
Perl: /usr/bin/perl
Python: /usr/bin/python
Ruby: /usr/bin/ruby
Java: 1.7.0_51
Your system is ready to brew.
Formula: rdkit
Tap: rdkit/homebrew-rdkit
Path: /usr/local/Library/Taps/rdkit/homebrew-rdkit/Formula/rdkit.rb
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