scikit_learn_output_test_new.txt

nosetests sklearn/
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/feature_selection/selector_mixin.py:7: DeprecationWarning: 
sklearn.feature_selection.selector_mixin.SelectorMixin has been renamed sklearn.
feature_selection.from_model._LearntSelectorMixin, and this alias will be remove
d in version 0.16
  DeprecationWarning)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/pls.py:7: DeprecationWarning: This module has been moved to
 cross_decomposition and will be removed in 0.16
  "removed in 0.16", DeprecationWarning)
......./home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/sci
py/sparse/linalg/eigen/arpack/arpack.py:1652: RuntimeWarning: invalid value enco
untered in sqrt
  s = np.sqrt(eigvals)
..../home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/scipy/
sparse/compressed.py:209: SparseEfficiencyWarning: Comparing a sparse matrix wit
h a nonzero scalar using != is inefficient, try using == instead.
  " is inefficient, try using == instead.", SparseEfficiencyWarning)
E................................................................../home/myacct/
ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-learn-0.14.1/
sklearn/manifold/spectral_embedding_.py:226: UserWarning: Graph is not fully con
nected, spectral embedding may not work as expected.
  warnings.warn("Graph is not fully connected, spectral embedding"
......./home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/
scikit-learn-0.14.1/sklearn/covariance/graph_lasso_.py:193: RuntimeWarning: inva
lid value encountered in multiply
  * coefs)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:195: RuntimeWarning: invalid val
ue encountered in multiply
  * coefs)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:46: RuntimeWarning: invalid valu
e encountered in absolute
  gap += alpha * (np.abs(precision_).sum()
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:47: RuntimeWarning: invalid valu
e encountered in absolute
  - np.abs(np.diag(precision_)).sum())
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:33: RuntimeWarning: invalid valu
e encountered in absolute
  cost += alpha * (np.abs(precision_).sum()
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:34: RuntimeWarning: invalid valu
e encountered in absolute
  - np.abs(np.diag(precision_)).sum())
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/covariance/graph_lasso_.py:207: RuntimeWarning: invalid val
ue encountered in absolute
  if np.abs(d_gap) < tol:
/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/numpy/lina
lg/linalg.py:1664: RuntimeWarning: invalid value encountered in absolute
  absd = absolute(d)
........................SS..............S.......................................
.......................S........./home/myacct/ZZ_NewPythonInstall/SRC_Step_3_pyt
hon2y3_packages/ICA_stuff/scikit-learn-0.14.1/sklearn/decomposition/fastica_.py:
269: UserWarning: Ignoring n_components with whiten=False.
  warnings.warn('Ignoring n_components with whiten=False.')
.............................................../home/myacct/ZZ_NewPythonInstall/
SRC_Step_3_python2y3_packages/ICA_stuff/scikit-learn-0.14.1/sklearn/decompositio
n/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be
 removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
../home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/sciki
t-learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: c
oef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff/scikit-
learn-0.14.1/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coe
f_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
...S..........................................................SSS...............
................../home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages
/ICA_stuff/scikit-learn-0.14.1/sklearn/externals/joblib/test/test_func_inspect.p
y:122: UserWarning: Cannot inspect object <functools.partial object at 0x45a1b50
>, ignore list will not work.
  nose.tools.assert_equal(filter_args(ff, ['y'], (1, )),
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
......................................................................FF........
................................................................................
...............................S................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
................................................................................
............................SSS....S....S.......................................
...........................................................................
======================================================================
ERROR: sklearn.cluster.bicluster.tests.test_utils.test_get_submatrix
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/no
se/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff
/scikit-learn-0.14.1/sklearn/cluster/bicluster/tests/test_utils.py", line 43, in
 test_get_submatrix
    assert_true(np.all(X != -1))
  File "/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/unittest/case.py
", line 418, in assertTrue
    if not expr:
  File "/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/sc
ipy/sparse/base.py", line 183, in __bool__
    raise ValueError("The truth value of an array with more than one "
ValueError: The truth value of an array with more than one element is ambiguous.
 Use a.any() or a.all().

======================================================================
FAIL: sklearn.feature_extraction.tests.test_image.test_connect_regions
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/no
se/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff
/scikit-learn-0.14.1/sklearn/feature_extraction/tests/test_image.py", line 63, i
n test_connect_regions
    assert_equal(ndimage.label(mask)[1], connected_components(graph)[0])
AssertionError: 777 != 767
    '777 != 767' = '%s != %s' % (safe_repr(777), safe_repr(767))
    '777 != 767' = self._formatMessage('777 != 767', '777 != 767')
>>  raise self.failureException('777 != 767')
    

======================================================================
FAIL: sklearn.feature_extraction.tests.test_image.test_connect_regions_with_grid
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/home/myacct/myProg/Python273GNU/Linux64b/lib/python2.7/site-packages/no
se/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/home/myacct/ZZ_NewPythonInstall/SRC_Step_3_python2y3_packages/ICA_stuff
/scikit-learn-0.14.1/sklearn/feature_extraction/tests/test_image.py", line 70, i
n test_connect_regions_with_grid
    assert_equal(ndimage.label(mask)[1], connected_components(graph)[0])
AssertionError: 777 != 767
    '777 != 767' = '%s != %s' % (safe_repr(777), safe_repr(767))
    '777 != 767' = self._formatMessage('777 != 767', '777 != 767')
>>  raise self.failureException('777 != 767')
    

----------------------------------------------------------------------
Ran 1860 tests in 137.411s

FAILED (SKIP=14, errors=1, failures=2)