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file1.txt

#
# This EasyBuild config file for R was generated with generateEasyConfig.R
#

name = 'R'
version = '3.2.3'
versionsuffix = '-bare'
homepage = 'http://www.r-project.org/'
description = """R is a free software environment for statistical computing and graphics."""
moduleclass = 'lang'
toolchain = {'name': 'goolf', 'version': '1.7.20'}

sources = [SOURCE_TAR_GZ]
source_urls = ['http://cran.us.r-project.org/src/base/R-%(version_major)s']

#
# Configure options.
#
preconfigopts = 'BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"'
configopts = '--with-lapack --with-blas --with-pic --enable-threads --with-x=yes --enable-R-shlib'
configopts += ' --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh '
#
# Enable graphics capabilities for plotting.
#
configopts += ' --with-cairo --with-libpng --with-jpeglib --with-libtiff'
#
# Some recommended packages may fail in a parallel build (e.g. Matrix) and we're installing them anyway below.
#
configopts += ' --with-recommended-packages=no'

dependencies = [
    ('libreadline', '6.3'),
    ('ncurses', '5.9'),
    ('libpng', '1.6.18'),            # For plotting in R
    ('libjpeg-turbo', '1.4.1'),      # For plotting in R
    ('LibTIFF', '4.0.4'),            # For plotting in R
    ('Tcl', '8.6.4'),                # For Tcl/Tk
    ('Tk', '8.6.4'),      	     # For Tcl/Tk
    ('zlib', '1.2.8'),  
    ('bzip2', '1.0.6'),  
    ('cURL', '7.40.0', '', True),    # Compile Curl with dummy toolchain (system gcc)
    ('libxml2', '2.9.3'),            # For R packages which require XML support
    #('cairo', '1.14.2'),             # For plotting in R - installed as rpm
    ('XZ', '5.2.2'),             
    ('Java', '1.7.0_80', '', True),  # Java bindings are built if Java is found, might as well provide it.
]

osdependencies = [('cairo-devel')]

package_name_tmpl = '%(name)s_%(version)s.tar.gz'

cran_options = {
    'source_urls': [
        'http://cran.r-project.org/src/contrib/',
        'http://cran.r-project.org/src/contrib/Archive/%(name)s',
    ],
    'source_tmpl': package_name_tmpl,
}

bioconductor_options = {
    'source_urls': [
        'http://www.bioconductor.org/packages/release/bioc/src/contrib/',
        'http://www.bioconductor.org/packages/release/data/annotation/src/contrib/',
        'http://www.bioconductor.org/packages/release/data/experiment/src/contrib/',
        'https://bioconductor.org/packages/3.2/bioc/src/contrib/',
        'https://bioconductor.org/packages/3.2/data/annotation/src/contrib/',
        'https://bioconductor.org/packages/3.2/data/experiment/src/contrib/',
        'https://bioconductor.org/packages/3.2/extra/src/contrib/',
    ],
    'source_tmpl': package_name_tmpl,
}


#
# R package list.
#   * Order of packages is important!
#   * Packages should be specified with fixed versions!
#
exts_list = [
        # 
        # Default libraries; only here to sanity check their presence.
        #
        'base',
        'compiler',
        'datasets',
        'graphics',
        'grDevices',
        'grid',
        'methods',
        'parallel',
        'splines',
        'stats',
        'stats4',
        'tcltk',
        'tools',
        'utils',
        #
        # These are the packages installed when doing
        # --with-recommended-packages=yes
        #
        ('boot', '1.3-17', cran_options),
        ('MASS', '7.3-45', cran_options),
        ('class', '7.3-14', cran_options),
        ('cluster', '2.0.3', cran_options),
        ('codetools', '0.2-14', cran_options),
        ('foreign', '0.8-66', cran_options),
        ('KernSmooth', '2.23-15', cran_options),
        ('lattice', '0.20-33', cran_options),
        ('logging', '0.7-103', cran_options),
        ('magrittr', '1.5', cran_options),
        ('Matrix', '1.2-3', cran_options),
        ('nlme', '3.1-122', cran_options),
        ('mgcv', '1.8-9', cran_options),
        ('nnet', '7.3-11', cran_options),
        ('rpart', '4.1-10', cran_options),
        ('spatial', '7.3-11', cran_options),
        ('stringi', '1.0-1', cran_options),
        ('stringr', '1.0.0', cran_options),
        ('survival', '2.38-3', cran_options),
]