/after running the relocate script as root

## after running the relocate script as root
sudo chown -R USER:USER .sage

## error message
Rewriting paths for your new installation directory
===================================================

This might take a few minutes but only has to be done once.

patching /usr/lib/sagemath/src/build/cythonized/sage/rings/real_arb.c
Traceback (most recent call last):
  File "/usr/lib/sagemath/relocate-once.py", line 85, in <module>
    p('src/build/cythonized/sage/rings/real_arb.c').substitute().save()
  File "/usr/lib/sagemath/relocate-once.py", line 70, in __call__
    return FilePatch(self, filename)
  File "/usr/lib/sagemath/relocate-once.py", line 21, in __init__
    self.st = os.stat(filename)
OSError: [Errno 2] No such file or directory: '/usr/lib/sagemath/src/build/cythonized/sage/rings/real_arb.c'
┌────────────────────────────────────────────────────────────────────┐
│ SageMath Version 7.0, Release Date: 2016-01-19                     │
│ Type "notebook()" for the browser-based notebook interface.        │
│ Type "help()" for help.                                            │
└────────────────────────────────────────────────────────────────────┘

## relocate-once.py
#!/usr/bin/env python
"""
Rewrite Paths

This script can be used exactly once to move the directory to a
different location.
"""

import os
import os.path

ROOT_PATH = os.path.abspath(os.path.dirname(__file__))


class FilePatch(object):

    def __init__(self, search_and_replace, filename):
        self.search = search_and_replace.search
        self.replace = search_and_replace.replace
        self.filename = filename

	if os.path.isfile(self.filename):
		self.skip = False

        	self.st = os.stat(filename)
	        with open(self.filename, 'rb') as f:
	            self.content = f.read()
	else:
		self.content = ""
		self.skip = True
		print "not found {0}".format(self.filename)

    def substitute(self):
        """
        Perform the string substitution, changing the file length
        """
	if not self.skip:
	        self.content = self.content.replace(self.search, self.replace)

        return self

    def patch(self, start, end):
        """
        Perfom substitution in a fixed-size region of the file

        The file length is unchanged; If necessary the region is zero
        padded.

        Args:
            start(int): The start position of the string to replace
            end(int): The position of the terminating null
        """
	if self.skip:
		return self

        assert self.content[end:end+1] == b'\0'
        region = self.content[start:end]
        substituted = region.replace(self.search, self.replace)
        substituted+= b'\0' * (end - start - len(substituted))
        self.content = self.content[:start] + substituted + self.content[end:]
        return self

    def save(self):
	if self.skip:
		return

        with open(self.filename, 'wb') as f:
            f.write(self.content)
        os.utime(self.filename, (self.st.st_atime, self.st.st_mtime))


class SearchAndReplace(object):

    def __init__(self, search, replace):
        self.search = search.encode('utf-8')
        self.replace = replace.encode('utf-8')
        if len(self.search) < len(self.replace):
            raise RuntimeError(
                'path can be at most {0} characters long, but {1} has {2} characters'.format(
                    len(self.search), self.replace, len(self.replace)))

    def __call__(self, filename):
        filename = os.path.join(self.replace, filename)
        print('patching {0}'.format(filename))
        return FilePatch(self, filename)


print("""
Rewriting paths for your new installation directory
===================================================

This might take a few minutes but only has to be done once.
""")

p = SearchAndReplace('/mnt/highperf/buildbot/slave/binary_pkg/build/source/SageMath/jc4b6yulaujayb9sr94ia88eourzeqip0oidma', ROOT_PATH)

p('src/build/cythonized/sage/rings/real_arb.c').substitute().save()
p('local/bin/dbmsr.so').patch(2815, 2925).patch(43426, 43579).patch(44761, 44914).patch(44963, 45087).patch(47854, 48019).save()
p('local/lib/python2.7/site-packages/sage/matrix/misc.so').patch(6825, 6935).patch(129328, 129468).patch(147392, 147517).patch(266682, 266822).patch(268472, 268605).patch(268606, 268746).patch(268747, 268870).patch(268871, 269024).patch(269073, 269197).patch(269198, 269312).patch(269313, 269433).patch(269434, 269553).patch(269554, 269672).patch(269673, 269787).patch(310453, 310557).patch(311850, 311990).save()
p('local/lib/python2.7/site-packages/sage/rings/real_lazy.so').patch(9493, 9603).patch(216696, 216840).patch(280896, 281025).patch(526903, 527047).patch(528670, 528802).patch(528803, 528917).patch(528918, 529071).patch(529154, 529278).patch(584203, 584347).patch(605367, 605471).save()
p('local/lib/python2.7/site-packages/sage/structure/parent.so').patch(8875, 8985).patch(304976, 305121).patch(396672, 396802).patch(691892, 692037).patch(693765, 693901).patch(693902, 694042).patch(694043, 694157).patch(694158, 694311).patch(694394, 694518).patch(694519, 694642).patch(791336, 791481).patch(794140, 794244).save()
p('local/include/atlas/atlas_dsyr_L2.h').substitute().save()
p('src/build/cython_debug/cython_debug_info_sage.misc.nested_class').substitute().save()
p('src/build/cython_debug/cython_debug_info_sage.combinat.degree_sequences').substitute().save()
p('local/share/terminfo/v/vt320-w').patch(1151, 1276).save()
p('src/build/cython_debug/cython_debug_info_sage.quivers.algebra_elements').substitute().save()
p('src/build/cythonized/sage/groups/perm_gps/partn_ref/double_coset.c').substitute().save()
p('src/build/cythonized/sage/rings/padics/padic_ZZ_pX_element.cpp').substitute().save()
p('local/lib/python2.7/site-packages/sage/graphs/genus.so').patch(5868, 5978).patch(62184, 62325).patch(75648, 75774).patch(138441, 138582).patch(140307, 140440).patch(140441, 140581).patch(140582, 140705).patch(140706, 140859).patch(140942, 141066).patch(141067, 141181).patch(154585, 154689).patch(160594, 160735).save()
p('local/lib/python2.7/lib-dynload/zlib.so').patch(2712, 2822).patch(42164, 42319).patch(42320, 42473).patch(42530, 42644).patch(45826, 45994).patch(47090, 47237).save()
p('local/libexec/git-core/git-credential-cache').patch(8211, 8321).patch(643368, 643488).patch(651272, 651378).patch(651384, 651507).patch(669440, 669564).patch(1284453, 1284559).patch(2362696, 2362849).patch(2363399, 2363552).patch(2363986, 2364139).patch(2365776, 2365929).patch(2368065, 2368218).patch(2369850, 2370003).patch(2372004, 2372157).patch(2372179, 2372293).patch(2378888, 2379041).patch(2381880, 2382033).patch(2382393, 2382546).patch(2384865, 2385018).patch(2385019, 2385133).patch(2386077, 2386230).patch(2387026, 2387179).patch(2387710, 2387863).patch(2388523, 2388676).patch(2389664, 2389817).patch(2390660, 2390813).patch(2392825, 2392978).patch(2393356, 2393509).patch(2394828, 2394981).patch(2396311, 2396464).patch(2396906, 2397059).patch(2397073, 2397187).patch(2397880, 2398033).patch(2398588, 2398741).patch(2398996, 2399149).patch(2399775, 2399928).patch(2400263, 2400416).patch(2400866, 2401019).patch(2401248, 2401401).patch(2401423, 2401537).patch(2402163, 2402316).patch(2404152, 2404305).patch(2407910, 2408063).patch(2412956, 2413109).patch(2415575, 2415728).patch(2416117, 2416270).patch(2416292, 2416406).patch(2416952, 2417105).patch(2417239, 2417392).patch(2419327, 2419480).patch(2424884, 2425037).patch(2425670, 2425823).patch(2428106, 2428259).patch(2428916, 2429069).patch(2429500, 2429653).patch(2430222, 2430375).patch(2431091, 2431244).patch(2431903, 2432056).patch(2432335, 2432488).patch(2433697, 2433850).patch(2434475, 2434628).patch(2435289, 2435442).patch(2435770, 2435923).patch(2436601, 2436754).patch(2437711, 2437864).patch(2437899, 2438013).patch(2438554, 2438707).patch(2439238, 2439391).patch(2440482, 2440635).patch(2441013, 2441166).patch(2441696, 2441849).patch(2442661, 2442814).patch(2444796, 2444949).patch(2449834, 2449987).patch(2457927, 2458080).patch(2462885, 2463038).patch(2463413, 2463566).patch(2464273, 2464426).patch(2470386, 2470539).patch(2471091, 2471244).patch(2473108, 2473261).patch(2474242, 2474395).patch(2475032, 2475185).patch(2476478, 2476631).patch(2476860, 2477013).patch(2478079, 2478232).patch(2479297, 2479450).patch(2480907, 2481060).patch(2482915, 2483068).patch(2483446, 2483599).patch(2483621, 2483735).patch(2494184, 2494337).patch(2496500, 2496653).patch(2499898, 2500051).patch(2501428, 2501581).patch(2504148, 2504301).patch(2505024, 2505177).patch(2505954, 2506107).patch(2506987, 2507140).patch(2509169, 2509322).patch(2512103, 2512256).patch(2512700, 2512853).patch(2513445, 2513598).patch(2514057, 2514210).patch(2515349, 2515502).patch(2516164, 2516317).patch(2520195, 2520348).patch(2521169, 2521322).patch(2524236, 2524389).patch(2524825, 2524978).patch(2527493, 2527646).patch(2528866, 2529019).patch(2529537, 2529690).patch(2530651, 2530804).patch(2531142, 2531295).patch(2532111, 2532264).patch(2535577, 2535730).patch(2536273, 2536426).patch(2536901, 2537054).patch(2537514, 2537667).patch(2538368, 2538521).patch(2539852, 2540005).patch(2540879, 2541032).patch(2542685, 2542838).patch(2543518, 2543671).patch(2548058, 2548211).patch(2548735, 2548888).patch(2550933, 2551086).patch(2554614, 2554767).patch(2555711, 2555864).patch(2556728, 2556881).patch(2557977, 2558130).patch(2558940, 2559093).patch(2560173, 2560326).patch(2560992, 2561145).patch(2562510, 2562663).patch(2563193, 2563346).patch(2564806, 2564945).save()
p('local/lib/python2.7/lib-dynload/_collections.so').patch(4155, 4265).patch(63605, 63760).patch(63761, 63914).patch(70646, 70793).patch(72201, 72377).save()
p('local/lib/libarb.so').patch(86093, 86203).patch(8084259, 8084379).patch(8084380, 8084522).patch(8084523, 8084676).patch(8084725, 8084839).patch(8085061, 8085203).patch(8085204, 8085324).patch(8085325, 8085478).patch(8085527, 8085641).patch(8086118, 8086260).patch(8086261, 8086381).patch(8086382, 8086535).patch(8086584, 8086698).patch(8087009, 8087151).patch(8087152, 8087272).patch(8087273, 8087426).patch(8087475, 8087589).patch(8087812, 8087926).patch(8087927, 8088069).patch(8088070, 8088190).patch(8088191, 8088344).patch(8089658, 8089800).patch(8089801, 8089921).patch(8089922, 8090036).patch(8090037, 8090190).patch(8090779, 8090921).patch(8090922, 8091042).patch(8091043, 8091196).patch(8091245, 8091359).patch(8091613, 8091755).patch(8091756, 8091876).patch(8091877, 8092030).patch(8092079, 8092193).patch(8092447, 8092567).patch(8092568, 8092710).patch(8092711, 8092864).patch(8092913, 8093027).patch(8093554, 8093696).patch(8093697, 8093817).patch(8093818, 8093971).patch(8094020, 8094134).patch(8094394, 8094536).patch(8094537, 8094657).patch(8094658, 8094811).patch(8094860, 8094974).patch(8095379, 8095521).patch(8095522, 8095642).patch(8095643, 8095796).patch(8095845, 8095959).patch(8096303, 8096445).patch(8096446, 8096566).patch(8096567, 8096720).patch(8096769, 8096883).patch(8097318, 8097460).patch(8097461, 8097581).patch(8097582, 8097735).patch(8097784, 8097898).patch(8098239, 8098381).patch(8098382, 8098502).patch(8098503, 8098656).patch(8098705, 8098819).patch(8099072, 8099214).patch(8099215, 8099335).patch(8099336, 8099450).patch(8099451, 8099604).patch(8101142, 8101262).patch(8101263, 8101405).patch(8101406, 8101520).patch(8101521, 8101674).patch(8102109, 8102251).patch(8102252, 8102372).patch(8102373, 8102526).patch(8102575, 8102689).patch(8103272, 8103414).patch(8103415, 8103568).patch(8103617, 8103731).patch(8103732, 8103852).patch(8104041, 8104183).patch(8104184, 8104304).patch(8104305, 8104458).patch(8104507, 8104621).patch(8104892, 8105034).patch(8105035, 8105155).patch(8105156, 8105309).patch(8105358, 8105472).patch(8105850, 8105992).patch(8105993, 8106113).patch(8106114, 8106267).patch(8106316, 8106430).patch(8106629, 8106771).patch(8106772, 8106892).patch(8106893, 8107046).patch(8107095, 8107209).patch(8107522, 8107664).patch(8107665, 8107818).patch(8107867, 8107981).patch(8107982, 8108102).patch(8108319, 8108439).patch(8108440, 8108593).patch(8108642, 8108756).patch(8108757, 8108899).patch(8109102, 8109244).patch(8109245, 8109365).patch(8109366, 8109519).patch(8109568, 8109682).patch(8110333, 8110475).patch(8110476, 8110596).patch(8110597, 8110750).patch(8110799, 8110913).patch(8111381, 8111523).patch(8111524, 8111644).patch(8111645, 8111759).patch(8111760, 8111913).patch(8112596, 8112738).patch(8112739, 8112859).patch(8112860, 8113013).patch(8113062, 8113176).patch(8114099, 8114241).patch(8114242, 8114362).patch(8114363, 8114516).patch(8114565, 8114679).patch(8115020, 8115162).patch(8115163, 8115283).patch(8115284, 8115437).patch(8115486, 8115600).patch(8116003, 8116123).patch(8116124, 8116277).patch(8116326, 8116440).patch(8116662, 8116804).patch(8116805, 8116925).patch(8116926, 8117040).patch(8117041, 8117194).patch(8117800, 8117942).patch(8117943, 8118096).patch(8118145, 8118259).patch(8118260, 8118380).patch(8118572, 8118725).patch(8118774, 8118888).patch(8118889, 8119009).patch(8119010, 8119152).patch(8119310, 8119452).patch(8119453, 8119573).patch(8119574, 8119727).patch(8119776, 8119890).patch(8120299, 8120441).patch(8120442, 8120562).patch(8120563, 8120716).patch(8120765, 8120879).patch(8121380, 8121522).patch(8121523, 8121643).patch(8121644, 8121758).patch(8121759, 8121912).patch(8122538, 8122658).patch(8122659, 8122801).patch(8122802, 8122955).patch(8123004, 8123118).patch(8123673, 8123815).patch(8123816, 8123936).patch(8123937, 8124090).patch(8124139, 8124253).patch(8124635, 8124777).patch(8124778, 8124898).patch(8124899, 8125052).patch(8125101, 8125215).patch(8125426, 8125546).patch(8125547, 8125689).patch(8125690, 8125843).patch(8125892, 8126006).patch(8126365, 8126507).patch(8126508, 8126628).patch(8126629, 8126782).patch(8126831, 8126945).patch(8127610, 8127730).patch(8127731, 8127873).patch(8127874, 8128027).patch(8128076, 8128190).patch(8128673, 8128815).patch(8128816, 8128936).patch(8128937, 8129051).patch(8129052, 8129205).patch(8129648, 8129790).patch(8129791, 8129911).patch(8129912, 8130026).patch(8130027, 8130180).patch(8130875, 8131017).patch(8131018, 8131138).patch(8131139, 8131253).patch(8131254, 8131407).patch(8132209, 8132351).patch(8132352, 8132472).patch(8132473, 8132587).patch(8132588, 8132741).patch(8133790, 8133910).patch(8133911, 8134053).patch(8134054, 8134207).patch(8134256, 8134370).patch(8134897, 8135017).patch(8135018, 8135160).patch(8135161, 8135314).patch(8135363, 8135477).patch(8137389, 8137509).patch(8137510, 8137652).patch(8137653, 8137806).patch(8137855, 8137969).patch(8138204, 8138346).patch(8138382, 8138535).patch(8138536, 8138650).patch(8138664, 8138784).patch(8138987, 8139129).patch(8139130, 8139250).patch(8139286, 8139439).patch(8139440, 8139554).patch(8140844, 8140964).patch(8140965, 8141107).patch(8141108, 8141222).patch(8141258, 8141411).patch(8142853, 8142995).patch(8142996, 8143116).patch(8143152, 8143305).patch(8143306, 8143420).patch(8144527, 8144669).patch(8144670, 8144790).patch(8144826, 8144979).patch(8144980, 8145094).patch(8145505, 8145647).patch(8145648, 8145762).patch(8145798, 8145951).patch(8145965, 8146085).patch(8146431, 8146573).patch(8146574, 8146694).patch(8146730, 8146883).patch(8146884, 8146998).patch(8147330, 8147472).patch(8147473, 8147587).patch(8147623, 8147776).patch(8147790, 8147910).patch(8148197, 8148339).patch(8148340, 8148460).patch(8148496, 8148649).patch(8148650, 8148764).patch(8149094, 8149236).patch(8149237, 8149357).patch(8149393, 8149546).patch(8149547, 8149661).patch(8151675, 8151828).patch(8151829, 8151943).patch(8151957, 8152077).patch(8152078, 8152220).patch(8152452, 8152594).patch(8152595, 8152715).patch(8152716, 8152830).patch(8152866, 8153019).patch(8153802, 8153916).patch(8153917, 8154059).patch(8154095, 8154248).patch(8154262, 8154382).patch(8154618, 8154760).patch(8154761, 8154881).patch(8154917, 8155070).patch(8155071, 8155185).patch(8155619, 8155761).patch(8155762, 8155882).patch(8155918, 8156071).patch(8156072, 8156186).patch(8156470, 8156612).patch(8156613, 8156733).patch(8156769, 8156922).patch(8156923, 8157037).patch(8157357, 8157499).patch(8157500, 8157620).patch(8157656, 8157809).patch(8157810, 8157924).patch(8158224, 8158366).patch(8158367, 8158487).patch(8158488, 8158602).patch(8158638, 8158791).patch(8159354, 8159474).patch(8159475, 8159589).patch(8159625, 8159778).patch(8159792, 8159934).patch(8160301, 8160443).patch(8160444, 8160564).patch(8160600, 8160753).patch(8160754, 8160868).patch(8161379, 8161521).patch(8161557, 8161710).patch(8161711, 8161825).patch(8161839, 8161959).patch(8162185, 8162305).patch(8162341, 8162494).patch(8162495, 8162609).patch(8162623, 8162765).patch(8162967, 8163109).patch(8163110, 8163230).patch(8163266, 8163419).patch(8163420, 8163534).patch(8166175, 8166328).patch(8166329, 8166443).patch(8166457, 8166577).patch(8166578, 8166720).patch(8166917, 8167059).patch(8167095, 8167248).patch(8167249, 8167363).patch(8167377, 8167497).patch(8167854, 8167996).patch(8167997, 8168117).patch(8168153, 8168306).patch(8168307, 8168421).patch(8169642, 8169784).patch(8169785, 8169905).patch(8169941, 8170094).patch(8170095, 8170209).patch(8170554, 8170696).patch(8170732, 8170885).patch(8170886, 8171000).patch(8171014, 8171134).patch(8171621, 8171763).patch(8171799, 8171952).patch(8171953, 8172067).patch(8172081, 8172201).patch(8172577, 8172719).patch(8172720, 8172840).patch(8172876, 8173029).patch(8173030, 8173144).patch(8173422, 8173542).patch(8173543, 8173685).patch(8173721, 8173874).patch(8173875, 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p('src/build/cython_debug/cython_debug_info_sage.groups.libgap_wrapper').substitute().save()
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28229117).patch(28229166, 28229290).patch(28229291, 28229445).patch(28229446, 28229576).patch(28229577, 28229691).patch(28236355, 28236484).patch(28236485, 28236613).patch(28236614, 28236768).patch(28236769, 28236893).patch(28236894, 28237024).patch(28237025, 28237178).patch(28237227, 28237341).patch(28269345, 28269486).save()
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17474861).patch(17474862, 17474990).patch(17475001, 17475119).patch(17488261, 17488414).patch(17488463, 17488587).patch(17488957, 17489110).patch(17489159, 17489283).patch(17507423, 17507543).patch(17507567, 17507720).patch(17507721, 17507845).patch(17509941, 17510094).patch(17510143, 17510267).patch(17510530, 17510683).patch(17510719, 17510843).patch(17511866, 17512019).patch(17512033, 17512157).patch(17512412, 17512565).patch(17512566, 17512690).patch(17515650, 17515803).patch(17515804, 17515928).patch(17518295, 17518448).patch(17518497, 17518621).patch(17529063, 17529216).patch(17529265, 17529389).patch(17530836, 17530989).patch(17531038, 17531162).patch(17534602, 17534755).patch(17534804, 17534928).patch(17535985, 17536103).patch(17536125, 17536249).patch(17536250, 17536403).patch(17536417, 17536571).patch(17536572, 17536701).patch(17536702, 17536832).patch(17536833, 17536961).patch(17550529, 17550682).patch(17550731, 17550855).patch(17551426, 17551544).patch(17551545, 17551669).patch(17551670, 17551823).patch(17551872, 17552026).patch(17552027, 17552156).patch(17552157, 17552287).patch(17552288, 17552416).patch(17552438, 17552558).patch(17561750, 17561874).patch(17561875, 17562028).patch(17562077, 17562231).patch(17562232, 17562361).patch(17562362, 17562492).patch(17562493, 17562621).patch(17562622, 17562740).patch(17563768, 17563888).patch(17563889, 17564013).patch(17564014, 17564167).patch(17564216, 17564370).patch(17564371, 17564500).patch(17564501, 17564631).patch(17564632, 17564760).patch(17564771, 17564889).patch(17569011, 17569164).patch(17569213, 17569337).patch(17570347, 17570465).patch(17570466, 17570590).patch(17570591, 17570744).patch(17570758, 17570912).patch(17570913, 17571042).patch(17571043, 17571173).patch(17571174, 17571302).patch(17571349, 17571469).patch(17581118, 17581271).patch(17581320, 17581444).patch(17583462, 17583615).patch(17583664, 17583788).patch(17585667, 17585820).patch(17585869, 17585993).patch(17586696, 17586849).patch(17586898, 17587022).patch(17587396, 17587549).patch(17588652, 17588805).patch(17589371, 17589524).patch(17591227, 17591380).patch(17592033, 17592186).patch(17593734, 17593887).patch(17594141, 17594294).patch(17595097, 17595250).patch(17595689, 17595842).patch(17596203, 17596356).patch(17596917, 17597070).patch(17598403, 17598556).patch(17598944, 17599097).patch(17616304, 17616469).patch(17820764, 17820927).patch(17924987, 17925150).patch(17939377, 17939541).patch(18109178, 18109342).save()
p('local/share/terminfo/t/tvi920b-vb').patch(951, 1077).save()
p('local/lib/python2.7/lib-dynload/select.so').patch(3714, 3824).patch(42371, 42526).patch(42527, 42680).patch(46865, 47012).patch(49061, 49231).save()
p('local/lib/python2.7/lib-dynload/_h
	Rewriting paths for your new installation directory
	===================================================

	This might take a few minutes but only has to be done once.

	patching /usr/lib/sagemath/src/build/cythonized/sage/rings/real_arb.c
	Traceback (most recent call last):
	File "/usr/lib/sagemath/relocate-once.py", line 85, in <module>
	p('src/build/cythonized/sage/rings/real_arb.c').substitute().save()
	File "/usr/lib/sagemath/relocate-once.py", line 70, in __call__
	return FilePatch(self, filename)
	File "/usr/lib/sagemath/relocate-once.py", line 21, in __init__
	self.st = os.stat(filename)
	OSError: [Errno 2] No such file or directory: '/usr/lib/sagemath/src/build/cythonized/sage/rings/real_arb.c'
	┌────────────────────────────────────────────────────────────────────┐
	│ SageMath Version 7.0, Release Date: 2016-01-19 │
	│ Type "notebook()" for the browser-based notebook interface. │
	│ Type "help()" for help. │
	└────────────────────────────────────────────────────────────────────┘