gistfile1.txt

;
;	File 'topol.top' was generated
;	By user: pdewaal (1000)
;	On host: aspen
;	At date: Sun Sep 27 16:06:38 2015
;
;	This is a standalone topology file
;
;	It was generated using program:
;	pdb2gmx - VERSION 4.5.5
;
;	Command line was:
;	pdb2gmx -f combined.pdb -o ht1b.pdb -ter 
;
;	Force field was read from current directory or a relative path - path added.
;

; Include forcefield parameters
#include "./charmm36-jun2015.ff/forcefield.itp"

; Include chain topologies
#include "topol_Protein_chain_A.itp"
#include "topol_Protein_chain_B.itp"
#include "topol_Protein_chain_D.itp"
#include "topol_Other_chain_L.itp"
#include "topol_Other.itp"
#include "ERM.itp"

; Include water topology
#include "./charmm36-jun2015.ff/tip3p.itp"

#ifdef POSRES_WATER
; Position restraint for each water oxygen
[ position_restraints ]
;  i funct       fcx        fcy        fcz
   1    1       1000       1000       1000
#endif

; Include topology for ions
#include "./charmm36-jun2015.ff/ions.itp"

[ system ]
; Name
Protein

[ molecules ]
; Compound        #mols
Protein_chain_A     1
Protein_chain_B     1
Protein_chain_D     1
Other_chain_L       1
Other               1
SOL             19750
ERM                 1