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Created April 27, 2015 13:54
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extasy.log2
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] radical.pilot version: 0.25 (5bf8358@master)
2015:04:06 10:20:33 961 MainThread saga : [INFO ] saga-python version: 5bf8358@master
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.myproxy
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.myproxy for saga.Context API with URL scheme(s) ['myproxy://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.x509
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.x509 for saga.Context API with URL scheme(s) ['x509://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.ssh
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.ssh for saga.Context API with URL scheme(s) ['ssh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.context.userpass
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.context.userpass for saga.Context API with URL scheme(s) ['userpass://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_job
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Service API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_job for saga.job.Job API with URL scheme(s) ['fork://', 'local://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_file
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.namespace.Entry API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.Directory API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.shell.shell_file for saga.filesystem.File API with URL scheme(s) ['file://', 'local://', 'sftp://', 'gsisftp://', 'ssh://', 'gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.shell.shell_resource
2015:04:06 10:20:33 961 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.shell.shell_resource: beta versions are disabled (v0.1.beta)
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.redis.redis_advert
2015:04:06 10:20:33 961 MainThread saga.Engine : [WARNING ] Skipping adaptor saga.adaptors.redis.redis_advert 1: module loading failed: No module named redis
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.sge.sgejob
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Service API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.sge.sgejob for saga.job.Job API with URL scheme(s) ['sge://', 'sge+ssh://', 'sge+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.pbs.pbsjob
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Service API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.pbs.pbsjob for saga.job.Job API with URL scheme(s) ['pbs://', 'pbs+ssh://', 'pbs+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.lsf.lsfjob
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Service API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.lsf.lsfjob for saga.job.Job API with URL scheme(s) ['lsf://', 'lsf+ssh://', 'lsf+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.condor.condorjob
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Service API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.condor.condorjob for saga.job.Job API with URL scheme(s) ['condor://', 'condor+ssh://', 'condor+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.slurm.slurm_job
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Service API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.slurm.slurm_job for saga.job.Job API with URL scheme(s) ['slurm://', 'slurm+ssh://', 'slurm+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.http.http_file
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.namespace.Entry API with URL scheme(s) ['http://', 'https://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.http.http_file for saga.filesystem.File API with URL scheme(s) ['http://', 'https://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.aws.ec2_resource
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.Context API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Manager API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.aws.ec2_resource for saga.resource.Compute API with URL scheme(s) ['ec2://', 'ec2_keypair://', 'openstack://', 'eucalyptus://', 'euca://', 'aws://', 'amazon://', 'http://', 'https://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.loadl.loadljob
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Service API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.loadl.loadljob for saga.job.Job API with URL scheme(s) ['loadl://', 'loadl+ssh://', 'loadl+gsissh://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Loading adaptor saga.adaptors.globus_online.go_file
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Directory API with URL scheme(s) ['go://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.namespace.Entry API with URL scheme(s) ['go://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.Directory API with URL scheme(s) ['go://']
2015:04:06 10:20:33 961 MainThread saga.Engine : [INFO ] Register adaptor saga.adaptors.globus_online.go_file for saga.filesystem.File API with URL scheme(s) ['go://']
2015:04:06 10:20:33 961 MainThread saga.saga.adaptor.ssh : [INFO ] default ssh key at /Users/elenabreitmoser/.ssh/id_rsa
2015:04:06 10:20:33 961 MainThread saga.saga.adaptor.ssh : [INFO ] ignore ssh key at /Users/elenabreitmoser/.ssh/known_hosts (no public key: /Users/elenabreitmoser/.ssh/known_hosts.pub)
2015:04:06 10:20:33 961 MainThread saga.ContextSSH : [INFO ] init SSH context for key at '/Users/elenabreitmoser/.ssh/id_rsa' done
2015:04:06 10:20:33 961 MainThread saga.DefaultSession : [DEBUG ] default context [saga.adaptor.ssh ] : {'LifeTime' : '-1', 'Type' : 'ssh', 'UserCert' : '/Users/elenabreitmoser/.ssh/id_rsa.pub', 'UserKey' : '/Users/elenabreitmoser/.ssh/id_rsa'}
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] using database url mongodb://extasy:extasyproject@extasy-db.epcc.ed.ac.uk/radicalpilot
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] using database path radicalpilot
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for das4.fs2
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for epsrc.archer
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.sierra
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.alamo
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.hotel
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for futuregrid.india
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.bigred2
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for iu.quarry
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for local.localhost
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for lrz.supermuc
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for ncar.yellowstone
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for nersc.hopper
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for radical.tutorial
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for rice.biou
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for rice.davinci
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.stampede
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.trestles
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.gordon
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.blacklight
2015:04:06 10:20:33 radical.pilot.MainProcess: [INFO ] Loaded resource configurations for xsede.lonestar
2015:04:06 10:20:34 radical.pilot.MainProcess: [INFO ] New Session created{'uid': '55224fe14c917a03c130b2ef', 'created': datetime.datetime(2015, 4, 6, 9, 20, 33, 573820), 'database_auth': 'extasy:extasyproject', 'database_name': 'radicalpilot', 'database_url': 'mongodb://extasy:extasyproject@extasy-db.epcc.ed.ac.uk/radicalpilot', 'last_reconnect': None}.
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-1[4446081024]) for PilotManager 55224fe24c917a03c130b2f0 started.
2015:04:06 10:20:34 radical.pilot.MainProcess: [WARNING ] using alias 'epsrc.archer' for deprecated resource key 'archer.ac.uk'
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] saga.utils.PTYShell ('sftp://login.archer.ac.uk/')
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x1087d7090>
2015:04:06 10:20:34 radical.pilot.MainProcess: [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for PilotManager 55224fe24c917a03c130b2f0.
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] open master pty for [ssh] [ebreitmo@login.archer.ac.uk] ebreitmo: /usr/bin/env TERM=vt100 "/usr/bin/ssh" -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk'
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1087d7590>
2015:04:06 10:20:34 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 64] (Last login: Mon Apr 6 10:06:00 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:20:34 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] write: [ 6] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Mon Apr 6 10:06:00 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) (Last login: Mon Apr 6 10:06:00 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 1] ($)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 15] ($HELLO_1_SAGA\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_1_SAGA)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 6] [ 1] ($)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1087cd6d0>
2015:04:06 10:20:35 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 64] (Last login: Mon Apr 6 10:20:34 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:20:35 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Mon Apr 6 10:20:34 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) (Last login: Mon Apr 6 10:20:34 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 1] ($)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 15] ($HELLO_1_SAGA\n)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_1_SAGA)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 1] ($)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 14] (eslogin002:~> )
2015:04:06 10:20:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 7] [ ] (flush pty read cache)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 10] (PROMPT-0->)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] got new shell prompt
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 7] [ ] (flush pty read cache)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 7] [ ] (flush pty read cache)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] run_sync: echo "WORKDIR: /work/e290/e290/ebreitmo"
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] write: [ 7] [ 41] (echo "WORKDIR: /work/e290/e290/ebreitmo"\n)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] read : [ 7] [ 45] (WORKDIR: /work/e290/e290/ebreitmo\nPROMPT-0->)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Determined remote working directory for sftp://login.archer.ac.uk/: '/work/e290/e290/ebreitmo'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] PTYShell del <saga.utils.pty_shell.PTYShell object at 0x1087d7090>
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Launching ComputePilot {u'state': u'PendingLaunch', u'commands': [], u'description': {u'project': u'e290', u'resource': u'archer.ac.uk', u'queue': u'short', u'sandbox': u'/work/e290/e290/ebreitmo', u'cleanup': None, u'pilot_agent_priv': None, u'access_schema': None, u'memory': None, u'cores': 24, u'runtime': 20}, u'sagajobid': None, u'started': None, u'cores_per_node': None, u'output_transfer_started': None, u'finished': None, u'submitted': datetime.datetime(2015, 4, 6, 9, 20, 37, 318000), u'output_transfer_finished': None, u'sandbox': u'sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/', u'pilotmanager': u'55224fe24c917a03c130b2f0', u'unitmanager': None, u'heartbeat': None, u'statehistory': [{u'timestamp': datetime.datetime(2015, 4, 6, 9, 20, 37, 317000), u'state': u'PendingLaunch'}], u'input_transfer_started': None, u'_id': ObjectId('55224fe24c917a03c130b2f1'), u'input_transfer_finished': None, u'nodes': None, u'log': []}
2015:04:06 10:20:37 radical.pilot.MainProcess: [WARNING ] using alias 'epsrc.archer' for deprecated resource key 'archer.ac.uk'
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Using pilot agent /Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Using bootstrapper /Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Copying bootstrapper 'file://localhost//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh' to agent sandbox (sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//default_bootstrapper.sh).
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x108804dd0>
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] open master pty for [sh] [localhost] elenabreitmoser: /usr/bin/env TERM=vt100 "/bin/bash" -i'
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1084a7d90>
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 8] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 8] [ 54] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ $)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ $)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ $)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x108804e90>
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 1] ($)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 9] [ ] (flush pty read cache)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 1] ($)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [WARNING ] flush: [ 9] [ 1] (discard data: '$')
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] PTYProcess del <saga.utils.pty_process.PTYProcess object at 0x1087cd6d0>
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Starting InputFileTransferWorker
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Worker thread (ID: Thread-3[4467113984]) for UnitManager 55224fe54c917a03c130b2f2 started.
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Loaded scheduler: DirectSubmissionScheduler.
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 55224fe54c917a03c130b2f2.
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/mdshort.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///mdshort.in', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///min.in', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///penta.top', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Preprocessor/Amber/../../Analyzer/CoCo/postexec.py', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///postexec.py', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_0.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_1.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_2.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_3.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_4.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_5.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_6.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 55224fe54c917a03c130b2f2.
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter0/md_0_7.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_0.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_1.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_2.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_3.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_4.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_5.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_6.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'file:///Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter1/md_1_7.ncdf', 'priority': 0}'
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 55224fe54c917a03c130b2f2.
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] Connected to MongoDB. Serving requests for UnitManager 55224fe54c917a03c130b2f2.
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 10] (PROMPT-0->)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 9] [ ] (flush pty read cache)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 10] (PROMPT-0->)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 9] [ ] (flush pty read cache)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 9] [ ] (flush pty read cache)
2015:04:06 10:20:37 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a448050>
2015:04:06 10:20:37 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10880ee90>
2015:04:06 10:20:37 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 64] (Last login: Mon Apr 6 10:20:35 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:20:37 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 132] (true; test -r '//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh'\n)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 10] (PROMPT-0->)
2015:04:06 10:20:37 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:20:38 radical.pilot.MainProcess: [INFO ] ComputePilot '55224fe24c917a03c130b2f1' state changed from 'PendingLaunch' to 'Launching'.
2015:04:06 10:20:38 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:38 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Last login: Mon Apr 6 10:20:35 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) (Last login: Mon Apr 6 10:20:35 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 1] ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 1] ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 14] (HELLO_1_SAGA\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) (HELLO_1_SAGA)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 1] ($)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 14] (eslogin002:~> )
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a448510>
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10850cbd0>
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 1] ($)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 1] ($)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [WARNING ] flush: [ 15] [ 1] (discard data: '$')
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] got new shell prompt
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a448890>
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10850cc10>
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 1] ($)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 1] ($)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [WARNING ] flush: [ 16] [ 1] (discard data: '$')
2015:04:06 10:20:39 961 PilotLauncherWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 88] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/\n)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache)
2015:04:06 10:20:39 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a448b10>
2015:04:06 10:20:39 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/sftp -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:39 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] write: [ 16] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] read : [ 16] [ 10] (PROMPT-0->)
2015:04:06 10:20:39 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 16] [ ] (flush pty read cache)
2015:04:06 10:20:40 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a448a50>
2015:04:06 10:20:40 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 34] (Connected to login.archer.ac.uk.\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (Connected to login.archer.ac.uk.
sftp> )
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (Connected to login.archer.ac.uk.
sftp> )
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x108521490>
2015:04:06 10:20:41 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 228] (mput "//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/default_bootstrapper.sh"\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 232] (Uploading //Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/bootstrapper/default_bootstrapper.sh to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/default_bootstrapper.sh\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (//Users/elenabreitmoser/ExTASY-tools/lib/pyth 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (//Users/elenabreitmoser/ExTASY-tools/lib/pyth 100% 14KB 14.3KB/s 00:00 \n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '//Users/elenabreitmoser/ExTASY-tools/lib/pyth', 'sftp>']
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 730] (------------------------------ ... --------------------------\n\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 64] (Last login: Mon Apr 6 10:20:37 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:20:41 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:20:42 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:42 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 28] ( printf 'HELLO_%d_SAGA\n' 2\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Last login: Mon Apr 6 10:20:37 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Last login: Mon Apr 6 10:20:37 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 1] ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 1] ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 14] (HELLO_1_SAGA\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) (HELLO_1_SAGA)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 1] ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_2_SAGA: (5) (
$)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 15] ($HELLO_2_SAGA\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_2_SAGA)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 1] ($)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:20:43 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 14] (eslogin002:~> )
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 10] (PROMPT-0->)
2015:04:06 10:20:43 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] Copying agent 'file://localhost//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py' to agent sandbox (sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/).
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] init_instance file://localhost//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] flush: [ 9] [ ] (flush pty read cache)
2015:04:06 10:20:43 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] write: [ 18] [ 304] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'\n)
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] run_sync: true; test -r '//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] write: [ 9] [ 134] (true; test -r '//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py'\n)
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [DEBUG ] read : [ 9] [ 10] (PROMPT-0->)
2015:04:06 10:20:43 961 PilotLauncherWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 18] [ 10] (PROMPT-0->)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 18] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a4516d0>
2015:04:06 10:20:43 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/sftp -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 730] (------------------------------ ... --------------------------\n\n)
2015:04:06 10:20:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 229] (mput "//Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/radical-pilot-agent.py"\n)
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 233] (Uploading //Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/agent/radical-pilot-agent-multicore.py to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/radical-pilot-agent.py\n)
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (//Users/elenabreitmoser/ExTASY-tools/lib/pyth 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (//Users/elenabreitmoser/ExTASY-tools/lib/pyth 100% 104KB 103.8KB/s 00:00 \n)
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '//Users/elenabreitmoser/ExTASY-tools/lib/pyth', 'sftp>']
2015:04:06 10:20:44 radical.pilot.MainProcess: [DEBUG ] saga.job.Service ('pbs+ssh://login.archer.ac.uk/')
2015:04:06 10:20:44 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a448f10>
2015:04:06 10:20:44 961 PilotLauncherWorker-1 saga.PTYShell : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 34] (Connected to login.archer.ac.uk.\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 6] (sftp> )
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Connected to login.archer.ac.uk.
sftp> )
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Connected to login.archer.ac.uk.
sftp> )
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a442e10>
2015:04:06 10:20:45 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 730] (------------------------------ ... --------------------------\n\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 19] [ ] (flush pty read cache)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] write: [ 19] [ 161] (mput "/Users/elenabreitmoser/coam-on-archer/mdshort.in" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/mdshort.in"\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 165] (Uploading /Users/elenabreitmoser/coam-on-archer/mdshort.in to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/mdshort.in\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 79] (/Users/elenabreitmoser/coam-on-archer/mdshort 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 81] (/Users/elenabreitmoser/coam-on-archer/mdshort 100% 216 0.2KB/s 00:00 \n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 19] [ 6] (sftp> )
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/mdshort', 'sftp>']
2015:04:06 10:20:45 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 64] (Last login: Mon Apr 6 10:20:41 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:20:45 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:45 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:45 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:45 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a451890>
2015:04:06 10:20:45 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:46 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:20:46 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Last login: Mon Apr 6 10:20:41 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Last login: Mon Apr 6 10:20:41 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1] ($)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 15] ($HELLO_1_SAGA\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_1_SAGA)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1] ($)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x108579d90>
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 14] (eslogin002:~> )
2015:04:06 10:20:47 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 1] ($)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 1] ($)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [WARNING ] flush: [ 21] [ 1] (discard data: '$')
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] got new shell prompt
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] write: [ 21] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] read : [ 21] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 21] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qdel
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 11] (which qdel\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 45] (/opt/pbs/12.2.401.141761/bin/qdel\nPROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qsub
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 11] (which qsub\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 35] (/opt/pbs/12.2.401.141761/bin/qsub\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 304] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: qsub --version
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 15] (qsub --version\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] (pbs_version = PBSPro_12.2.401.141761\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which pbsnodes
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 15] (which pbsnodes\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 49] (/opt/pbs/12.2.401.141761/bin/pbsnodes\nPROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:47 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: pbsnodes --version
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 19] (pbsnodes --version\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 48] (pbs_version = PBSPro_12.2.401.141761\nPROMPT-0->)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 153] (mput "/Users/elenabreitmoser/coam-on-archer/min.in" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/min.in"\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 157] (Uploading /Users/elenabreitmoser/coam-on-archer/min.in to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/min.in\n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/min.in 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/min.in 100% 227 0.2KB/s 00:00 \n)
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/min.in', 'sftp>']
2015:04:06 10:20:47 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:47 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qstat
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 12] (which qstat\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 36] (/opt/pbs/12.2.401.141761/bin/qstat\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a459250>
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x108579dd0>
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 22] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 22] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 22] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 22] [ 1] ($)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 22] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 22] [ 1] ($)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [WARNING ] flush: [ 22] [ 1] (discard data: '$')
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: qstat --version
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 16] (qstat --version\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] (pbs_version = PBSPro_12.2.401.141761\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Found PBS tools: {'qdel': {'path': '/opt/pbs/12.2.401.141761/bin/qdel', 'version': '?'}, 'qsub': {'path': '/opt/pbs/12.2.401.141761/bin/qsub', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}, 'pbsnodes': {'path': '/opt/pbs/12.2.401.141761/bin/pbsnodes', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}, 'qstat': {'path': '/opt/pbs/12.2.401.141761/bin/qstat', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}}
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 22] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 22] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 22] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which aprun
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 12] (which aprun\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 57] (/opt/cray/eslogin/eswrap/1.1.0-1.010400.915.0/bin/aprun\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Host 'login.archer.ac.uk' seems to be a Cray machine.
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 22] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 22] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 22] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/pbsnodes -a | grep -E "resources_available.ncpus"
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 99] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/pbsnodes -a | grep -E "resources_available.ncpus"\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 304] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 159] (mput "/Users/elenabreitmoser/coam-on-archer/penta.top" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/penta.top"\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 163] (Uploading /Users/elenabreitmoser/coam-on-archer/penta.top to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/penta.top\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/penta.t 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/penta.t 100% 33KB 32.8KB/s 00:00 \n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/penta.t', 'sftp>']
2015:04:06 10:20:48 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:48 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a451ad0>
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a451a90>
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:48 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 1] ($)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 1] ($)
2015:04:06 10:20:48 961 MainThread saga.ShellFile : [WARNING ] flush: [ 23] [ 1] (discard data: '$')
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] write: [ 23] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 23] [ 10] (PROMPT-0->)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 23] [ ] (flush pty read cache)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 304] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/'\n)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 233] (mput "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/postexec.py"\n)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 237] (Uploading /Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/Analyzer/CoCo/postexec.py to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/postexec.py\n)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/ExTASY-tools/lib/pytho 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/ExTASY-tools/lib/pytho 100% 521 0.5KB/s 00:00 \n)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/ExTASY-tools/lib/pytho', 'sftp>']
2015:04:06 10:20:49 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:49 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a4595d0>
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10859b0d0>
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 1] ($)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 1] ($)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [WARNING ] flush: [ 24] [ 1] (discard data: '$')
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 10] (PROMPT-0->)
2015:04:06 10:20:49 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:49 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] write: [ 24] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 24] [ 10] (PROMPT-0->)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 24] [ ] (flush pty read cache)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_0.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_0.ncdf"\n)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_0.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_0.ncdf\n)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:50 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a45d210>
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10859b110>
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 1] ($)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 1] ($)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [WARNING ] flush: [ 25] [ 1] (discard data: '$')
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 10] (PROMPT-0->)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache)
2015:04:06 10:20:50 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] write: [ 25] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] read : [ 25] [ 10] (PROMPT-0->)
2015:04:06 10:20:50 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 25] [ ] (flush pty read cache)
2015:04:06 10:20:50 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_1.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_1.ncdf"\n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_1.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_1.ncdf\n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:51 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a45da90>
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1085a3e50>
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] write: [ 26] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] read : [ 26] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] write: [ 26] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] read : [ 26] [ 1] ($)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 26] [ ] (flush pty read cache)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] read : [ 26] [ 1] ($)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [WARNING ] flush: [ 26] [ 1] (discard data: '$')
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] write: [ 26] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] read : [ 26] [ 10] (PROMPT-0->)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 26] [ ] (flush pty read cache)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] write: [ 26] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] read : [ 26] [ 10] (PROMPT-0->)
2015:04:06 10:20:51 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 26] [ ] (flush pty read cache)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:51 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:51 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_2.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_2.ncdf"\n)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_2.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_2.ncdf\n)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:52 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a45d110>
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1085a8a90>
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] write: [ 27] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] read : [ 27] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] write: [ 27] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] read : [ 27] [ 1] ($)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 27] [ ] (flush pty read cache)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] read : [ 27] [ 1] ($)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [WARNING ] flush: [ 27] [ 1] (discard data: '$')
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] write: [ 27] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] read : [ 27] [ 10] (PROMPT-0->)
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 27] [ ] (flush pty read cache)
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] write: [ 27] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] read : [ 27] [ 10] (PROMPT-0->)
2015:04:06 10:20:52 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 27] [ ] (flush pty read cache)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:52 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:52 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_3.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_3.ncdf"\n)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_3.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_3.ncdf\n)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:53 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a459590>
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1085b6490>
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] write: [ 28] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] read : [ 28] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] write: [ 28] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] read : [ 28] [ 1] ($)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 28] [ ] (flush pty read cache)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] read : [ 28] [ 1] ($)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [WARNING ] flush: [ 28] [ 1] (discard data: '$')
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] write: [ 28] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] read : [ 28] [ 10] (PROMPT-0->)
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 28] [ ] (flush pty read cache)
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] write: [ 28] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] read : [ 28] [ 10] (PROMPT-0->)
2015:04:06 10:20:53 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 28] [ ] (flush pty read cache)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:53 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:53 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_4.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_4.ncdf"\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_4.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_4.ncdf\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:54 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a451b10>
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10852be50>
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] write: [ 29] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] read : [ 29] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] write: [ 29] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] read : [ 29] [ 1] ($)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 29] [ ] (flush pty read cache)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] read : [ 29] [ 1] ($)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [WARNING ] flush: [ 29] [ 1] (discard data: '$')
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] write: [ 29] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] read : [ 29] [ 10] (PROMPT-0->)
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 29] [ ] (flush pty read cache)
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] write: [ 29] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] read : [ 29] [ 10] (PROMPT-0->)
2015:04:06 10:20:54 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 29] [ ] (flush pty read cache)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:54 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_5.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_5.ncdf"\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_5.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_5.ncdf\n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:54 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:54 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a461550>
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10852bdd0>
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 30] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 30] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 30] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 30] [ 1] ($)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 30] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 30] [ 1] ($)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [WARNING ] flush: [ 30] [ 1] (discard data: '$')
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 30] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 30] [ 10] (PROMPT-0->)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 30] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 30] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 30] [ 10] (PROMPT-0->)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 30] [ ] (flush pty read cache)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_6.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_6.ncdf"\n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_6.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_6.ncdf\n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:55 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:55 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a461cd0>
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x108521510>
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 31] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 31] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:55 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] write: [ 31] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 31] [ 1] ($)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 31] [ ] (flush pty read cache)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [DEBUG ] read : [ 31] [ 1] ($)
2015:04:06 10:20:55 961 MainThread saga.ShellFile : [WARNING ] flush: [ 31] [ 1] (discard data: '$')
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 31] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 31] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 31] [ ] (flush pty read cache)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 31] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 31] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 31] [ ] (flush pty read cache)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/'\n)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_7.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_7.ncdf"\n)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_0_7.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter0/md_0_7.ncdf\n)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:56 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:56 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a4485d0>
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a448110>
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 32] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 32] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 32] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 32] [ 1] ($)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 32] [ ] (flush pty read cache)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 32] [ 1] ($)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [WARNING ] flush: [ 32] [ 1] (discard data: '$')
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 32] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 32] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 32] [ ] (flush pty read cache)
2015:04:06 10:20:56 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] write: [ 32] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] read : [ 32] [ 10] (PROMPT-0->)
2015:04:06 10:20:56 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 32] [ ] (flush pty read cache)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_0.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_0.ncdf"\n)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_0.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_0.ncdf\n)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:57 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a459f10>
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a459c10>
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] write: [ 33] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] read : [ 33] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] write: [ 33] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] read : [ 33] [ 1] ($)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 33] [ ] (flush pty read cache)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] read : [ 33] [ 1] ($)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [WARNING ] flush: [ 33] [ 1] (discard data: '$')
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] write: [ 33] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] read : [ 33] [ 10] (PROMPT-0->)
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 33] [ ] (flush pty read cache)
2015:04:06 10:20:57 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] write: [ 33] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] read : [ 33] [ 10] (PROMPT-0->)
2015:04:06 10:20:57 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 33] [ ] (flush pty read cache)
2015:04:06 10:20:57 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_1.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_1.ncdf"\n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_1.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_1.ncdf\n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:58 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10859b090>
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1085a3e90>
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] write: [ 34] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] read : [ 34] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] write: [ 34] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] read : [ 34] [ 1] ($)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 34] [ ] (flush pty read cache)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] read : [ 34] [ 1] ($)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [WARNING ] flush: [ 34] [ 1] (discard data: '$')
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] write: [ 34] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] read : [ 34] [ 10] (PROMPT-0->)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 34] [ ] (flush pty read cache)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] write: [ 34] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] read : [ 34] [ 10] (PROMPT-0->)
2015:04:06 10:20:58 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 34] [ ] (flush pty read cache)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:58 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:58 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_2.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_2.ncdf"\n)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_2.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_2.ncdf\n)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:20:59 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a466950>
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a461190>
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] write: [ 35] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] read : [ 35] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] write: [ 35] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] read : [ 35] [ 1] ($)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 35] [ ] (flush pty read cache)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] read : [ 35] [ 1] ($)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [WARNING ] flush: [ 35] [ 1] (discard data: '$')
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] write: [ 35] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] read : [ 35] [ 10] (PROMPT-0->)
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 35] [ ] (flush pty read cache)
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] write: [ 35] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] read : [ 35] [ 10] (PROMPT-0->)
2015:04:06 10:20:59 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 35] [ ] (flush pty read cache)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:59 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:20:59 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_3.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_3.ncdf"\n)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_3.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_3.ncdf\n)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:21:00 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a459a50>
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a459390>
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] write: [ 36] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] read : [ 36] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] write: [ 36] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] read : [ 36] [ 1] ($)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 36] [ ] (flush pty read cache)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] read : [ 36] [ 1] ($)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [WARNING ] flush: [ 36] [ 1] (discard data: '$')
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] write: [ 36] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] read : [ 36] [ 10] (PROMPT-0->)
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 36] [ ] (flush pty read cache)
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] write: [ 36] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] read : [ 36] [ 10] (PROMPT-0->)
2015:04:06 10:21:00 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 36] [ ] (flush pty read cache)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:00 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:00 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_4.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_4.ncdf"\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_4.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_4.ncdf\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:21:01 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a461410>
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a451d90>
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] write: [ 37] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] read : [ 37] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] write: [ 37] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] read : [ 37] [ 1] ($)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 37] [ ] (flush pty read cache)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] read : [ 37] [ 1] ($)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [WARNING ] flush: [ 37] [ 1] (discard data: '$')
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] write: [ 37] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] read : [ 37] [ 10] (PROMPT-0->)
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 37] [ ] (flush pty read cache)
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] write: [ 37] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] read : [ 37] [ 10] (PROMPT-0->)
2015:04:06 10:21:01 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 37] [ ] (flush pty read cache)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:01 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_5.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_5.ncdf"\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_5.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_5.ncdf\n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:21:01 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:21:01 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a4664d0>
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a451b90>
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 38] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 38] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 38] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 38] [ 1] ($)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 38] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 38] [ 1] ($)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [WARNING ] flush: [ 38] [ 1] (discard data: '$')
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 38] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 38] [ 10] (PROMPT-0->)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 38] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 38] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 38] [ 10] (PROMPT-0->)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 38] [ ] (flush pty read cache)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_6.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_6.ncdf"\n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_6.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_6.ncdf\n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:21:02 radical.pilot.MainProcess: [INFO ] Operating from staging
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 402] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area' ; cd '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area'\n)
2015:04:06 10:21:02 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] initialized directory (0)()
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a4672d0>
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x10a451910>
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [INFO ] running: /usr/bin/env TERM=vt100 /bin/bash -i
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 39] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 39] [ 53] ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] Got initial shell prompt (5) ((ExTASY-tools)mbp-eb:coam-on-archer elenabreitmoser$ )
2015:04:06 10:21:02 961 MainThread saga.ShellDirectory : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 39] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 39] [ 1] ($)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 39] [ ] (flush pty read cache)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] read : [ 39] [ 1] ($)
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [WARNING ] flush: [ 39] [ 1] (discard data: '$')
2015:04:06 10:21:02 961 MainThread saga.ShellFile : [DEBUG ] write: [ 39] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:21:03 961 MainThread saga.ShellFile : [DEBUG ] read : [ 39] [ 10] (PROMPT-0->)
2015:04:06 10:21:03 961 MainThread saga.ShellDirectory : [DEBUG ] got new shell prompt
2015:04:06 10:21:03 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 39] [ ] (flush pty read cache)
2015:04:06 10:21:03 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: cd /Users/elenabreitmoser/coam-on-archer
2015:04:06 10:21:03 961 MainThread saga.ShellFile : [DEBUG ] write: [ 39] [ 41] (cd /Users/elenabreitmoser/coam-on-archer\n)
2015:04:06 10:21:03 961 MainThread saga.ShellFile : [DEBUG ] read : [ 39] [ 10] (PROMPT-0->)
2015:04:06 10:21:03 961 MainThread saga.ShellFile : [DEBUG ] flush: [ 39] [ ] (flush pty read cache)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:03 961 MainThread saga.ShellDirectory : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 310] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area && mkdir -p '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/'\n)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 182] (mput "/Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_7.ncdf" "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_7.ncdf"\n)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 186] (Uploading /Users/elenabreitmoser/coam-on-archer/backup/iter1/md_1_7.ncdf to /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/staging_area/iter1/md_1_7.ncdf\n)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/Users/elenabreitmoser/coam-on-archer/backup/ 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/Users/elenabreitmoser/coam-on-archer/backup/ 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] copy done: ['Uploading', '/Users/elenabreitmoser/coam-on-archer/backup/', 'sftp>']
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///postexec.py', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'postexec.py', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_0.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_1.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_2.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_3.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_4.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_5.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_6.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter0/md_0_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_0_7.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_0.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_1.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_2.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_3.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_4.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_5.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_6.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Copy', 'source': 'staging:///iter1/md_1_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'md_1_7.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min20.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min20.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min21.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min21.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min22.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min22.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min23.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min23.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min24.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min24.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min25.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min25.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min26.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min26.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'min27.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/min27.crd', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'coco.log', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/2_coco.log', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_0.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_1.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_2.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_3.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_4.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_5.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_6.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_0_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_0_7.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_0.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_0.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_1.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_1.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_2.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_2.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_3.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_3.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_4.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_4.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_5.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_5.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_6.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_6.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Transfer', 'source': 'md_1_7.ncdf', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'backup/iter2/md_1_7.ncdf', 'priority': 0}'
2015:04:06 10:21:03 radical.pilot.MainProcess: [INFO ] Scheduled ComputeUnits [] for execution on ComputePilot '55224fe24c917a03c130b2f1'.
2015:04:06 10:21:03 radical.pilot.MainProcess: [INFO ] 0 units remain unscheduled
2015:04:06 10:21:03 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 715] (ncpus = 24\n resources_ava ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 924] ( resources_available.ncpus ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 441] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 296] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 468] (s_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 308] (ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 678] (ncpus = 24\n resources_ava ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 341] (s = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 381] (cpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 455] (cpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 850] ( resources_available.ncpus ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 553] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 491] (pus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 343] (pus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 712] (us = 24\n resources_availa ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 860] (us = 24\n resources_availa ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 375] ( 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( 24\n resources_available. ... pus = 24\n resources_avail)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (able.ncpus = 24\n resource ... available.ncpus = 24\n res)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ources_available.ncpus = 24\n ... resources_available.ncpus = )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 485] (24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 625] ( resources_available.ncpus = 2 ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( 24\n resources_available. ... pus = 24\n resources_avail)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (able.ncpus = 24\n resource ... available.ncpus = 24\n res)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 917] (ources_available.ncpus = 24\n ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 838] (s_available.ncpus = 24\n r ... sources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 37] ( resources_available.ncpus = 24\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:21:20 961 PilotLauncherWorker-1 saga.PBSJobService : [DEBUG ] Found the following 'ppn' configurations: {64: 1, 16: 4, 80: 2, 24: 4914}. Using 24 as default ppn.
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] Bootstrap command line: /bin/bash ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 55224fe14c917a03c130b2ef -p 55224fe24c917a03c130b2f1 -t 20 -c 24 -v 0.25 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -e 'module load python' -g /work/e290/shared/shared_pilot_ve_20140703 -l PBSPRO -j APRUN -k APRUN -f 10.60.0.52 -d 10 -b"]
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] Submitting SAGA job with description: {'Queue': 'short', 'Executable': '/bin/bash', 'WorkingDirectory': '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/', 'Project': 'e290', 'WallTimeLimit': 20, 'Arguments': ['-l', 'default_bootstrapper.sh', "-n radicalpilot -s 55224fe14c917a03c130b2ef -p 55224fe24c917a03c130b2f1 -t 20 -c 24 -v 0.25 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -e 'module load python' -g /work/e290/shared/shared_pilot_ve_20140703 -l PBSPRO -j APRUN -k APRUN -f 10.60.0.52 -d 10 -b"], 'Error': 'AGENT.STDERR', 'Output': 'AGENT.STDOUT', 'TotalCPUCount': 24}
2015:04:06 10:21:20 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Using Cray XT (e.g. Archer) specific '#PBS -l select=xx' flags (PBSPro_12).
2015:04:06 10:21:20 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Generated PBS script:
#!/bin/bash
#PBS -V
#PBS -o /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/AGENT.STDOUT
#PBS -e /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/AGENT.STDERR
#PBS -l walltime=0:20:00
#PBS -q short
#PBS -P e290
#PBS -A e290
#PBS -l select=1
export PBS_O_WORKDIR=/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
export SAGA_PPN=24
/bin/bash -l default_bootstrapper.sh -n radicalpilot -s 55224fe14c917a03c130b2ef -p 55224fe24c917a03c130b2f1 -t 20 -c 24 -v 0.25 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -e 'module load python' -g /work/e290/shared/shared_pilot_ve_20140703 -l PBSPRO -j APRUN -k APRUN -f 10.60.0.52 -d 10 -b
2015:04:06 10:21:20 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Creating working directory /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:21:20 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 87] (mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1\n)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:21:20 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:21:21 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: SCRIPTFILE=`mktemp -t SAGA-Python-PBSJobScript.XXXXXX` && echo "
#!/bin/bash
#PBS -V
#PBS -o /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/AGENT.STDOUT
#PBS -e /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/AGENT.STDERR
#PBS -l walltime=0:20:00
#PBS -q short
#PBS -P e290
#PBS -A e290
#PBS -l select=1
export PBS_O_WORKDIR=/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
mkdir -p /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
cd /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1
export SAGA_PPN=24
/bin/bash -l default_bootstrapper.sh -n radicalpilot -s 55224fe14c917a03c130b2ef -p 55224fe24c917a03c130b2f1 -t 20 -c 24 -v 0.25 -m extasy-db.epcc.ed.ac.uk:27017 -a extasy:extasyproject -e 'module load python' -g /work/e290/shared/shared_pilot_ve_20140703 -l PBSPRO -j APRUN -k APRUN -f 10.60.0.52 -d 10 -b " > $SCRIPTFILE && /opt/pbs/12.2.401.141761/bin/qsub $SCRIPTFILE && rm -f $SCRIPTFILE
2015:04:06 10:21:21 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 1073] (SCRIPTFILE=`mktemp -t SAGA-Pyt ... IPTFILE && rm -f $SCRIPTFILE\n)
2015:04:06 10:21:21 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 13] (2794209.sdb\n)
2015:04:06 10:21:21 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:21:21 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Submitted PBS job with id: [pbs+ssh://login.archer.ac.uk/]-[2794209]
2015:04:06 10:21:21 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] assign job id None / [pbs+ssh://login.archer.ac.uk/]-[2794209] / None to watch list (['[pbs+ssh://login.archer.ac.uk/]-[2794209]'])
2015:04:06 10:21:21 radical.pilot.MainProcess: [DEBUG ] SAGA job submitted with job id [pbs+ssh://login.archer.ac.uk/]-[2794209]
2015:04:06 10:21:21 radical.pilot.MainProcess: [INFO ] ComputePilot '55224fe24c917a03c130b2f1' state changed from 'Launching' to 'PendingActive'.
2015:04:06 10:21:34 radical.pilot.MainProcess: [INFO ] Performing periodical health check for 55224fe24c917a03c130b2f1 (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2794209])
2015:04:06 10:21:34 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] PTYShell init <saga.utils.pty_shell.PTYShell object at 0x10a4515d0>
2015:04:06 10:21:34 961 PilotLauncherWorker-1 saga.PTYShell : [INFO ] PTY prompt pattern: [\$#%>\]]\s*$
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] PTYProcess init <saga.utils.pty_process.PTYProcess object at 0x1084e9390>
2015:04:06 10:21:34 radical.pilot.MainProcess: [INFO ] running: /usr/bin/env TERM=vt100 /usr/bin/ssh -t -o IdentityFile=/Users/elenabreitmoser/.ssh/id_rsa -o ControlMaster=no -o ControlPath=/tmp/saga_ssh_elenabreitmoser_%h_%p.ebreitmo.ctrl -o TCPKeepAlive=no -o ServerAliveInterval=10 -o ServerAliveCountMax=20 ebreitmo@login.archer.ac.uk
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 33] ( export PS1='$' ; set prompt='$'\n)
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 82] (mux_client_request_session: session request failed: Session open refused by peer\n)
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 730] (------------------------------ ... --------------------------\n\n)
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 64] (Last login: Mon Apr 6 10:20:45 2015 from mbp-eb.epcc.ed.ac.uk\n)
2015:04:06 10:21:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 514] (================================================================================\nlogin.archer.ac.uk\n--------------------------------------------------------------------------------\n\nFor assistance please contact the service helpdesk at: support@archer.ac.uk\n\n--------------------------------------------------------------------------------\n\nIF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.\n\n================================================================================\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 51] ( export PS1='$' > /dev/null 2>&1 || set prompt='$'\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 28] ( printf 'HELLO_%d_SAGA\n' 1\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 23] (ebreitmo@eslogin002:~> )
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
This is a private computing facility. Access to this system is limited to those
who have been granted access by the operating service provider on behalf of the
issuing authority and use is restricted to the purposes for which access was
granted. All access and usage are governed by the terms and conditions of access
agreed to by all registered users and are thus subject to the provisions of the
Computer Misuse Act, 1990 under which unauthorised use is a criminal offence.
If you are not authorised to use this service you must disconnect immediately.
--------------------------------------------------------------------------------
Last login: Mon Apr 6 10:20:45 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
--------------------------------------------------------------------------------
IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) (mux_client_request_session: session request failed: Session open refused by peer
--------------------------------------------------------------------------------
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If you are not authorised to use this service you must disconnect immediately.
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Last login: Mon Apr 6 10:20:45 2015 from mbp-eb.epcc.ed.ac.uk
================================================================================
login.archer.ac.uk
--------------------------------------------------------------------------------
For assistance please contact the service helpdesk at: support@archer.ac.uk
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IF YOU ARE NOT AUTHORISED TO USE THIS ACCOUNT THEN YOU MUST LOGOUT IMMEDIATELY.
================================================================================
ebreitmo@eslogin002:~> )
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1] ($)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) ($)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] waiting for prompt trigger HELLO_1_SAGA: (5) ($)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 15] ($HELLO_1_SAGA\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] got shell prompt trigger (4) ($HELLO_1_SAGA)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1] ($)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] got initial shell prompt (5) (
$)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] Got initial shell prompt (5) (
$)
2015:04:06 10:21:35 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] running command shell: exec /bin/sh -i
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 47] ( stty -echo ; unset HISTFILE ; exec /bin/sh -i\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 14] (eslogin002:~> )
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 100] ( unset PROMPT_COMMAND ; unset HISTFILE ; PS1='PROMPT-$?->'; PS2=''; export PS1 PS2 2>&1 >/dev/null\n)
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:21:35 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] got new shell prompt
2015:04:06 10:21:35 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qdel
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 11] (which qdel\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 35] (/opt/pbs/12.2.401.141761/bin/qdel\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qsub
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 11] (which qsub\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 45] (/opt/pbs/12.2.401.141761/bin/qsub\nPROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: qsub --version
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 15] (qsub --version\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 38] (pbs_version = PBSPro_12.2.401.141761\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which pbsnodes
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 15] (which pbsnodes\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 49] (/opt/pbs/12.2.401.141761/bin/pbsnodes\nPROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: pbsnodes --version
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 19] (pbsnodes --version\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 48] (pbs_version = PBSPro_12.2.401.141761\nPROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which qstat
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 12] (which qstat\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 36] (/opt/pbs/12.2.401.141761/bin/qstat\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: qstat --version
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 16] (qstat --version\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 48] (pbs_version = PBSPro_12.2.401.141761\nPROMPT-0->)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Found PBS tools: {'qdel': {'path': '/opt/pbs/12.2.401.141761/bin/qdel', 'version': '?'}, 'qsub': {'path': '/opt/pbs/12.2.401.141761/bin/qsub', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}, 'pbsnodes': {'path': '/opt/pbs/12.2.401.141761/bin/pbsnodes', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}, 'qstat': {'path': '/opt/pbs/12.2.401.141761/bin/qstat', 'version': 'pbs_version = PBSPro_12.2.401.141761\n'}}
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: which aprun
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 12] (which aprun\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 57] (/opt/cray/eslogin/eswrap/1.1.0-1.010400.915.0/bin/aprun\n)
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PBSJobService : [INFO ] Host 'login.archer.ac.uk' seems to be a Cray machine.
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:21:36 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/pbsnodes -a | grep -E "resources_available.ncpus"
2015:04:06 10:21:36 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 99] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/pbsnodes -a | grep -E "resources_available.ncpus"\n)
2015:04:06 10:21:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:21:44 961 Thread-8 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:21:44 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:21:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 105] ( job_state = Q\n ctime = Mon Apr 6 10:21:21 2015\n mtime = Mon Apr 6 10:21:21 2015\nPROMPT-0->)
2015:04:06 10:21:44 961 Thread-8 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Pending)
2015:04:06 10:22:14 radical.pilot.MainProcess: [INFO ] ComputePilot '55224fe24c917a03c130b2f1' state changed from 'PendingActive' to 'Active'.
2015:04:06 10:22:14 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:22:14 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:22:15 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:22:15 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 320] (s_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 481] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 740] ( resources_available.ncpus ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1022] (_available.ncpus = 24\n re ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 306] (pus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 628] ( resources_available.ncpus ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 875] (s_available.ncpus = 24\n r ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 973] (cpus = 24\n resources_avai ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 949] (s_available.ncpus = 24\n r ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 381] (cpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 886] ( resources_available.ncpus = ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 292] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( 24\n resources_available. ... pus = 24\n resources_avail)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (able.ncpus = 24\n resource ... available.ncpus = 24\n res)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ources_available.ncpus = 24\n ... resources_available.ncpus = )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 115] (24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 788] (cpus = 24\n resources_avai ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 881] (sources_available.ncpus = 24\n ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 330] ( resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( 24\n resources_available. ... pus = 24\n resources_avail)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (able.ncpus = 24\n resource ... available.ncpus = 24\n res)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ources_available.ncpus = 24\n ... resources_available.ncpus = )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (24\n resources_available.n ... us = 24\n resources_availa)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ble.ncpus = 24\n resources ... vailable.ncpus = 24\n reso)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (urces_available.ncpus = 24\n ... resources_available.ncpus = 2)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (4\n resources_available.nc ... s = 24\n resources_availab)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (le.ncpus = 24\n resources_ ... ailable.ncpus = 24\n resou)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (rces_available.ncpus = 24\n ... resources_available.ncpus = 24)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (\n resources_available.ncp ... = 24\n resources_availabl)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (e.ncpus = 24\n resources_a ... ilable.ncpus = 24\n resour)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1023] (ces_available.ncpus = 24\n ... resources_available.ncpus = 24)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1025] (\n resources_available.ncp ... = 24\n resources_available)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (.ncpus = 24\n resources_av ... lable.ncpus = 24\n resourc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (es_available.ncpus = 24\n ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 789] (ncpus = 24\n resources_ava ... sources_available.ncpus = 24\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ncpus = 24\n resources_ava ... able.ncpus = 24\n resource)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s_available.ncpus = 24\n r ... ources_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus ... 24\n resources_available.n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (cpus = 24\n resources_avai ... ble.ncpus = 24\n resources)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (_available.ncpus = 24\n re ... urces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... 4\n resources_available.nc)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (pus = 24\n resources_avail ... le.ncpus = 24\n resources_)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (available.ncpus = 24\n res ... rces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = ... \n resources_available.ncp)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (us = 24\n resources_availa ... e.ncpus = 24\n resources_a)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (vailable.ncpus = 24\n reso ... ces_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( resources_available.ncpus = 2 ... n resources_available.ncpu)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (s = 24\n resources_availab ... .ncpus = 24\n resources_av)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ailable.ncpus = 24\n resou ... es_available.ncpus = 24\n )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (resources_available.ncpus = 24 ... resources_available.ncpus)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( = 24\n resources_availabl ... ncpus = 24\n resources_ava)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (ilable.ncpus = 24\n resour ... s_available.ncpus = 24\n r)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (esources_available.ncpus = 24\ ... resources_available.ncpus )
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (= 24\n resources_available ... cpus = 24\n resources_avai)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (lable.ncpus = 24\n resourc ... _available.ncpus = 24\n re)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] (sources_available.ncpus = 24\n ... resources_available.ncpus =)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 1024] ( 24\n resources_available. ... pus = 24\n resources_avail)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 323] (able.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\n resources_available.ncpus = 24\nPROMPT-0->)
2015:04:06 10:22:18 961 PilotLauncherWorker-1 saga.PBSJobService : [DEBUG ] Found the following 'ppn' configurations: {64: 1, 16: 4, 80: 2, 24: 4914}. Using 24 as default ppn.
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:22:18 961 PilotLauncherWorker-1 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:22:18 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 171] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\nPROMPT-0->)
2015:04:06 10:22:18 radical.pilot.MainProcess: [INFO ] pilot 55224fe24c917a03c130b2f1 seems alive and well
2015:04:06 10:22:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:22:34 radical.pilot.MainProcess: [INFO ] Performing periodical health check for 55224fe24c917a03c130b2f1 (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2794209])
2015:04:06 10:22:34 radical.pilot.MainProcess: [INFO ] pilot 55224fe24c917a03c130b2f1 seems alive and well
2015:04:06 10:22:34 961 Thread-9 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:22:34 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:22:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 171] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\nPROMPT-0->)
2015:04:06 10:22:34 961 Thread-9 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:22:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:22:44 961 Thread-8 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:22:44 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:22:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 123] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:22:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] ( stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:22:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:22:44 961 Thread-8 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:23:34 radical.pilot.MainProcess: [INFO ] Performing periodical health check for 55224fe24c917a03c130b2f1 (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2794209])
2015:04:06 10:23:34 radical.pilot.MainProcess: [INFO ] pilot 55224fe24c917a03c130b2f1 seems alive and well
2015:04:06 10:23:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:23:34 961 Thread-9 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:23:34 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:23:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 171] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\nPROMPT-0->)
2015:04:06 10:23:34 961 Thread-9 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:23:37 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'Executing' to 'StagingOutput'.
2015:04:06 10:23:37 radical.pilot.MainProcess: [INFO ] OFTW cu found, progressing ...
2015:04:06 10:23:37 radical.pilot.MainProcess: [INFO ] Processing output file transfers for ComputeUnit 55224fff4c917a03c130b2f3
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/coco.log -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/2_coco.log
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/coco.log')
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/coco.log
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log'
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 133] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log'\n)
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/2_coco.log')
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:37 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 121] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log\n)
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 124] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log\nsftp> )
2015:04:06 10:23:37 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 189] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/2_coco.log"\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 192] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log to /Users/elenabreitmoser/coam-on-archer/backup/iter2/2_coco.log\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 1058 1.0KB/s 00:00 \n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/coco.log']
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_0.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_0.ncdf
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_0.ncdf')
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_0.ncdf
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf'
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf'\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_0.ncdf')
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf\nsftp> )
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_0.ncdf"\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_0.ncdf\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_0.ncdf']
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_1.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_1.ncdf
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_1.ncdf')
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_1.ncdf
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf'
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf'\n)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_1.ncdf')
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:38 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:38 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf\nsftp> )
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_1.ncdf"\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_1.ncdf\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_1.ncdf']
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_2.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_2.ncdf
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_2.ncdf')
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_2.ncdf
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf'
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf'\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_2.ncdf')
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf\nsftp> )
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_2.ncdf"\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_2.ncdf\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_2.ncdf']
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_3.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_3.ncdf
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_3.ncdf')
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_3.ncdf
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf'
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf'\n)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_3.ncdf')
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:39 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:39 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf\nsftp> )
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_3.ncdf"\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_3.ncdf\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_3.ncdf']
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_4.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_4.ncdf
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_4.ncdf')
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_4.ncdf
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf'
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf'\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_4.ncdf')
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf\nsftp> )
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_4.ncdf"\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_4.ncdf\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_4.ncdf']
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_5.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_5.ncdf
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_5.ncdf')
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_5.ncdf
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf'
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf'\n)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_5.ncdf')
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:40 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:40 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf\nsftp> )
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_5.ncdf"\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_5.ncdf\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_5.ncdf']
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_6.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_6.ncdf
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_6.ncdf')
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_6.ncdf
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf'
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf'\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_6.ncdf')
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf\nsftp> )
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_6.ncdf"\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_6.ncdf\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_6.ncdf']
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_7.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_7.ncdf
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_7.ncdf')
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_0_7.ncdf
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf'
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf'\n)
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:41 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_7.ncdf')
2015:04:06 10:23:41 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf\nsftp> )
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_7.ncdf"\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_0_7.ncdf\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_0_7.ncdf']
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_0.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_0.ncdf
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_0.ncdf')
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_0.ncdf
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf'
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf'\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_0.ncdf')
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf\nsftp> )
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_0.ncdf"\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_0.ncdf\n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_0.ncdf']
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_1.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_1.ncdf
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_1.ncdf')
2015:04:06 10:23:42 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_1.ncdf
2015:04:06 10:23:42 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf'
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf'\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_1.ncdf')
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf\nsftp> )
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_1.ncdf"\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_1.ncdf\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_1.ncdf']
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_2.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_2.ncdf
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_2.ncdf')
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_2.ncdf
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf'
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf'\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_2.ncdf')
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:43 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf\n)
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf\nsftp> )
2015:04:06 10:23:43 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_2.ncdf"\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_2.ncdf\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_2.ncdf']
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_3.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_3.ncdf
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_3.ncdf')
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_3.ncdf
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf'
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf'\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_3.ncdf')
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:44 961 Thread-8 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf\nsftp> )
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 85] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] ( mtime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] ( stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:23:44 961 Thread-8 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_3.ncdf"\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_3.ncdf\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_3.ncdf']
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_4.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_4.ncdf
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_4.ncdf')
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_4.ncdf
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf'
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf'\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_4.ncdf')
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:44 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf\n)
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf\nsftp> )
2015:04:06 10:23:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_4.ncdf"\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_4.ncdf\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_4.ncdf']
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_5.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_5.ncdf
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_5.ncdf')
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_5.ncdf
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf'
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf'\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_5.ncdf')
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf\nsftp> )
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_5.ncdf"\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_5.ncdf\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_5.ncdf']
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_6.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_6.ncdf
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_6.ncdf')
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_6.ncdf
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf'
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf'\n)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_6.ncdf')
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:45 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:45 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf\nsftp> )
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_6.ncdf"\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_6.ncdf\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_6.ncdf']
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Transferring output file sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_7.ncdf -> file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_7.ncdf
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] saga.fs.File ('sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_7.ncdf')
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] init_instance sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1//unit-55224fff4c917a03c130b2f3/md_1_7.ncdf
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellDirectory : [DEBUG ] run_sync: true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] write: [ 12] [ 136] (true; test -r '/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf'\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 12] [ 10] (PROMPT-0->)
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [INFO ] file initialized (0)()
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] saga.fs.File.copy ('file://localhost/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_7.ncdf')
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] flush: [ 15] [ ] (flush pty read cache)
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] run_sync: mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] write: [ 15] [ 63] (mkdir -p '/Users/elenabreitmoser/coam-on-archer/backup/iter2/'\n)
2015:04:06 10:23:46 961 OutputFileTransferWorker-1 saga.ShellFile : [DEBUG ] read : [ 15] [ 10] (PROMPT-0->)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 12] [ ] (flush pty read cache)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 124] ( ls /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 127] (/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf\nsftp> )
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] flush: [ 17] [ ] (flush pty read cache)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] write: [ 17] [ 193] (mget "/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf" "/Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_7.ncdf"\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 196] (Fetching /work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf to /Users/elenabreitmoser/coam-on-archer/backup/iter2/md_1_7.ncdf\n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 79] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 0% 0 0.0KB/s --:-- ETA)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 81] (/work/e290/e290/ebreitmo/radical.pilot.sandbo 100% 70KB 70.0KB/s 00:00 \n)
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] read : [ 17] [ 6] (sftp> )
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] copy done: ['/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/unit-55224fff4c917a03c130b2f3/md_1_7.ncdf']
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '55224fff4c917a03c130b2f3' state changed from 'StagingOutput' to 'Done'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min20.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md20.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min21.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md21.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min22.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md22.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min23.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md23.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min24.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md24.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min25.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md25.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min26.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md26.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter2/min27.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min2.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///penta.top', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.top', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///min.in', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'min.in', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'staging:///iter0/penta.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'penta.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [DEBUG ] Completing entry '{'action': 'Link', 'source': 'md2.crd', 'flags': ['CreateParents', 'SkipFailed'], 'target': 'staging:///iter2/md27.crd', 'priority': 0}'
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f8' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f7' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f4' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f6' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f9' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fb' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f5' state changed from 'New' to 'PendingInputStaging'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] Scheduled ComputeUnits [] for execution on ComputePilot '55224fe24c917a03c130b2f1'.
2015:04:06 10:23:46 radical.pilot.MainProcess: [INFO ] 0 units remain unscheduled
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f8' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f7' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f6' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f4' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f9' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fb' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f5' state changed from 'PendingInputStaging' to 'StagingInput'.
2015:04:06 10:23:47 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f8' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f7' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f6' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f4' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f9' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fb' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f5' state changed from 'StagingInput' to 'PendingExecution'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f8' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f7' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f6' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f4' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f9' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fb' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:48 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f5' state changed from 'PendingExecution' to 'Scheduling'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f8' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f7' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f6' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f4' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f9' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fb' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:49 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2f5' state changed from 'Scheduling' to 'Executing'.
2015:04:06 10:23:50 radical.pilot.MainProcess: [INFO ] RUN ComputeUnit '552250a24c917a03c130b2fa' state changed from 'Executing' to 'Failed'.
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] Couldn't call callback function string indices must be integers
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops itransfer InputFileTransferWorker-1
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-1 stopping
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-1 stopped
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped itransfer InputFileTransferWorker-1
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops itransfer InputFileTransferWorker-2
2015:04:06 10:23:50 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-2 stopping
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] itransfer InputFileTransferWorker-2 stopped
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped itransfer InputFileTransferWorker-2
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops otransfer OutputFileTransferWorker-1
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-1 stopping
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-1 stopped
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped otransfer OutputFileTransferWorker-1
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stops otransfer OutputFileTransferWorker-2
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-2 stopping
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] otransfer OutputFileTransferWorker-2 stopped
2015:04:06 10:23:51 radical.pilot.MainProcess: [ERROR ] uworker Thread-3 stopped otransfer OutputFileTransferWorker-2
Exception in thread Thread-3:
Traceback (most recent call last):
File "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/threading.py", line 808, in __bootstrap_inner
self.run()
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/controller/unit_manager_controller.py", line 302, in run
self.call_unit_state_callbacks(unit_id, new_state)
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/controller/unit_manager_controller.py", line 202, in call_unit_state_callbacks
cb(self._shared_data[unit_id]['facade_object'], new_state)
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/runme.py", line 54, in unit_state_change_cb
for log in unit.log:
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/compute_unit.py", line 330, in log
logs.append(Logentry(logentry=log["logentry"], timestamp=log["timestamp"]))
TypeError: string indices must be integers
2015:04:06 10:24:34 radical.pilot.MainProcess: [INFO ] Performing periodical health check for 55224fe24c917a03c130b2f1 (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2794209])
2015:04:06 10:24:34 radical.pilot.MainProcess: [INFO ] pilot 55224fe24c917a03c130b2f1 seems alive and well
2015:04:06 10:24:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:24:34 961 Thread-9 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:24:34 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:24:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 161] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:24:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:24:34 961 Thread-9 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:24:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:24:44 961 Thread-8 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:24:44 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:24:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 123] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:24:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 38] ( stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:24:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:24:44 961 Thread-8 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:25:34 radical.pilot.MainProcess: [INFO ] Performing periodical health check for 55224fe24c917a03c130b2f1 (SAGA job id [pbs+ssh://login.archer.ac.uk/]-[2794209])
2015:04:06 10:25:34 radical.pilot.MainProcess: [INFO ] pilot 55224fe24c917a03c130b2f1 seems alive and well
2015:04:06 10:25:34 radical.pilot.MainProcess: [DEBUG ] flush: [ 40] [ ] (flush pty read cache)
2015:04:06 10:25:34 961 Thread-9 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:25:34 radical.pilot.MainProcess: [DEBUG ] write: [ 40] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:25:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 161] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:25:34 radical.pilot.MainProcess: [DEBUG ] read : [ 40] [ 10] (PROMPT-0->)
2015:04:06 10:25:34 961 Thread-9 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:25:44 radical.pilot.MainProcess: [DEBUG ] flush: [ 20] [ ] (flush pty read cache)
2015:04:06 10:25:44 961 Thread-8 saga.PTYShell : [DEBUG ] run_sync: unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'
2015:04:06 10:25:44 radical.pilot.MainProcess: [DEBUG ] write: [ 20] [ 157] (unset GREP_OPTIONS; /opt/pbs/12.2.401.141761/bin/qstat -fx 2794209 | grep -E -i '(job_state)|(exec_host)|(exit_status)|(ctime)|(start_time)|(stime)|(mtime)'\n)
2015:04:06 10:25:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 161] ( job_state = R\n ctime = Mon Apr 6 10:21:21 2015\n exec_host = mom5/253*0\n mtime = Mon Apr 6 10:22:08 2015\n stime = Mon Apr 6 10:22:08 2015\n)
2015:04:06 10:25:44 radical.pilot.MainProcess: [DEBUG ] read : [ 20] [ 10] (PROMPT-0->)
2015:04:06 10:25:44 961 Thread-8 saga.PBSJobService : [INFO ] Job monitoring thread updating Job [pbs+ssh://login.archer.ac.uk/]-[2794209] (state: Running)
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] session 55224fe14c917a03c130b2ef closing
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] session 55224fe14c917a03c130b2ef closes pmgr 55224fe24c917a03c130b2f0
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pmgr 55224fe24c917a03c130b2f0 closing
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pmgr 55224fe24c917a03c130b2f0 cancel worker Thread-1
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stops launcher PilotLauncherWorker-1
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopping
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] launcher PilotLauncherWorker-1 stopped
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pworker Thread-1 stopped launcher PilotLauncherWorker-1
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pmgr 55224fe24c917a03c130b2f0 canceled worker Thread-1
2015:04:06 10:26:23 radical.pilot.MainProcess: [DEBUG ] Reconnected to existing ComputePilot {'uid': '55224fe24c917a03c130b2f1', 'stdout': None, 'start_time': datetime.datetime(2015, 4, 6, 9, 22, 14, 269000), 'resource_detail': {'cores_per_node': 24, 'nodes': [u'archer_1930']}, 'submission_time': datetime.datetime(2015, 4, 6, 9, 20, 37, 318000), 'logfile': None, 'resource': u'archer.ac.uk', 'log': [<radical.pilot.logentry.Logentry object at 0x10aee9d90>, <radical.pilot.logentry.Logentry object at 0x10aee9a50>, <radical.pilot.logentry.Logentry object at 0x10a461e90>, <radical.pilot.logentry.Logentry object at 0x10aaa5290>, <radical.pilot.logentry.Logentry object at 0x10aaa5690>, <radical.pilot.logentry.Logentry object at 0x10aaa5650>], 'sandbox': u'sftp://login.archer.ac.uk/work/e290/e290/ebreitmo/radical.pilot.sandbox/pilot-55224fe24c917a03c130b2f1/', 'state': u'Active', 'stop_time': None, 'stderr': None}
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] pmgr 55224fe24c917a03c130b2f0 cancels pilot 55224fe24c917a03c130b2f1
2015:04:06 10:26:23 radical.pilot.MainProcess: [INFO ] Sent 'COMMAND_CANCEL_PILOT' command to pilots ['55224fe24c917a03c130b2f1'].
2015:04:06 10:26:23 radical.pilot.MainProcess: [WARNING ] actively cancel pilot 55224fe24c917a03c130b2f1? state: Active
2015:04:06 10:26:23 radical.pilot.MainProcess: [ERROR ] delay to actively cancel pilot 55224fe24c917a03c130b2f1: state Active
Traceback (most recent call last):
File "/Users/elenabreitmoser/ExTASY-tools/bin/extasy", line 8, in <module>
load_entry_point('radical.ensemblemd.extasy==0.1.4b0', 'console_scripts', 'extasy')()
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/ensemblemd/extasy/bin/runme.py", line 218, in main
session.close(cleanup=False)
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/session.py", line 279, in close
pmgr.close (terminate=terminate)
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/pilot_manager.py", line 168, in close
self.cancel_pilots ()
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/pilot_manager.py", line 543, in cancel_pilots
self._worker.register_cancel_pilots_request(pilot_ids=pilot_ids)
File "/Users/elenabreitmoser/ExTASY-tools/lib/python2.7/site-packages/radical/pilot/controller/pilot_manager_controller.py", line 541, in register_cancel_pilots_request
time.sleep (10)
KeyboardInterrupt
2015:04:06 10:26:24 radical.pilot.MainProcess: [INFO ] ComputePilot '55224fe24c917a03c130b2f1' state changed from 'Active' to 'Canceled'.
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