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#!/bin/bash
read -rd "\000" helpmessage <<EOF
$(basename $0): Run common workflow tool description language conformance tests.
Syntax:
$(basename $0) [RUNNER=/path/to/cwl-runner] [DRAFT=cwl-draft-version]
Options:
-nT Run a specific test.
-l List tests
EOF
DRAFT=v1.0
TEST_N=""
JUNIT_XML=""
RUNNER=cwl-runner
PLATFORM=$(uname -s)
COVERAGE="python"
EXTRA=""
while [[ -n "$1" ]]
do
arg="$1"; shift
case "$arg" in
--help)
echo >&2 "$helpmessage"
echo >&2
exit 1
;;
-n*)
TEST_N=$arg
;;
-j*)
TEST_J=$arg
;;
-l)
TEST_L=-l
;;
--only-tools)
ONLY_TOOLS=--only-tools
;;
--junit-xml=*)
JUNIT_XML=$arg
;;
*=*)
eval $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
;;
esac
done
if ! runner="$(which $RUNNER)" ; then
echo >&2 "$helpmessage"
echo >&2
echo >&2 "runner '$RUNNER' not found"
exit 1
fi
runs=0
failures=0
checkexit() {
if [[ "$?" != "0" ]]; then
failures=$((failures+1))
fi
}
runtest() {
echo "--- Running conformance test $DRAFT on $1 ---"
"$1" --version
runs=$((runs+1))
(cd $DRAFT
cwltest --tool "$1" \
--test=conformance_test_${DRAFT}.yaml ${TEST_N} \
${TEST_L} ${TEST_J} ${ONLY_TOOLS} ${JUNIT_XML} --basedir ${DRAFT} -- ${EXTRA}
)
checkexit
}
if [[ $PLATFORM == "Linux" ]]; then
runtest "$(readlink -f $runner)"
else
runtest "$(greadlink -f $runner)"
fi
if [[ -n "$TEST_L" ]] ; then
exit 0
fi
# Final reporting
echo
if [[ $failures != 0 ]]; then
echo "$failures tool tests failed"
else
if [[ $runs == 0 ]]; then
echo >&2 "$helpmessage"
echo >&2
exit 1
else
echo "All tool tests succeeded"
fi
fi
exit $failures
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