Skip to content

Instantly share code, notes, and snippets.

@anton-khodak anton-khodak/miso.log

Last active Oct 4, 2019
Embed
What would you like to do?
miso log
2019-10-04 14:15:13 INFO: Checking MISO storage paths...
2019-10-04 14:15:13 INFO: Directory (/storage/miso) exists.
2019-10-04 14:15:13 INFO: Directory (/storage/miso/log) exists.
2019-10-04 14:15:13 INFO: Directory (/storage/miso/temp) exists.
2019-10-04 14:15:13 INFO: Directory (/storage/miso/files) exists.
2019-10-04 14:15:13 INFO: Directory (/storage/miso/files/submission) exists.
2019-10-04 14:15:13 INFO: All storage directories OK
2019-10-04 14:15:13 INFO: Replacing default namingScheme with OicrNamingScheme
2019-10-04 14:15:13 INFO: FrameworkServlet 'miso': initialization started
2019-10-04 14:15:13 INFO: Refreshing WebApplicationContext for namespace 'miso-servlet': startup date
2019-10-04 14:15:13 INFO: Loading XML bean definitions from ServletContext resource [/WEB-INF/miso-ser
2019-10-04 14:15:13 INFO: FrameworkServlet 'miso': initialization completed in 51 ms
2019-10-04 14:15:57 INFO: Found role ROLE_ADMIN for admin
2019-10-04 14:15:57 INFO: Found role ROLE_INTERNAL for admin
2019-10-04 14:15:57 WARN: Resolved exception caused by handler execution: org.springframework.web.Http
2019-10-04 14:16:05 WARN: SQL Error: 1054, SQLState: 42S22
2019-10-04 14:16:05 ERROR: Unknown column 'this_.readLength2' in 'field list'
2019-10-04 14:16:05 ERROR: Returning error page for exception
org.springframework.dao.InvalidDataAccessResourceUsageException: could not extract ResultSet; SQL [n/a
at org.springframework.orm.hibernate4.SessionFactoryUtils.convertHibernateAccessException(Sess
at org.springframework.orm.hibernate4.HibernateExceptionTranslator.convertHibernateAccessExcep
at org.springframework.orm.hibernate4.HibernateExceptionTranslator.translateExceptionIfPossibl
at org.springframework.dao.support.ChainedPersistenceExceptionTranslator.translateExceptionIfP
at org.springframework.dao.support.DataAccessUtils.translateIfNecessary(DataAccessUtils.java:2
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(Persisten
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at uk.ac.bbsrc.tgac.miso.webapp.context.PrometheusInterceptor.invoke(PrometheusInterceptor.jav
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransactio
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterc
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAo
at uk.ac.bbsrc.tgac.miso.persistence.impl.HibernateSequencingParametersDao$$EnhancerBySpringCG
at uk.ac.bbsrc.tgac.miso.service.impl.DefaultSequencingParametersService.list(DefaultSequencin
at uk.ac.bbsrc.tgac.miso.service.impl.DefaultSequencingParametersService$$FastClassBySpringCGL
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204)
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at org.springframework.transaction.interceptor.TransactionInterceptor$1.proceedWithInvocation(
at org.springframework.transaction.interceptor.TransactionAspectSupport.invokeWithinTransactio
at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterc
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at org.springframework.aop.framework.CglibAopProxy$DynamicAdvisedInterceptor.intercept(CglibAo
at uk.ac.bbsrc.tgac.miso.service.impl.DefaultSequencingParametersService$$EnhancerBySpringCGLI
at uk.ac.bbsrc.tgac.miso.webapp.controller.MenuController.rebuildConstants(MenuController.java
at uk.ac.bbsrc.tgac.miso.webapp.controller.MenuController.constantsScript(MenuController.java:
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
at java.lang.reflect.Method.invoke(Method.java:498)
at org.springframework.web.method.support.InvocableHandlerMethod.doInvoke(InvocableHandlerMeth
at org.springframework.web.method.support.InvocableHandlerMethod.invokeForRequest(InvocableHan
at org.springframework.web.servlet.mvc.method.annotation.ServletInvocableHandlerMethod.invokeA
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.invokeHa
at org.springframework.web.servlet.mvc.method.annotation.RequestMappingHandlerAdapter.handleIn
at org.springframework.web.servlet.mvc.method.AbstractHandlerMethodAdapter.handle(AbstractHand
at org.springframework.web.servlet.DispatcherServlet.doDispatch(DispatcherServlet.java:967)
at org.springframework.web.servlet.DispatcherServlet.doService(DispatcherServlet.java:901)
at org.springframework.web.servlet.FrameworkServlet.processRequest(FrameworkServlet.java:970)
at org.springframework.web.servlet.FrameworkServlet.doGet(FrameworkServlet.java:861)
at javax.servlet.http.HttpServlet.service(HttpServlet.java:635)
...
at org.hibernate.loader.Loader.listIgnoreQueryCache(Loader.java:2366)
at org.hibernate.loader.Loader.list(Loader.java:2361)
at org.hibernate.loader.criteria.CriteriaLoader.list(CriteriaLoader.java:124)
at org.hibernate.internal.SessionImpl.list(SessionImpl.java:1623)
at org.hibernate.internal.CriteriaImpl.list(CriteriaImpl.java:374)
at uk.ac.bbsrc.tgac.miso.persistence.impl.HibernateSequencingParametersDao.list(HibernateSeque
at uk.ac.bbsrc.tgac.miso.persistence.impl.HibernateSequencingParametersDao$$FastClassBySpringC
at org.springframework.cglib.proxy.MethodProxy.invoke(MethodProxy.java:204)
at org.springframework.aop.framework.CglibAopProxy$CglibMethodInvocation.invokeJoinpoint(Cglib
at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvoca
at org.springframework.dao.support.PersistenceExceptionTranslationInterceptor.invoke(Persisten
... 105 more
Caused by: java.sql.SQLSyntaxErrorException: Unknown column 'this_.readLength2' in 'field list'
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:120)
at com.mysql.cj.jdbc.exceptions.SQLError.createSQLException(SQLError.java:97)
at com.mysql.cj.jdbc.exceptions.SQLExceptionsMapping.translateException(SQLExceptionsMapping.j
at com.mysql.cj.jdbc.ClientPreparedStatement.executeInternal(ClientPreparedStatement.java:970)
at com.mysql.cj.jdbc.ClientPreparedStatement.executeQuery(ClientPreparedStatement.java:1020)
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedSta
at org.apache.tomcat.dbcp.dbcp2.DelegatingPreparedStatement.executeQuery(DelegatingPreparedSta
at org.hibernate.engine.jdbc.internal.ResultSetReturnImpl.extract(ResultSetReturnImpl.java:79)
... 123 more
2019-10-04 14:16:10 INFO: Found role ROLE_ADMIN for admin
2019-10-04 14:16:10 INFO: Found role ROLE_INTERNAL for admin
2019-10-04 14:16:10 WARN: Resolved exception caused by handler execution: org.springframework.web.HttpRequestMethodNotSupportedException: Request method 'POST' not supported
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
You can’t perform that action at this time.