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antonkulaga/gist:8586aa6b7f2ef47be670

Created April 2, 2015 17:44
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FASTQ cleanup
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gistfile1.txt
java -jar ./trimmomatic-0.33.jar SE -threads 2 -phred33 /home/antonkulaga/data/raw/flies/fastq/3_TTAGGC_L003_R1_001.fastq /home/antonkulaga/data/raw/flies/cleanup/3_trm.fastq ILLUMINACLIP:/opt/trimmomatic/adapters/TruSeq2-SE.fa:2:30:10 SLIDINGWINDOW:4:25
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