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@antonmks
Last active April 13, 2017 06:41
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Query 2 { DISTINCT, AVG, MAX(char3 ) }
#include <algorithm>
#include <ctime>
#include <fstream>
#include <iomanip>
#include <iostream>
#include <iterator>
#include <map>
#include <numeric>
#include <sstream>
#include <stdint.h>
#include <thrust/device_vector.h>
#include <thrust/extrema.h>
#include <thrust/reduce.h>
#include <thrust/sequence.h>
#include <thrust/sort.h>
#include <thrust/unique.h>
#include <time.h>
using namespace std;
uint64_t filesize(const char *filename) {
ifstream in(filename, ios::binary | ios::ate);
if (!in) {
cout << "Could not open file " << filename << endl;
exit(0);
};
return in.tellg();
}
struct increase_pointers {
char **char_pos;
char *first_pos;
increase_pointers(char **_char_pos, char *_first_pos)
: char_pos(_char_pos), first_pos(_first_pos) {}
template <typename IndexType>
__host__ __device__ void operator()(const IndexType &i) {
char_pos[i] = first_pos + 9 * i;
// if (i < 10)
// printf("INS %d %lld %lld \n", i, char_pos[i], first_pos);
}
};
// applying WHERE conditions
struct check_records {
const unsigned int *time6;
const char *bool5;
bool *res;
const unsigned int *time6_from;
const unsigned int *time6_to;
const char *bool5_val;
check_records(const unsigned int *_time6, const char *_bool5, bool *_res,
const unsigned int *_time6_from, const unsigned int *_time6_to,
const char *_bool5_val)
: time6(_time6), bool5(_bool5), res(_res), time6_from(_time6_from),
time6_to(_time6_to), bool5_val(_bool5_val) {}
template <typename IndexType>
__host__ __device__ void operator()(const IndexType &i) {
if (time6[i] >= time6_from[0] && time6[i] <= time6_to[0] &&
bool5[i] == bool5_val[0]) {
res[i] = 1;
} else
res[i] = 0;
}
};
// sort fixed-length strings
struct sort_str {
__host__ __device__ bool operator()(const char *t1, const char *t2) {
for (unsigned int i = 0; i < 8; i++) {
if (t1[i] < t2[i])
return 1;
if (t1[i] > t2[i])
return 0;
};
return 0;
}
};
int main(int ac, char **av) {
unsigned int time6_from = 19000101, time6_to = 20300101;
char bool5_val = 0;
string usage = "Usage : query1 [-time6_from TIME6_FROM] [-time6_to TIME6_TO "
"] [-bool5 BOOL5]";
if (ac == 1) {
cout << usage << endl;
exit(1);
};
for (unsigned int i = 1; i < ac; i++) {
if (strcmp(av[i], "-time6_from") == 0) {
if (i + 1 < ac) {
time6_from = atoi(av[i + 1]);
i++;
} else {
cout << usage << endl;
exit(1);
};
}
if (strcmp(av[i], "-time6_to") == 0) {
if (i + 1 < ac) {
time6_to = atoi(av[i + 1]);
i++;
} else {
cout << usage << endl;
exit(1);
};
} else if (strcmp(av[i], "-bool5") == 0) {
if (i + 1 < ac) {
bool5_val = av[i + 1][0];
i++;
} else {
cout << usage << endl;
exit(1);
};
}
};
string file_name = "col2.txt";
std::fstream f(file_name, std::ios_base::in | ios::binary);
uint64_t key;
thrust::device_vector<uint64_t> id2;
std::vector<uint64_t> keys;
thrust::device_vector<bool> res;
cout << "Parsing columns " << endl;
if (f) {
while (f >> key) {
keys.push_back(key);
};
id2.resize(keys.size());
thrust::copy(keys.begin(), keys.end(), id2.begin());
cout << "read " << file_name << endl;
} else {
cout << "Could not open file " << file_name << endl;
};
file_name = "col6.txt";
std::fstream f1(file_name, std::ios_base::in | ios::binary);
string date_string;
thrust::device_vector<unsigned int> time6;
std::vector<unsigned int> date_keys;
if (f1) {
while (f1 >> date_string) {
date_keys.push_back(std::stoi(date_string.substr(0, 4) +
date_string.substr(5, 2) +
date_string.substr(8, 2)));
};
time6.resize(date_keys.size());
thrust::copy(date_keys.begin(), date_keys.end(), time6.begin());
cout << "read " << file_name << endl;
} else {
cout << "Could not open file " << file_name << endl;
};
file_name = "col5.txt";
std::fstream f2(file_name, std::ios_base::in | ios::binary);
char bool_char;
thrust::device_vector<char> bool5;
std::vector<char> bool_keys;
if (f2) {
while (f2 >> bool_char) {
bool_keys.push_back(bool_char);
};
cout << "read " << file_name << endl;
bool5.resize(bool_keys.size());
thrust::copy(bool_keys.begin(), bool_keys.end(), bool5.begin());
} else {
cout << "Could not open file " << file_name << endl;
};
file_name = "col3.txt";
std::fstream f3(file_name, std::ios_base::in | ios::binary);
auto file_size = filesize(file_name.c_str());
thrust::host_vector<char> file_buffer(file_size);
thrust::device_vector<char> char3;
if (f3) {
f3.read(file_buffer.data(), file_size);
char3.resize(file_size);
thrust::copy(file_buffer.begin(), file_buffer.end(), char3.begin());
cout << "read " << file_name << endl;
} else {
cout << "Could not open file " << file_name << endl;
};
// Now we have all 4 arrays in a device memory
std::clock_t start1 = std::clock();
res.resize(bool_keys.size());
// SQL WHERE condition check
thrust::device_vector<unsigned int> dev_time6_from(1);
thrust::device_vector<unsigned int> dev_time6_to(1);
thrust::device_vector<char> dev_bool5(1);
dev_time6_from[0] = time6_from;
dev_time6_to[0] = time6_to;
dev_bool5[0] = bool5_val;
thrust::counting_iterator<unsigned int> begin(0);
check_records ff(
(const unsigned int *)thrust::raw_pointer_cast(time6.data()),
(const char *)thrust::raw_pointer_cast(bool5.data()),
thrust::raw_pointer_cast(res.data()),
(const unsigned int *)thrust::raw_pointer_cast(dev_time6_from.data()),
(const unsigned int *)thrust::raw_pointer_cast(dev_time6_to.data()),
(const char *)thrust::raw_pointer_cast(dev_bool5.data()));
thrust::for_each(begin, begin + res.size(), ff);
time6.resize(0);
time6.shrink_to_fit();
bool5.resize(0);
bool5.shrink_to_fit();
// copy_if the results
thrust::device_vector<uint64_t> id2_cpy(res.size());
auto w_count = thrust::copy_if(id2.begin(), id2.end(), res.begin(),
id2_cpy.begin(), thrust::identity<bool>()) -
id2_cpy.begin();
// SQL DISTINCT
thrust::sort(id2_cpy.begin(), id2_cpy.begin() + w_count);
auto distinct_cnt =
thrust::unique(id2_cpy.begin(), id2_cpy.begin() + w_count) -
id2_cpy.begin();
cout << "distinct count " << distinct_cnt << endl;
// SQL AVG
auto sum = thrust::reduce(id2_cpy.begin(), id2_cpy.end());
cout << "AVG(id2) = " << sum / w_count
<< endl; // incorrect results because sum of ~100 million 20-digit
// integers is greater than a max of uint64_t
// please notice that the same overflow occurs with CH
// so it would be better to sum something smaller
// Not enough memory at this point
id2.resize(0);
id2.shrink_to_fit();
id2_cpy.resize(0);
id2_cpy.shrink_to_fit();
// MAX(char3)
thrust::host_vector<char> max_char(8);
thrust::device_vector<char *> char_pos(date_keys.size());
increase_pointers func(thrust::raw_pointer_cast(char_pos.data()),
thrust::raw_pointer_cast(char3.data()));
thrust::for_each(begin, begin + char_pos.size(), func);
thrust::device_vector<char *> char_pos_res(w_count);
// apply WHERE conditions
thrust::copy_if(char_pos.begin(), char_pos.end(), res.begin(),
char_pos_res.begin(), thrust::identity<bool>());
// thrust::sort(char_pos_res.begin(), char_pos_res.end(), sort_str());
// //sorting all strings is too slow , so we use max_element
auto end =
thrust::max_element(char_pos_res.begin(), char_pos_res.end(), sort_str());
char *device_str = *(end);
cudaMemcpy(max_char.data(), (void *)device_str, 8, cudaMemcpyDeviceToHost);
cout << "MAX(char3) = ";
for (int z = 0; z < 8; z++)
cout << max_char[z];
cout << endl;
std::cout << "time " << ((std::clock() - start1) / (double)CLOCKS_PER_SEC)
<< '\n';
return 0;
}
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