Created
June 3, 2010 16:42
-
-
Save antunderwood/424122 to your computer and use it in GitHub Desktop.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| number_of_strains = 500 | |
| k = 900 # number of variant sites in the alignment, i.e all non-consrved columns | |
| harmonic_number = (1...number_of_strains).inject{|sum, n| sum + 1.0/n} # note ... so that this will calculate harmonic of n-1 | |
| theta = k/harmonic_number |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment