aokinobu

As of now, there is one disk with 2 partitions, main concern is one about 136GB size.

RAID:
aoki@18go:~$ sudo fdisk /dev/sdf

Welcome to fdisk (util-linux 2.27.1).
Changes will remain in memory only, until you decide to write them.
Be careful before using the write command.

aokinobu

 PREFIX glycan: <http://purl.jp/bio/12/glyco/glycan#>
PREFIX glytoucan:  <http://www.glytoucan.org/glyco/owl/glytoucan#> SELECT DISTINCT ?SaccharideURI
?PrimaryId
 ?Sequence 
 FROM <http://rdf.glytoucan.org/core>
FROM <http://rdf.glytoucan.org/sequence/wurcs> WHERE {
?SaccharideURI a glycan:saccharide .
?SaccharideURI glytoucan:has_primary_id ?PrimaryId .
 ?SaccharideURI glycan:has_glycosequence ?GlycanSequenceURI .
 ?GlycanSequenceURI glycan:has_sequence "WURCS=2.0/1,1,0/[Ad1zz12h_3-7_1*N(CC^ZCCCC^ZCCCC$7/6CC$3)_6*NCN(C^ECC^ECC^ZC$5)/7OC/3=O]/1/"^^<http://www.w3.org/2001/XMLSchema#string> .

aokinobu

DEFINE sql:select-option "order" PREFIX glycan: <http://purl.jp/bio/12/glyco/glycan#>
PREFIX wurcs: <http://www.glycoinfo.org/glyco/owl/wurcs#> SELECT DISTINCT ?glycan FROM <http://rdf.glytoucan.org/wurcs/ms>
FROM <http://rdf.glytoucan.org/sequence/wurcs>
FROM <http://rdf.glytoucan.org>
 WHERE {
  ?glycan glycan:has_glycosequence ?gseq .
  ?gseq glycan:has_sequence ?wurcs .
  FILTER( ?wurcs != "WURCS=2.0/5,9,8/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][axxxxh-1b_1-?_2*NCC/3=O]/1-2-3-4-2-4-2-5-5/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_h1-a?|b?|c?|d?|e?|f?|g?}_i1-a?|b?|c?|d?|e?|f?|g?}"^^xsd:string )
  FILTER( regex(?wurcs, "WURCS=2.0/5,9,8/") )

aokinobu

java.lang.NullPointerException: null
	at org.eurocarbdb.MolecularFramework.io.WURCS.SugarExporterWURCS$1.compare(SugarExporterWURCS.java:353)

RES
1b:x-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5