aolinto

import copernicusmarine as cm

cm.subset(
  dataset_id="cmems_mod_glo_phy_my_0.083deg_P1M-m",
  #dataset_id="cmems_mod_glo_phy_myint_0.083deg_P1M-m",  
  dataset_version="202311",
  variables=["bottomT", "mlotst", "so", "thetao"],
  minimum_longitude=-49.0,
  maximum_longitude=-38.5,
  minimum_latitude=-28.5,

aolinto

# =======================================================================================================================
# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# version 2024/06/04
# https://gist.github.com/aolinto/3828be642d06857788500d51f114eb49
# script to process Multi Observation Global Ocean 3D Temperature Salinity Height Geostrophic Current and MLD
# product MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012
# https://doi.org/10.48670/moi-00052
# nc file downloaded from
# https://data.marine.copernicus.eu/product/MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012/services
# dataset-armor-3d-rep-monthly

aolinto

import copernicusmarine as cm

cm.subset(
  dataset_id="dataset-armor-3d-rep-monthly",  
  dataset_version="202012",
  variables=["mlotst","so","to"],
  minimum_longitude=-49.0,
  maximum_longitude=-38.5,
  minimum_latitude=-28.5,
  maximum_latitude=-17.5,

aolinto

# ====================================
# Polygons with colors and patterns
# Author: Antônio Olinto Ávila da Silva
# Created: 2021-11-21
# Last edition:
# ====================================

# in Linux to install the packages one may need
sudo apt install libmagick++-dev
sudo apt install libudunits2-dev

aolinto

# ====================================
# Population Dynamics Example
# Author: Antônio Olinto Ávila da Silva
# Created: 2021-09-13
# Last edition: 2021-10-15
# ====================================

# libraries
# =========
library(ggplot2)

aolinto

# =======================================================================================================================
# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# version 2021/04/19
# https://gist.github.com/aolinto/86d2091a5337c1bbcec888e37ca884b3
# script to process Multi Observation Global Ocean 3D Temperature Salinity
# product MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012
# nc file downloaded from
# https://resources.marine.copernicus.eu/?option=com_csw&view=details&product_id=MULTIOBS_GLO_PHY_TSUV_3D_MYNRT_015_012
# dataset-armor-3d-rep-monthly
# the script will transform nc file to brick raster, read temperature and salinity data

aolinto

# ==========================================================================================
# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# version 2021/04/19
# https://gist.github.com/aolinto/3a0872e0fb61b7ca3e69d35d286ae26c
# script to process Tropical Rainfall Measuring Mission (TRMM) data
# 3B43.7: Monthly 0.25 x 0.25 degree merged TRMM and other sources estimates 
# files downloaded from
# https://disc.gsfc.nasa.gov/
# select: TRMM_3b43_7 / Subset-Get data /
# Download: OPeNDAP / variables: precipitation / file format: netCDF

aolinto

# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# https://gist.github.com/aolinto/9d9514eb453109425f5b35c42fa0eb95
# script to process COPERNICUS Sea Surface Salinity
# product MULTIOBS_GLO_PHY_REP_015_002
# nc file downloaded from
# http://marine.copernicus.eu/services-portfolio/access-to-products/?option=com_csw&view=details&product_id=MULTIOBS_GLO_PHY_REP_015_002
# dataset-armor-3d-rep-monthly
# the script will transform nc file to brick raster, read temperature and salinity data
# for a given area and depth, compute its statistics and write them into
# a single csv file named COPERNICUS_to.csv or COPERNICUS_so.csv

aolinto

# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# https://gist.github.com/aolinto/2099bbf7af343e2b9f919f5317c508b9
# script to process Aqua MODIS Sea Surface Temperature
# files downloaded from https://oceancolor.gsfc.nasa.gov/cgi/l3
# Aqua MODIS Sea Surface temperature 11 µ daytime Monthly 4 km SMI images or
# Aqua MODIS Sea Surface temperature 11 µ nigthtime Monthly 4 km SMI images
# all .L3m_MO_SST_sst_4km.nc (daytime) or .L3m_MO_NST4_sst4_4km (nigthtime)
# files must be in the working directory
# the script will open each nc file to read date information
# the script will also transform nc file to raster, read sst data

aolinto

# Antonio Olinto Avila-da-Silva, Instituto de Pesca, Brasil
# https://gist.github.com/aolinto/59e43cdbac3ff3e0cd5eb2eab5efcbc4
# script to process COPERNICUS Sea Surface Salinity
# product MULTIOBS_GLO_PHY_REP_015_002
# nc file downloaded from
# http://marine.copernicus.eu/services-portfolio/access-to-products/?option=com_csw&view=details&product_id=MULTIOBS_GLO_PHY_REP_015_002
# dataset-sss-ssd-rep-monthly sos variable
# the script will transform nc file to stack raster, read sss data
# for a given area, compute its statistics and write them into
# a single csv file named COPERNICUS_sss.csv