Created
May 2, 2013 16:30
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Conflict in blast and proj installation
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[@ in ~] | |
$ brew update | |
Already up-to-date. | |
[@ in ~] | |
$ brew doctor | |
Your system is ready to brew. | |
[@ in ~] | |
[@ in ~] | |
$ brew --config | |
HOMEBREW_VERSION: 0.9.4 | |
ORIGIN: https://github.com/mxcl/homebrew.git | |
HEAD: 1ae4396d08b562abcde2fdddd3e6c261104a0733 | |
HOMEBREW_PREFIX: /usr/local | |
HOMEBREW_CELLAR: /usr/local/Cellar | |
CPU: quad-core 64-bit nehalem | |
OS X: 10.8.3-x86_64 | |
Xcode: 4.6.2 | |
CLT: 4.6.0.0.1.1365549073 | |
LLVM-GCC: build 2336 | |
Clang: 4.2 build 425 | |
X11: 2.7.4 => /opt/X11 | |
System Ruby: 1.8.7-358 | |
Perl: /usr/bin/perl | |
Python: /usr/local/bin/python => /usr/local/Cellar/python/2.7.4/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
Ruby: /usr/local/bin/ruby => /usr/local/Cellar/ruby/2.0.0-p0/bin/ruby | |
[@ in ~] | |
$ brew install proj | |
==> Downloading http://download.osgeo.org/proj/proj-4.8.0.tar.gz | |
######################################################################## 100.0% | |
==> Downloading http://download.osgeo.org/proj/proj-datumgrid-1.5.zip | |
######################################################################## 100.0% | |
==> ./configure --prefix=/usr/local/Cellar/proj/4.8.0 | |
==> make install | |
🍺 /usr/local/Cellar/proj/4.8.0: 47 files, 5.7M, built in 25 seconds | |
[@ in ~] | |
$ brew install blast | |
==> Downloading ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.28/ncbi-blast-2.2.28 | |
######################################################################## 100.0% | |
######################################################################## 100.0%==> ./configure --prefix=/usr/local/Cellar/blast/2.2.28 | |
==> make | |
==> make install | |
==> Caveats | |
Using the option '--with-dll' will create dynamic binaries instead of | |
static. The NCBI Blast static installation is approximately 7 times larger | |
than the dynamic. | |
Static binaries should be used for speed if the executable requires | |
fast startup time, such as if another program is frequently restarting | |
the blast executables. | |
Warning: Could not link blast. Unlinking... | |
Error: The `brew link` step did not complete successfully | |
The formula built, but is not symlinked into /usr/local | |
You can try again using `brew link blast' | |
==> Summary | |
🍺 /usr/local/Cellar/blast/2.2.28: 3503 files, 768M, built in 13.1 minutes | |
[@ in ~] | |
$ brew link blast | |
Linking /usr/local/Cellar/blast/2.2.28... Warning: Could not link blast. Unlinking... | |
Error: Could not symlink file: /usr/local/Cellar/blast/2.2.28/lib/libproj.a | |
Target /usr/local/lib/libproj.a already exists. You may need to delete it. | |
To force the link and delete this file, do: | |
brew link --overwrite formula_name | |
To list all files that would be deleted: | |
brew link --overwrite --dry-run formula_name | |
[✘ @ in ~] | |
$ ls -l /usr/local/lib/libproj.a | |
lrwxr-xr-x 1 janke admin 34 May 2 12:11 /usr/local/lib/libproj.a -> ../Cellar/proj/4.8.0/lib/libproj.a | |
[@ in ~] | |
$ |
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