Created
September 4, 2015 01:07
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Cheap pairwise correlation of two binary variables with confusion matrix
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# Requires Hirb and Ruby 2.0+. | |
# The format for data is [[ test_positive, condition_positive ]], where each entry is a data point. | |
def correlate(data, test_event: 'Test', condition_event: 'Truth') | |
counts = data.group_by(&:itself).map { |bucket, v| [ bucket, v.length ] }.to_h | |
table = [ | |
[ counts[[true, true]] || 0, counts[[true, false]] || 0 ], | |
[ counts[[false, true]] || 0, counts[[false, false]] || 0 ] | |
] | |
all_test_positive = table[0][0] + table[0][1] | |
all_test_negative = table[1][0] + table[1][1] | |
all_condition_positive = table[0][0] + table[1][0] | |
all_condition_negative = table[0][1] + table[1][1] | |
correlation = (table[0][0] * table[1][1] - table[1][0] * table[0][1]).to_f / Math.sqrt( | |
all_test_positive * all_test_negative * all_condition_positive * all_condition_negative) | |
ppv = table[0][0].to_f / all_test_positive | |
npv = table[1][1].to_f / all_test_negative | |
sensitivity = table[0][0].to_f / all_condition_positive | |
specificity = table[1][1].to_f / all_condition_negative | |
headers = [ "Corr: #{correlation.round(2)}", condition_event, "NOT #{condition_event}", '' ] | |
Hirb::Helpers::Table.render([ | |
[ test_event, table[0][0], table[0][1], "PPV: #{ppv.round(2)}" ], | |
[ "NOT #{test_event}", table[1][0], table[1][1], "NPV: #{npv.round(2)}" ], | |
[ '', "Sensitivity: #{sensitivity.round(2)}", "Specificity: #{specificity.round(2)}", '' ] | |
], headers: headers) | |
end |
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