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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #11228
Raw
easybuild_test_report_11228_easybuilders_preasybuild-easyconfigs_20202710-UTC-14-27-31.md

Test report for easybuilders/easybuild-easyconfigs#11228

Test result

Build succeeded for 2 out of 2 (2 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS JAGS-4.3.0-foss-2020a.eb
  • SUCCESS rjags-4-10-foss-2020a-R-4.0.0.eb

Time info

  • start: Thu, 10 Sep 2020 14:21:06 +0000 (UTC)
  • end: Thu, 10 Sep 2020 14:27:31 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.2.2
  • easybuild-easyblocks version: 4.2.2
  • command line:
eb --upload-test-report --from-pr 11228 --rebuild
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/scratch/brussel/101/vsc10149/eb_builds'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/brussel/101/vsc10149/.local/easybuild/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='11228'
--git-working-dirs-path='/user/brussel/101/vsc10149/local/src/easybuild-github-dir'
--github-user='arielzn'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/brussel/101/vsc10149/.local/easybuild'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/theia/scratch/brussel/101/vsc10149/custom_ebs/rjags'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/brussel/101/vsc10149/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--rebuild
--repository='FileRepository'
--repositorypath='/user/brussel/101/vsc10149/.local/easybuild/ebfiles_repo'
--robot-paths=''
--sourcepath='/user/brussel/101/vsc10149/.local/easybuild/sources:/apps/brussel/sources:/apps/gent/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 24
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: Intel(R) Xeon(R) Gold 6126 CPU @ 2.60GHz
  • cpu speed: 2600.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-39) (GCC) ;
  • glibc version: 2.17
  • hostname: login2.cerberus.os
  • os name: centos linux
  • os type: Linux
  • os version: 7.7.1908
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Aug 7 2019, 00:51:29) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-39)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 95135

List of loaded modules

  • EasyBuild/4.2.2

Environment

BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CMAKE_PREFIX_PATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2
DISPLAY = localhost:16.0
EASYBUILD_BUILDPATH = /scratch/brussel/101/vsc10149/eb_builds
EASYBUILD_GITHUB_USER = arielzn
EASYBUILD_GIT_WORKING_DIRS_PATH = /user/brussel/101/vsc10149/local/src/easybuild-github-dir
EASYBUILD_SOURCEPATH = /user/brussel/101/vsc10149/.local/easybuild/sources:/apps/brussel/sources:/apps/gent/sources
EBDEVELEASYBUILD = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/easybuild/EasyBuild-4.2.2-easybuild-devel
EBROOTEASYBUILD = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2
EBVERSIONEASYBUILD = 4.2.2
EB_PYTHON = /usr/bin/python
EB_SCRIPT_PATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/bin/eb
FANCYLOGGER_IGNORE_MPI4PY = 1
FORWARD_COMPAT_LD_LIBRARY_PATH = 1
FORWARD_COMPAT_LD_PRELOAD = 1
FPATH = /usr/share/lmod/lmod/init/ksh_funcs
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/brussel/101/vsc10149
HOSTNAME = login2.cerberus.os
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SYSTEM_NAME = hydra-skylake
LMOD_VERSION = 8.4.1
LOADEDMODULES = EasyBuild/4.2.2
LOGNAME = vsc10149
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.wim=01;31:*.swm=01;31:*.dwm=01;31:*.esd=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36:
MAIL = /var/spool/mail/vsc10149
MANPATH = :
MODULEPATH = /apps/brussel/CO7/skylake/modules/2020a/all:/apps/brussel/CO7/skylake/modules/2019b/all:/apps/brussel/CO7/skylake/modules/2019a/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/etc/modulefiles/vsc:/user/brussel/101/vsc10149/local/easybuild/modules/all:/user/brussel/101/vsc10149/.local/easybuild/modules/all
MODULESHOME = /usr/share/lmod/lmod
NUM_PROCS = 248
PATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/bin:/user/brussel/101/vsc10149/.local/bin:/usr/bin:/usr/sbin:/usr/local/bin:/usr/local/sbin:/opt/ibutils/bin
PWD = /scratch/brussel/101/vsc10149/custom_ebs/rjags
PYTHONOPTIMIZE = 1
PYTHONPATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/lib/python2.7/site-packages
SHELL = /bin/bash
SHLVL = 2
SINGULARITY_CACHEDIR = /scratch/brussel/101/vsc10149/.singularity
SSH_AUTH_SOCK = /tmp/ssh-b5lx4bAEY2/agent.222138
SSH_CLIENT = 164.15.250.221 40680 22
SSH_CONNECTION = 164.15.250.221 40680 134.184.143.130 22
SSH_TTY = /dev/pts/18
TERM = screen-256color
USER = vsc10149
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = skylake
VSC_ARCH_SUFFIX = 
VSC_DATA = /data/brussel/101/vsc10149
VSC_DATA_VO = /does/not/exist
VSC_DATA_VO_USER = /does/not/exist/vsc10149
VSC_DEFAULT_CLUSTER_MODULE = hydra
VSC_HOME = /user/brussel/101/vsc10149
VSC_INSTITUTE = brussel
VSC_INSTITUTE_CLUSTER = hydra
VSC_INSTITUTE_LOCAL = brussel
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/brussel/101/vsc10149
VSC_SCRATCH_CLUSTER = /scratch/brussel/101/vsc10149
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/brussel/101/vsc10149
WORKDIR = /scratch/brussel/101/vsc10149
XDG_RUNTIME_DIR = /run/user/2510149
XDG_SESSION_ID = 141885
_ = /usr/bin/python
_LMFILES_ = /user/brussel/101/vsc10149/.local/easybuild/modules/all/EasyBuild/4.2.2.lua
_ModuleTable001_ = 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
_ModuleTable002_ = 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
_ModuleTable003_ = 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
_ModuleTable004_ = L21vZHVsZXMvMjAxOGEvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE3Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTdhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNmIvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2YS9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTViL2FsbDo6L2V0Yy9tb2R1bGVmaWxlcy92c2M6L3VzZXIvYnJ1c3NlbC8xMDEvdnNjMTAxNDkvbG9jYWwvZWFzeWJ1aWxkL21vZHVsZXMvYWxsOi91c2VyL2JydXNzZWwvMTAxL3ZzYzEwMTQ5Ly5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLH0=
_ModuleTable_Sz_ = 4
__LMOD_REF_COUNT_CMAKE_PREFIX_PATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2:1
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild/4.2.2:1
__LMOD_REF_COUNT_MODULEPATH = /apps/brussel/CO7/skylake/modules/2020a/all:1;/apps/brussel/CO7/skylake/modules/2019b/all:1;/apps/brussel/CO7/skylake/modules/2019a/all:1;/apps/brussel/CO7/skylake/modules/2018b/all:1;/apps/brussel/CO7/skylake/modules/2018a/all:1;/apps/brussel/CO7/skylake/modules/2017b/all:1;/apps/brussel/CO7/skylake/modules/2017a/all:1;/apps/brussel/CO7/skylake/modules/2016b/all:1;/apps/brussel/CO7/skylake/modules/2016a/all:1;/apps/brussel/CO7/skylake/modules/2015b/all:1;/etc/modulefiles/vsc:1;/user/brussel/101/vsc10149/local/easybuild/modules/all:1;/user/brussel/101/vsc10149/.local/easybuild/modules/all:1
__LMOD_REF_COUNT_PATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/bin:1;/user/brussel/101/vsc10149/.local/bin:1;/usr/bin:2;/usr/sbin:2;/usr/local/bin:1;/usr/local/sbin:1;/opt/ibutils/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /user/brussel/101/vsc10149/.local/easybuild/software/EasyBuild/4.2.2/lib/python2.7/site-packages:1
__LMOD_REF_COUNT__LMFILES_ = /user/brussel/101/vsc10149/.local/easybuild/modules/all/EasyBuild/4.2.2.lua:1
__LMOD_SET_FPATH = 1
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