Created
March 14, 2012 10:57
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pop packaging
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import ez_setup | |
ez_setup.use_setuptools() | |
import glob | |
import os | |
import sys | |
from setuptools import setup | |
from distutils.extension import Extension | |
if 'setuptools.extension' in sys.modules: | |
m = sys.modules['setuptools.extension'] | |
m.Extension.__dict__ = m._Extension.__dict__ | |
version_py = os.path.join(os.path.dirname(__file__), 'pop', 'version.py') | |
version = open(version_py).read().strip().split('=')[-1].replace('"','') | |
long_description = """ | |
``pop`` is a database framework for exploring genetic variation' | |
""" | |
tests_require = ['nose>=0.11'] | |
setup( | |
name="pop", | |
version=version, | |
install_requires=['numpy>=1.6.0', 'pyparsing>=1.5.6', 'pysam>=0.6', 'pyvcf>=0.4.0'], | |
requires = ['python (>=2.5, <3.0)'], | |
tests_require=tests_require, | |
setup_requires=tests_require, | |
extras_require={'test': tests_require}, | |
packages=['pop', | |
'pop.test', | |
'pop.scripts', | |
'pop.test.data'], | |
author="Aaron Quinlan and Uma Paila", | |
description='A database framework for exploring genetic variation', | |
long_description=long_description, | |
url="none", | |
package_dir = {'pop': "pop"}, | |
package_data = {'pop': ['data/*']}, | |
scripts = ['pop/scripts/pop'], | |
author_email="arq5x@virginia.edu", | |
classifiers=[ | |
'Development Status :: 4 - Beta', | |
'Intended Audience :: Science/Research', | |
'License :: OSI Approved :: GNU General Public License (GPL)', | |
'Topic :: Scientific/Engineering :: Bio-Informatics'] | |
) |
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