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arq5x/example.sh

Created April 4, 2015 20:26
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minimum tiling path
Raw
example.sh
cat ivl.bed
chr1 10 30
cat data.bed
chr1 9 20 d1
chr1 12 18 d2
chr1 12 20 d3
chr1 15 16 d4
chr1 25 40 d5
chr1 26 30 d6
bedtools intersect -a ivl.bed -b data.bed -wo
chr1 10 30 chr1 9 20 10
chr1 10 30 chr1 12 18 6
chr1 10 30 chr1 12 20 8
chr1 10 30 chr1 15 16 1
chr1 10 30 chr1 25 40 5
chr1 10 30 chr1 26 30 4
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